Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014089

Physical Location & Seq

Genomic Coordinates Forward (+)

19895967 .. 19898360

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTCCGCCGTGAAATCTGTCTCTTCCTTCAGGCTCGCCTCTCTCCTCCGCCGTGAGAATGATCCTTCCGCCGCCATGAAGCTTTTCCGAAACCCTGATCCAGAATCAACGAACCCAAAAAGGCCCTTCAGATACTCGCTTCTTTGCTACGATATCATCATCACGAAACTTGGTGGCTCCAAGATGTTTGACGAGCTAGATCAGGTACTTCTCCACCTCAAGACCGATACTCGTATCGTTCCTACAGAGATTATATTTTGCAATGTGATCAATTTCTTTGGCCGTGGAAAATTACCCAGTCGTGCACTCCACATGTTCGACGAAATGCCTCAATACCGTTGCCAACGCACTGTGAAATCTTTGAACTCTCTGTTGAGTGCGCTTTTAAAGTGCGGTGAGTTGGAGAAAATGAAGGAACGTCTTTCGAGTATTGATGAGTTTGGTAAGCCTGACGCTTGTACTTACAATATACTGATCCATGGATGTTCTCAGAGCGGGTGTTTCGATGATGCCTTGAAGCTATTCGATGAAATGGTCAAGAAAAAAGTGAAGCCCACTGGTGTTACCTTTGGGACGTTGATTCACGGGTTGTGCAAGGATTCGAGGGTGAAGGAAGCACTGAAGATGAAGCACGATATGTTAAAAGTGTATGGAGTGCGTCCCACGGTACACATTTATGCGTCGTTGATTAAAGCGCTTTGTCAAATTGGTGAATTGAGTTTTGCGTTTAAGCTTAAGGATGAGGCGTACGAAGGAAAGATTAAAGTAGACGCAGCTATATACTCTACGTTGATTAGCTCACTTATAAAAGCTGGAAGGTCGAATGAGGTATCGATGATTTTGGAAGAAATGAGTGAAAAAGGATGCAAACCTGATACAGTGACTTACAATGTACTAATTAACGGGTTCTGTGTTGAGAATGATTCCGAATCAGCTAATCGAGTCTTGGATGAAATGGTTGAAAAGGGCTTGAAACCAGATGTTATAAGCTACAACATGATACTTGGTGTCTTTTTTAGAATCAAAAAATGGGAAGAAGCTACTTACTTGTTTGAAGATATGCCCAGAAGAGGTTGCAGCCCTGATACCTTATCGTATAGGATAGTTTTCGATGGGCTTTGCGAAGGTTTACAATTCGAAGAAGCTGCAGTTATCTTAGACGAAATGCTTTTCAAAGGTTATAAGCCTCGCAGGGATAGGCTAGAGGGATTTCTGCAAAAGCTATGTGAGAGTGGAAAGTTGGAGATTCTGAGTAAAGTTATTAGTAGCTTGCATAGAGGGATTGCTGGTGATGCAGATGTGTGGTCGGTTATGATACCTACAATGTGCAAAGAACCCGTGATATCGGATTCTATTGATTTGTTGTTGAACACAGTAAAGGAAGATGGTCCTTTATCAGCAATGCCACAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

471

Amino Acids

53.07

Weight (kDa)

