Rorug06G0465200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014089
Physical Location & Seq
Forward (+)
58990630 .. 58991431
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0465200.1

Sequence Viewer

Length: 369 bp
ATGTCTAGGCCATATGCTGAGCAACCTCCACCACCACCACCACCACCACCACAAGCCTTTGTGCTACAGGGCAGCGACGCCAGCACTTACTCCCCCCACGGCTCGATTGGTGCAGTGGTTGGTGTGCTTGTAATGGTCGTAATCCTCGCCGTAGTTGCTGTCGTAATCGGACGGCTCTGCTCCGGCAAGACTATCATGGGCTACGGCCATTTCGATATGGAGAGCTGGGCCGAGACCAAATGCTCATCTTGCATTGATGGAAGGATCAGTGTTTCACTTCCCAGGCCCAATGTGTCAACAGCAACATCACCAGCCCAACAATCTGAGCAATATGATGCTCAAACATCAGCACCTACTGCAAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

122

Amino Acids

12.73

Weight (kDa)

5.14

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CR_prot_dom_plant PF22812 9 - 61 2e-07 Plant cysteine-rich protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53330 AT1G53330
fragaria_vesca FvH4_5g12530
malus_domestica MD14G1223500.v1.1
prunus_persica Prupe.5G218700_v2.0.a1
pyrus_communis pycom06g18980 pycom14g18480
rosa_chinensis RchiOBHm_Chr7g0184831
rosa_laevigata RLG00000004951
rosa_multiflora Rmu_ssc0000289.1_g000014
rosa_roxburghii Rroxscaffold_3G00269350
rosa_rugosa Rorug06G0465200
rosa_samantha Rh7AG077700 Rh7BG069600 Rh7CG070400 Rh7DG069800
rosa_wichuraiana Rw7G005770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 78
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 272
AoxI GGCC 4 cut(s) 8, 205, 228, 284
ApeKI GCWGC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 228, 285
AsuHPI GGTGA 1 cut(s) 300
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 251
BceAI ACGGC 4 cut(s) 115, 134, 188, 220
BciT130I CCWGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 73
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 228, 285
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 325
Bpu1102I GCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 97, 281
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 97, 281
BseMII CTCAG 2 cut(s) 9, 315
BseXI GCAGC 1 cut(s) 84
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 4 cut(s) 10, 207, 230, 286
BsiSI CCGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 4 cut(s) 10, 207, 230, 286
Bso31I GGTCTC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 264
Bsp1720I GCTNAGC 1 cut(s) 18
BspANI GGCC 4 cut(s) 10, 207, 230, 286
BspCNI CTCAG 2 cut(s) 10, 316
BspPI GGATC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 97, 281
BssMI GATC 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 18, 324
BstDSI CCRYGG 1 cut(s) 97
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 4 cut(s) 81, 155, 249, 356
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 84
BsuRI GGCC 4 cut(s) 10, 207, 230, 286
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 274
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 228, 285
CseI GACGC 1 cut(s) 86
CviAII CATG 1 cut(s) 196
DdeI CTNAG 2 cut(s) 18, 324
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 281
FaeI CATG 1 cut(s) 199
FaiI YATR 5 cut(s) 13, 15, 197, 218, 333
FatI CATG 1 cut(s) 195
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 73
GsaI CCCAGC 1 cut(s) 229
HaeIII GGCC 4 cut(s) 10, 207, 230, 286
HapII CCGG 1 cut(s) 183
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 170, 325
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 113, 252, 359
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 155, 249, 356
HpyF3I CTNAG 2 cut(s) 18, 324
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 7 cut(s) 53, 94, 196, 211, 268, 295, 324
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MnlI CCTC 2 cut(s) 36, 155
MseI TTAA 1 cut(s) 367
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 4 cut(s) 81, 155, 249, 356
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PkrI GCNGC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 281
PspPI GGNCC 2 cut(s) 228, 285
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 2 cut(s) 228, 285
ScrFI CCNGG 1 cut(s) 283
SetI ASST 3 cut(s) 28, 227, 355
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 65
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 281
TaqI TCGA 2 cut(s) 104, 213
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 2 cut(s) 120, 274
TseI GCWGC 1 cut(s) 72
TspRI CASTG 2 cut(s) 120, 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.