Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017140

Physical Location & Seq

Genomic Coordinates Forward (+)

10698391 .. 10698840

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G180400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCAAGTTTCTTGAGCTTACCACCATTCTCTCCCTCATCATACCTTTGCTCATAACAATGCAGGTCCAAATGGCCTTCTCATCTGAGATCGAAGACGACGAAGAATACGTGCTCGACTCTCCATTGCTGAACTTCAGATCAAGAAGCAGATTCTTGGGCAGTGTAATCAAGCAAGGTGCTAAGTGCAATCCCATTAAGAAGAACATCTGTAATGGGATTTCGGCGAACAAAGGAACAAGCCTTTTGTTTTGCTGCAAGATAAAGTGTGTCAATGTTCTTGGAGATAGGAACCACTGTGGGCAATGTGGTCGTAAGTGCAAGCTTGGAGAGCTTTGCTGCCATGGAACTTGTACCAACATTTTAAACAATGTAAACAATTGTGGCAAGTGCGATAAGAAATGCTTGCATGGAGTTAAATGTCAGCATGCAACTTGTGGGTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0006950 GO:0006952 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009863 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010193 GO:0010337 GO:0010565 GO:0010817 GO:0010941 GO:0010942 GO:0014070 GO:0019216 GO:0019217 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0042221 GO:0042304 GO:0042493 GO:0042742 GO:0043207 GO:0044421 GO:0046677 GO:0046885 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080140 GO:0080141 GO:0080142 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stig1

Protein Analysis

150

Amino Acids

16.36

Weight (kDa)

8.79

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53130
fragaria_vesca	FvH4_3g19820
malus_domestica	MD03G1228400.v1.1
prunus_persica	Prupe.4G180300_v2.0.a1 Prupe.4G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033251
rosa_laevigata	RLG00000033460
rosa_multiflora	Rmu_ssc0000299.1_g000017
rosa_roxburghii	Rroxscaffold_1G00046740
rosa_rugosa	Rorug05G0138100
rosa_samantha	Rh5AG229900 Rh5CG258800
rosa_wichuraiana	Rw5G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	355
AluBI	AGCT	3 cut(s)	19, 325, 334
AluI	AGCT	3 cut(s)	19, 325, 334
Alw21I	GWGCWC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	3, 75
ApeKI	GCWGC	2 cut(s)	255, 339
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	242, 326
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	256, 340
BlsI	GCNGC	2 cut(s)	257, 341
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	343
Bse3DI	GCAATG	2 cut(s)	125, 311
BseDI	CCNNGG	1 cut(s)	343
BseMI	GCAATG	2 cut(s)	125, 311
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	242, 326
BshFI	GGCC	2 cut(s)	5, 77
BsiHKAI	GWGCWC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	5, 77
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	90, 140
Bsp19I	CCATGG	1 cut(s)	343
BspANI	GGCC	2 cut(s)	5, 77
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	125, 311
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	90, 140
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	323, 407, 429
BstDEI	CTNAG	2 cut(s)	87, 183
BstDSI	CCRYGG	1 cut(s)	343
BstKTI	GATC	2 cut(s)	93, 143
BstMBI	GATC	2 cut(s)	90, 140
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	242, 326
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	5, 77
BtgI	CCRYGG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	169, 295
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	323, 407, 429
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	3 cut(s)	344, 410, 428
CviJI	RGCY	6 cut(s)	5, 19, 77, 243, 325, 334
CviKI_1	RGCY	6 cut(s)	5, 19, 77, 243, 325, 334
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	2 cut(s)	87, 183
DpnI	GATC	2 cut(s)	92, 142
DpnII	GATC	2 cut(s)	90, 140
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	3 cut(s)	347, 413, 431
FaiI	YATR	6 cut(s)	44, 56, 345, 411, 429, 444
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	3 cut(s)	343, 409, 427
Fnu4HI	GCNGC	2 cut(s)	256, 340
Fsp4HI	GCNGC	2 cut(s)	256, 340
GluI	GCNGC	2 cut(s)	256, 340
HaeIII	GGCC	2 cut(s)	5, 77
Hin1II	CATG	3 cut(s)	347, 413, 431
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	119, 153
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	88, 140
Hpy188III	TCNNGA	2 cut(s)	14, 144
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	6 cut(s)	64, 189, 258, 321, 409, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	2 cut(s)	87, 183
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	347, 413, 431
Kzo9I	GATC	2 cut(s)	90, 140
LpnPI	CCDG	1 cut(s)	50
Lsp1109I	GCAGC	2 cut(s)	242, 326
MaeII	ACGT	1 cut(s)	111
MalI	GATC	2 cut(s)	92, 142
MboI	GATC	2 cut(s)	90, 140
MboII	GAAGA	3 cut(s)	107, 116, 214
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	379
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	198, 365, 417
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	2 cut(s)	90, 140
NlaIII	CATG	3 cut(s)	347, 413, 431
NlaIV	GGNNCC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 108
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	257, 341
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	198, 365, 417
SatI	GCNGC	2 cut(s)	256, 340
Sau3AI	GATC	2 cut(s)	90, 140
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	21, 49, 69, 114, 181, 327, 336
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	93, 117
TasI	AATT	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	3 cut(s)	198, 365, 417
Tru9I	TTAA	3 cut(s)	198, 365, 417
TscAI	CASTG	2 cut(s)	169, 302
TseI	GCWGC	2 cut(s)	255, 339
TspRI	CASTG	2 cut(s)	169, 302
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.