7.43

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	45 - 75	9.9e-10	PPR repeat
PPR_3	PF13812	45 - 91	1.3e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	45 - 134	9.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	46 - 95	3.2e-18	PPR repeat family
PPR	PF01535	50 - 78	8.8e-10	PPR repeat
PPR_1	PF12854	78 - 109	2.6e-09	PPR repeat
PPR_2	PF13041	84 - 131	9.3e-10	PPR repeat family
PPR_long	PF17177	134 - 257	6.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	140 - 198	2.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	153 - 200	5.5e-15	PPR repeat family
PPR_1	PF12854	183 - 216	3.5e-12	PPR repeat
PPR_2	PF13041	187 - 234	1.6e-15	PPR repeat family
PPR	PF01535	190 - 220	1.4e-07	PPR repeat
PPR_3	PF13812	210 - 263	3.6e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	222 - 270	4.7e-16	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53330 AT1G53330
fragaria_vesca	FvH4_5g12530
malus_domestica	MD14G1223500.v1.1
prunus_persica	Prupe.5G218700_v2.0.a1
pyrus_communis	pycom06g18980 pycom14g18480
rosa_chinensis	RchiOBHm_Chr7g0184831
rosa_laevigata	RLG00000004951
rosa_multiflora	Rmu_ssc0000289.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269350
rosa_rugosa	Rorug06G0465200
rosa_samantha	Rh7AG077700 Rh7BG069600 Rh7CG070400 Rh7DG069800
rosa_wichuraiana	Rw7G005770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	806, 986, 1182
AccBSI	CCGCTC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	6 cut(s)	6, 49, 69, 72, 393, 495
AclWI	GGATC	3 cut(s)	56, 92, 469
AcoI	YGGCCR	1 cut(s)	280
AcuI	CTGAAG	3 cut(s)	13, 112, 641
AfaI	GTAC	5 cut(s)	207, 460, 669, 749, 894
AfeI	AGCGCT	1 cut(s)	696
AfiI	CCNNNNNNNGG	1 cut(s)	1070
AflII	CTTAAG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	7 cut(s)	364, 517, 962, 973, 1055, 1174, 1369
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	3 cut(s)	56, 92, 469
Aor51HI	AGCGCT	1 cut(s)	696
AoxI	GGCC	2 cut(s)	122, 280
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	773, 1077, 1145
Asp700I	GAANNNNTTC	2 cut(s)	83, 521
AspLEI	GCGC	2 cut(s)	382, 697
AspS9I	GGNCC	2 cut(s)	123, 1388
AsuHPI	GGTGA	4 cut(s)	407, 619, 722, 1301
AsuII	TTCGAA	1 cut(s)	1137
AvaII	GGWCC	1 cut(s)	1388
BaeGI	GKGCMC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	785, 1089, 1132
BccI	CCATC	2 cut(s)	1106, 1379
BceAI	ACGGC	2 cut(s)	36, 267
BcgI	CGANNNNNNTGC	2 cut(s)	1127, 1161
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	197, 1202, 1414
BfmI	CTRYAG	2 cut(s)	243, 1146
BfoI	RGCGCY	1 cut(s)	698
BfrI	CTTAAG	1 cut(s)	734
BisI	GCNGC	4 cut(s)	72, 774, 1078, 1146
BlsI	GCNGC	4 cut(s)	73, 775, 1079, 1147
Bme18I	GGWCC	1 cut(s)	1388
BmgT120I	GGNCC	2 cut(s)	123, 1388
BmiI	GGNNCC	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	499, 854, 1282
BmuI	ACTGGG	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	1137
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	283, 478, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	1070
Bse1I	ACTGG	2 cut(s)	297, 562
Bse3DI	GCAATG	2 cut(s)	268, 1407
BseCI	ATCGAT	1 cut(s)	833
BseDI	CCNNGG	3 cut(s)	283, 478, 663
BseGI	GGATG	4 cut(s)	488, 745, 869, 955
BseLI	CCNNNNNNNGG	1 cut(s)	1070
BseMI	GCAATG	2 cut(s)	268, 1407
BseMII	CTCAG	2 cut(s)	503, 1241
BseNI	ACTGG	2 cut(s)	297, 562
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	785, 1089, 1132
BshFI	GGCC	2 cut(s)	124, 282
BshVI	ATCGAT	1 cut(s)	833
BsiHKAI	GWGCWC	1 cut(s)	307
BsiWI	CGTACG	1 cut(s)	747
BslFI	GGGAC	2 cut(s)	586, 645
