FvH4_5g12530

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014089
Physical Location & Seq
Forward (+)
7075300 .. 7077064
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12530.t1

Sequence Viewer

Length: 1386 bp
ATGATGAAAGCTTCAAAATCCATCTCTCCCTTCAGGCTTTCCTCTCTTCTACGCAACCAAAAGGACCCAGCTCTCGCCCTCCAGCTCTTCCAAAACCCCAACCCTGATTCAAACCCCCAACCCCAAAAGCCCTTTCGCTACTCTCTCATTTCTTACGACATCATCATCTCCAAGCTCGGCCGCGCCAAAATGTTCGACCAAATGGAGCAAATTCTCGGGCAAATGAAGCAACAGACCCATTTGTCTCCGCCCGAAATCATCTTCTGCAATGTCATGTCCTACTACGGCAGGGCTCGTCTCCCTGATCGTGCACTCCACCTGTTTGATGAAATGCCTTCTTTCGGTTGCCAGCGGACTATCAAATCATTCAATTCCTTGCTGGATGCGCTTTTCAAATGTGGGAAAATTGAGAAGATGAGGGAGGTTTTGGAGGGGATTGAGGATTATGGGACCCCGGATGCGTGCACTTACAATATACTGATCAAGGCTTGTGAGGGTGAGGAATTGGATGATGCACGGAATGTGTTTGATGAAATGCGCAGCAAGGGTGTTGAACCGACTGATGTGACATTGGTGACTTTGATTTACAAGCTTTGCTCGGTTGATAGGGTGAAAGAAGCTTTGGAATTGAAAGAGGAATGTGAGCGCGTTCATGGGGTTATGGCTAATGCATTCGTGTATGCCTCTTTGATGAAAGGACTTTGTGGAATTGGTGAAATGACATTGGCTTTTGAGCTGAAGGATGAGATGGTGAGGAAGAACATTCGGTTCGATGCAGCGGTTTATTCTACATTGATCAGTGTGCTATTCAAGGCCGGTAGGAGAGGAGAGGTTTCGGGGCTATTGAAGGAAATGAGTGAGTATGGGTGCAAGCCAAACACTGTGACTTACAATGCAATGATTCATGGGTATTGTAAGGAGAAGGATTTTGAAGCAGCATATGGAGTTTTGGATGAGATGGTGAAGGAAGGGTGTAGGCCAAATGCTATTACCTACAATGTGATTATTGTTGCATTGTGCAAAGAAGGGAAATGGAGTGAAGCGAATCTGTTCTTTCAAGATTTACCAAGGCGCGGGTGCCATCCGGATATGCTCTCATATAGAATGCTATTTAGTGGACTTTGTGATTGTGGACAGTTTAAGGAAGCAGCATTTATCCTGGATGAGATGATTTATAAGGCTTACGCGCCCCATTATGCACGAACGCATAAACTTGTTGAGGGTTTGTGTGAGGAAGGTAATATGGAGTTGTTAGGGATAGTTTTGAGTAGCCTGGAAAAGGCAAATGTTCTTGATGAAGATACCTGGAGGGTGATCATTTCTACGCTACGTAAGGAGAAGCCGTCAGATGTCTTTGAGCTCATTGATACTTTGACTATTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

462

Amino Acids

52.37

Weight (kDa)

