Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017140

Physical Location & Seq

Genomic Coordinates Forward (+)

10696081 .. 10696763

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCCAACTTCCTCAAGCTCACCACCATTCTCTCCCTCATGATACCTTCACTAGTCCTAGCTCTGCATTCTCAAATGGGCTTCTCATCATCCGAGCTCGAAGAGAAAGAAGAGTATGTGCTTGACTCTCCAAACCCTAGTTTCAAATCCAGAAGCAGGTTCTTGGCCAGCATCATAAAAAAAGGTGCACATTGTGATCCTATCAAGCACAACATTTGCAATGGGATTTCAGCAAACAAAGGCACCAGCATTCTCCATTGCTGCAAGACACATTGCAGAAATGTTCTTGGCGATAAGAATAATTGTGGGAAATGTGGGAACAAATGCAAGCTTGGCATGCATTGTTGCAATGGGACTTGCATCAATACTACTTTCAATGCCAACAATTGTGGCAAGTGTGGTAAAAAGTGCAAGTATGGTGTTAAATGCGAGTATGGATATTGTGGGTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0006950 GO:0006952 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009863 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010193 GO:0010337 GO:0010565 GO:0010817 GO:0010941 GO:0010942 GO:0014070 GO:0019216 GO:0019217 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0042221 GO:0042304 GO:0042493 GO:0042742 GO:0043207 GO:0044421 GO:0046677 GO:0046885 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080140 GO:0080141 GO:0080142 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stig1

Protein Analysis

152

Amino Acids

16.47

Weight (kDa)

9.0

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53130
fragaria_vesca	FvH4_3g19820
malus_domestica	MD03G1228400.v1.1
prunus_persica	Prupe.4G180300_v2.0.a1 Prupe.4G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033251
rosa_laevigata	RLG00000033460
rosa_multiflora	Rmu_ssc0000299.1_g000017
rosa_roxburghii	Rroxscaffold_1G00046740
rosa_rugosa	Rorug05G0138100
rosa_samantha	Rh5AG229900 Rh5CG258800
rosa_wichuraiana	Rw5G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	3, 165
AdeI	CACNNNGTG	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	145, 376
AhlI	ACTAGT	1 cut(s)	52
AluBI	AGCT	4 cut(s)	19, 62, 97, 331
AluI	AGCT	4 cut(s)	19, 62, 97, 331
Alw21I	GWGCWC	2 cut(s)	99, 190
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	2 cut(s)	3, 165
ApaLI	GTGCAC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	2 cut(s)	5, 167
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	99, 190
BbvI	GCAGC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 59, 138
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	2 cut(s)	180, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse3DI	GCAATG	4 cut(s)	226, 256, 271, 355
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	4 cut(s)	226, 256, 271, 355
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	2 cut(s)	5, 167
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	99, 190
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	2 cut(s)	67, 249
BsnI	GGCC	2 cut(s)	5, 167
Bsp1286I	GDGCHC	2 cut(s)	99, 190
Bsp143I	GATC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	5, 167
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	4 cut(s)	226, 256, 271, 355
BssMI	GATC	1 cut(s)	196
Bst6I	CTCTTC	2 cut(s)	96, 105
BstC8I	GCNNGC	3 cut(s)	169, 329, 338
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 337
BstNSI	RCATGY	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	5, 167
BtsCI	GGATG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	169, 329, 338
CciI	TCATGA	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	2 cut(s)	40, 337
CviJI	RGCY	7 cut(s)	5, 19, 62, 81, 97, 167, 331
CviKI_1	RGCY	7 cut(s)	5, 19, 62, 81, 97, 167, 331
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	194
EaeI	YGGCCR	2 cut(s)	3, 165
Eam1104I	CTCTTC	2 cut(s)	96, 105
EarI	CTCTTC	2 cut(s)	96, 105
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	2 cut(s)	43, 340
FaiI	YATR	7 cut(s)	41, 117, 176, 338, 417, 435, 450
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	39, 336
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	3 cut(s)	53, 59, 138
GluI	GCNGC	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	5, 167
Hin1II	CATG	2 cut(s)	43, 340
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	40, 150
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 337
HpyF3I	CTNAG	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	43, 340
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	142, 163, 181, 259
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	2 cut(s)	180, 369
MaeI	CTAG	3 cut(s)	53, 59, 138
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	113, 122
MfeI	CAATTG	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	99, 190
MlsI	TGGCCA	2 cut(s)	5, 167
MluCI	AATT	2 cut(s)	301, 385
MluNI	TGGCCA	2 cut(s)	5, 167
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	23, 47
Mox20I	TGGCCA	2 cut(s)	5, 167
Mph1103I	ATGCAT	1 cut(s)	342
MscI	TGGCCA	2 cut(s)	5, 167
MseI	TTAA	1 cut(s)	423
Msp20I	TGGCCA	2 cut(s)	5, 167
MunI	CAATTG	1 cut(s)	385
Mva1269I	GAATGC	2 cut(s)	67, 249
MwoI	GCNNNNNNNGC	2 cut(s)	333, 337
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	43, 340
NlaIV	GGNNCC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	1 cut(s)	340
PaeI	GCATGC	1 cut(s)	340
PagI	TCATGA	1 cut(s)	39
PctI	GAATGC	2 cut(s)	67, 249
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	99, 190
SetI	ASST	7 cut(s)	21, 49, 64, 99, 161, 187, 333
SfaNI	GCATC	2 cut(s)	180, 369
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	52
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	2 cut(s)	301, 385
SspMI	CTAG	3 cut(s)	53, 59, 138
SstI	GAGCTC	1 cut(s)	99
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	301, 385
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseI	GCWGC	1 cut(s)	261
VneI	GTGCAC	1 cut(s)	186
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	3 cut(s)	53, 59, 138
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.