BslI	CCNNNNNNNGG	1 cut(s)	1070
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	2 cut(s)	586, 645
BsnI	GGCC	2 cut(s)	124, 282
Bsp119I	TTCGAA	1 cut(s)	1137
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	61, 97, 199, 267, 474
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	6 cut(s)	6, 49, 69, 72, 393, 495
BspANI	GGCC	2 cut(s)	124, 282
BspCNI	CTCAG	2 cut(s)	502, 1242
BspDI	ATCGAT	1 cut(s)	833
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	1150
BspPI	GGATC	3 cut(s)	56, 92, 469
BspT104I	TTCGAA	1 cut(s)	1137
BspTI	CTTAAG	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	268, 1407
BsrI	ACTGG	2 cut(s)	297, 562
BssECI	CCNNGG	3 cut(s)	283, 478, 663
BssMI	GATC	5 cut(s)	61, 97, 199, 267, 474
BssT1I	CCWWGG	1 cut(s)	478
Bst4CI	ACNGT	5 cut(s)	338, 352, 667, 880, 1375
Bst6I	CTCTTC	2 cut(s)	28, 1063
BstAFI	CTTAAG	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	1137
BstC8I	GCNNGC	2 cut(s)	36, 1271
BstDEI	CTNAG	3 cut(s)	489, 1156, 1250
BstDSI	CCRYGG	3 cut(s)	283, 478, 663
BstF5I	GGATG	4 cut(s)	488, 745, 869, 955
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	2 cut(s)	382, 697
BstKTI	GATC	5 cut(s)	64, 100, 202, 270, 477
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	5 cut(s)	61, 97, 199, 267, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	1292
BstNSI	RCATGY	1 cut(s)	316
BstSFI	CTRYAG	2 cut(s)	243, 1146
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	3 cut(s)	785, 1089, 1132
Bsu15I	ATCGAT	1 cut(s)	833
BsuRI	GGCC	2 cut(s)	124, 282
BsuTUI	ATCGAT	1 cut(s)	833
BtgI	CCRYGG	3 cut(s)	283, 478, 663
BtsCI	GGATG	4 cut(s)	488, 745, 869, 955
BtsIMutI	CAGTG	4 cut(s)	348, 555, 617, 885
Cac8I	GCNNGC	2 cut(s)	36, 1271
CfoI	GCGC	2 cut(s)	382, 697
Cfr13I	GGNCC	2 cut(s)	123, 1388
ClaI	ATCGAT	1 cut(s)	833
CseI	GACGC	4 cut(s)	461, 647, 669, 779
Csp6I	GTAC	5 cut(s)	206, 459, 668, 748, 893
CviAII	CATG	4 cut(s)	76, 313, 479, 997
CviQI	GTAC	5 cut(s)	206, 459, 668, 748, 893
DdeI	CTNAG	3 cut(s)	489, 1156, 1250
DpnI	GATC	5 cut(s)	63, 99, 201, 269, 476
DpnII	GATC	5 cut(s)	61, 97, 199, 267, 474
DraI	TTTAAA	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	28, 1063
EarI	CTCTTC	2 cut(s)	28, 1063
EciI	GGCGGA	2 cut(s)	38, 58
Eco130I	CCWWGG	1 cut(s)	478
Eco32I	GATATC	2 cut(s)	154, 1344
Eco47I	GGWCC	1 cut(s)	1388
Eco47III	AGCGCT	1 cut(s)	696
Eco57I	CTGAAG	3 cut(s)	13, 112, 641
EcoO109I	RGGNCCY	1 cut(s)	123
EcoRV	GATATC	2 cut(s)	154, 1344
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	4 cut(s)	79, 316, 482, 1000
FaqI	GGGAC	2 cut(s)	586, 645
FatI	CATG	4 cut(s)	75, 312, 478, 996
FauI	CCCGC	1 cut(s)	488
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	4 cut(s)	72, 774, 1078, 1146
FokI	GGATG	4 cut(s)	495, 752, 876, 962
Fsp4HI	GCNGC	4 cut(s)	72, 774, 1078, 1146
FspBI	CTAG	3 cut(s)	197, 1202, 1414
GlaI	GCGC	2 cut(s)	381, 696
GluI	GCNGC	4 cut(s)	72, 774, 1078, 1146
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	124, 282
HgaI	GACGC	4 cut(s)	461, 647, 669, 779
HhaI	GCGC	2 cut(s)	382, 697
Hin1II	CATG	4 cut(s)	79, 316, 482, 1000
Hin6I	GCGC	2 cut(s)	380, 695
HinP1I	GCGC	2 cut(s)	380, 695
HindIII	AAGCTT	2 cut(s)	80, 731
HinfI	GANTC	9 cut(s)	104, 580, 599, 923, 929, 942, 1020, 1246, 1349
HphI	GGTGA	4 cut(s)	407, 619, 722, 1301
Hpy166II	GTNNAC	4 cut(s)	305, 670, 769, 1130
Hpy188I	TCNGA	6 cut(s)	89, 131, 492, 928, 1251, 1348
Hpy188III	TCNNGA	4 cut(s)	101, 163, 220, 538
Hpy8I	GTNNAC	4 cut(s)	305, 670, 769, 1130
Hpy99I	CGWCG	2 cut(s)	323, 685