5.62

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 88 - 130 8.8e-06 PPR repeat family
PPR_3 PF13812 107 - 165 2.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 120 - 164 1.2e-07 PPR repeat family
PPR_1 PF12854 151 - 180 1e-05 PPR repeat
PPR_2 PF13041 165 - 199 3.3e-06 PPR repeat family
PPR_long PF17177 167 - 278 5.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 223 - 271 9.2e-09 PPR repeat family
PPR_long PF17177 240 - 349 7.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 246 - 304 4.4e-13 Pentatricopeptide repeat domain
PPR_2 PF13041 258 - 298 6.4e-08 PPR repeat family
PPR_1 PF12854 289 - 321 8e-13 PPR repeat
PPR_2 PF13041 292 - 341 6.2e-21 PPR repeat family
PPR PF01535 295 - 325 3.2e-10 PPR repeat
PPR_3 PF13812 295 - 339 4.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 324 - 352 1.8e-07 PPR repeat
PPR_2 PF13041 327 - 376 1.2e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53330 AT1G53330
fragaria_vesca FvH4_5g12530
malus_domestica MD14G1223500.v1.1
prunus_persica Prupe.5G218700_v2.0.a1
pyrus_communis pycom06g18980 pycom14g18480
rosa_chinensis RchiOBHm_Chr7g0184831
rosa_laevigata RLG00000004951
rosa_multiflora Rmu_ssc0000289.1_g000014
rosa_roxburghii Rroxscaffold_3G00269350
rosa_rugosa Rorug06G0465200
rosa_samantha Rh7AG077700 Rh7BG069600 Rh7CG070400 Rh7DG069800
rosa_wichuraiana Rw7G005770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
AasI GACNNNNNNGTC 1 cut(s) 241
Acc16I TGCGCA 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 1077
AccII CGCG 4 cut(s) 183, 648, 1074, 1187
AccIII TCCGGA 1 cut(s) 1084
AciI CCGC 5 cut(s) 181, 248, 352, 779, 1074
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 2 cut(s) 16, 758
AfiI CCNNNNNNNGG 3 cut(s) 341, 1073, 1279
AjnI CCWGG 3 cut(s) 1158, 1272, 1304
AjuI GAANNNNNNNTTGG 4 cut(s) 117, 149, 605, 637
AluBI AGCT 8 cut(s) 11, 71, 85, 175, 592, 620, 736, 1360
AluI AGCT 8 cut(s) 11, 71, 85, 175, 592, 620, 736, 1360
Alw21I GWGCWC 3 cut(s) 313, 467, 1362
Alw26I GTCTC 2 cut(s) 249, 302
Alw44I GTGCAC 2 cut(s) 309, 463
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 1084
AoxI GGCC 3 cut(s) 178, 813, 977
ApaLI GTGCAC 2 cut(s) 309, 463
ApeKI GCWGC 4 cut(s) 540, 776, 935, 1148
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 1049
AspLEI GCGC 6 cut(s) 185, 388, 540, 648, 1074, 1189
AspS9I GGNCC 2 cut(s) 64, 450
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 7 cut(s) 509, 586, 622, 725, 763, 973, 1324
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 2 cut(s) 64, 450
BaeGI GKGCMC 2 cut(s) 313, 467
BanI GGYRCC 1 cut(s) 1077
BanII GRGCYC 2 cut(s) 295, 1362
Bbv12I GWGCWC 3 cut(s) 313, 467, 1362
BbvI GCAGC 4 cut(s) 552, 788, 947, 1160
BccI CCATC 4 cut(s) 29, 742, 952, 1089
BceAI ACGGC 2 cut(s) 301, 1327
BciT130I CCWGG 3 cut(s) 1160, 1274, 1306
BclI TGATCA 3 cut(s) 480, 795, 1314
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 249, 302
BisI GCNGC 5 cut(s) 181, 541, 777, 936, 1149
BlsI GCNGC 5 cut(s) 182, 542, 778, 937, 1150
Bme1390I CCNGG 4 cut(s) 455, 1160, 1274, 1306
Bme18I GGWCC 2 cut(s) 64, 450
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 64, 450
BmiI GGNNCC 4 cut(s) 66, 451, 452, 1079
BmrFI CCNGG 4 cut(s) 455, 1160, 1274, 1306
BmsI GCATC 4 cut(s) 373, 448, 502, 763
BpmI CTGGAG 2 cut(s) 65, 1327
BpuMI CCSGG 1 cut(s) 455
BsaAI YACGTR 1 cut(s) 1331
BsaJI CCNNGG 2 cut(s) 453, 1067
BsaWI WCCGGW 1 cut(s) 1084
BsaXI ACNNNNNCTCC 2 cut(s) 1328, 1358