HpyAV	CCTTC	8 cut(s)	37, 75, 136, 406, 604, 746, 810, 1118
HpyCH4III	ACNGT	5 cut(s)	338, 352, 667, 880, 1375
HpyCH4IV	ACGT	3 cut(s)	418, 575, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1292
HpyF3I	CTNAG	3 cut(s)	489, 1156, 1250
HpySE526I	ACGT	3 cut(s)	418, 575, 788
Hsp92II	CATG	4 cut(s)	79, 316, 482, 1000
HspAI	GCGC	2 cut(s)	380, 695
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	61, 97, 199, 267, 474
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	3 cut(s)	785, 1089, 1132
LweI	GCATC	3 cut(s)	499, 854, 1282
MaeI	CTAG	3 cut(s)	197, 1202, 1414
MaeII	ACGT	3 cut(s)	418, 575, 788
MaeIII	GTNAC	2 cut(s)	562, 880
MalI	GATC	5 cut(s)	63, 99, 201, 269, 476
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	5 cut(s)	61, 97, 199, 267, 474
MboII	GAAGA	8 cut(s)	15, 634, 857, 1046, 1067, 1080, 1151, 1394
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	6 cut(s)	271, 290, 705, 713, 897, 1133
MlyI	GAGTC	1 cut(s)	951
MmeI	TCCRAC	2 cut(s)	381, 1221
MroXI	GAANNNNTTC	2 cut(s)	83, 521
MseI	TTAA	7 cut(s)	386, 641, 690, 729, 735, 762, 900
MslI	CAYNNNNRTG	1 cut(s)	675
MspCI	CTTAAG	1 cut(s)	734
MwoI	GCNNNNNNNGC	1 cut(s)	1292
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	5 cut(s)	61, 97, 199, 267, 474
NlaIII	CATG	4 cut(s)	79, 316, 482, 1000
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	1137
PciI	ACATGT	1 cut(s)	312
PdmI	GAANNNNTTC	2 cut(s)	83, 521
PfeI	GAWTC	8 cut(s)	104, 580, 599, 923, 929, 1020, 1246, 1349
Pfl23II	CGTACG	1 cut(s)	747
PkrI	GCNGC	4 cut(s)	73, 775, 1079, 1147
PleI	GAGTC	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	950
PscI	ACATGT	1 cut(s)	312
PsiI	TTATAA	3 cut(s)	806, 986, 1182
PspLI	CGTACG	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	123, 1388
PstI	CTGCAG	1 cut(s)	1150
RsaI	GTAC	5 cut(s)	207, 460, 669, 749, 894
RsaNI	GTAC	5 cut(s)	206, 459, 668, 748, 893
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	7 cut(s)	386, 641, 690, 729, 735, 762, 900
SatI	GCNGC	4 cut(s)	72, 774, 1078, 1146
Sau3AI	GATC	5 cut(s)	61, 97, 199, 267, 474
Sau96I	GGNCC	2 cut(s)	123, 1388
SchI	GAGTC	1 cut(s)	951
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	3 cut(s)	499, 854, 1282
SfcI	CTRYAG	2 cut(s)	243, 1146
SfuI	TTCGAA	1 cut(s)	1137
SinI	GGWCC	1 cut(s)	1388
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	2 cut(s)	218, 734
SmoI	CTYRAG	2 cut(s)	218, 734
Sse9I	AATT	6 cut(s)	271, 290, 705, 713, 897, 1133
SsiI	CCGC	6 cut(s)	6, 49, 69, 72, 393, 495
SspMI	CTAG	3 cut(s)	197, 1202, 1414
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	5 cut(s)	338, 352, 667, 880, 1375
TaiI	ACGT	3 cut(s)	421, 578, 791
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	6 cut(s)	271, 290, 705, 713, 897, 1133
TatI	WGTACW	2 cut(s)	458, 892
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	8 cut(s)	104, 580, 599, 923, 929, 1020, 1246, 1349
Tru1I	TTAA	7 cut(s)	386, 641, 690, 729, 735, 762, 900
Tru9I	TTAA	7 cut(s)	386, 641, 690, 729, 735, 762, 900
TscAI	CASTG	4 cut(s)	355, 562, 624, 885
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	3 cut(s)	773, 1077, 1145
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	5 cut(s)	92, 425, 543, 641, 966
TspRI	CASTG	4 cut(s)	355, 562, 624, 885
Vha464I	CTTAAG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	1388
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	768
XmnI	GAANNNNTTC	2 cut(s)	83, 521
XspI	CTAG	3 cut(s)	197, 1202, 1414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.