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 1073, 1279
Bse118I RCCGGY 1 cut(s) 815
Bse3DI GCAATG 2 cut(s) 274, 903
BseAI TCCGGA 1 cut(s) 1084
BseBI CCWGG 3 cut(s) 1160, 1274, 1306
BseDI CCNNGG 2 cut(s) 453, 1067
BseGI GGATG 7 cut(s) 388, 463, 514, 748, 958, 1081, 1168
BseLI CCNNNNNNNGG 3 cut(s) 341, 1073, 1279
BseMI GCAATG 2 cut(s) 274, 903
BseRI GAGGAG 1 cut(s) 840
BseSI GKGCMC 2 cut(s) 313, 467
BseX3I CGGCCG 1 cut(s) 178
BseXI GCAGC 4 cut(s) 552, 788, 947, 1160
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 4 cut(s) 183, 648, 1074, 1187
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 3 cut(s) 180, 815, 979
BshNI GGYRCC 1 cut(s) 1077
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 3 cut(s) 313, 467, 1362
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 455, 816, 1085
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 3 cut(s) 341, 1073, 1279
BsmAI GTCTC 2 cut(s) 249, 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 2 cut(s) 671, 1110
BsnI GGCC 3 cut(s) 180, 815, 979
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 4 cut(s) 295, 313, 467, 1362
Bsp13I TCCGGA 1 cut(s) 1084
Bsp143I GATC 4 cut(s) 304, 480, 795, 1314
BspACI CCGC 5 cut(s) 181, 248, 352, 779, 1074
BspANI GGCC 3 cut(s) 180, 815, 979
BspEI TCCGGA 1 cut(s) 1084
BspFNI CGCG 4 cut(s) 183, 648, 1074, 1187
BspLI GGNNCC 4 cut(s) 66, 451, 452, 1079
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 1077
BsrDI GCAATG 2 cut(s) 274, 903
BsrFI RCCGGY 1 cut(s) 815
BssAI RCCGGY 1 cut(s) 815
BssECI CCNNGG 2 cut(s) 453, 1067
BssMI GATC 4 cut(s) 304, 480, 795, 1314
BssT1I CCWWGG 1 cut(s) 1067
Bst2UI CCWGG 3 cut(s) 1160, 1274, 1306
Bst4CI ACNGT 2 cut(s) 883, 1137
Bst6I CTCTTC 2 cut(s) 51, 92
BstBAI YACGTR 1 cut(s) 1331
BstC8I GCNNGC 3 cut(s) 350, 463, 872
BstENI CCTNNNNNAGG 1 cut(s) 1277
BstF5I GGATG 7 cut(s) 388, 463, 514, 748, 958, 1081, 1168
BstFNI CGCG 4 cut(s) 183, 648, 1074, 1187
BstHHI GCGC 6 cut(s) 185, 388, 540, 648, 1074, 1189
BstKTI GATC 4 cut(s) 307, 483, 798, 1317
BstMAI GTCTC 2 cut(s) 249, 302
BstMBI GATC 4 cut(s) 304, 480, 795, 1314
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 226, 385
BstNI CCWGG 3 cut(s) 1160, 1274, 1306
BstSCI CCNGG 4 cut(s) 453, 1158, 1272, 1304
BstSLI GKGCMC 2 cut(s) 313, 467
BstSNI TACGTA 1 cut(s) 1331
BstUI CGCG 4 cut(s) 183, 648, 1074, 1187
BstV1I GCAGC 4 cut(s) 552, 788, 947, 1160
BstZI CGGCCG 1 cut(s) 178
BsuRI GGCC 3 cut(s) 180, 815, 979
BtsCI GGATG 7 cut(s) 388, 463, 514, 748, 958, 1081, 1168
BtsIMutI CAGTG 2 cut(s) 805, 879
Cac8I GCNNGC 3 cut(s) 350, 463, 872
CfoI GCGC 6 cut(s) 185, 388, 540, 648, 1074, 1189
Cfr10I RCCGGY 1 cut(s) 815
Cfr13I GGNCC 2 cut(s) 64, 450
CviAII CATG 3 cut(s) 274, 653, 905
DpnI GATC 4 cut(s) 306, 482, 797, 1316
DpnII GATC 4 cut(s) 304, 480, 795, 1314
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 178
EagI CGGCCG 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 51, 92
EarI CTCTTC 2 cut(s) 51, 92
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 1360
EclXI CGGCCG 1 cut(s) 178
Eco105I TACGTA 1 cut(s) 1331
Eco130I CCWWGG 1 cut(s) 1067
Eco24I GRGCYC 2 cut(s) 295, 1362
Eco47I GGWCC 2 cut(s) 64, 450
Eco52I CGGCCG 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 1360
Eco57I CTGAAG 2 cut(s) 16, 758
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 1360
EcoNI CCTNNNNNAGG 1 cut(s) 1277
EcoO109I RGGNCCY 2 cut(s) 64, 450
EcoRII CCWGG 3 cut(s) 1158, 1272, 1304
EcoT14I CCWWGG 1 cut(s) 1067
EcoT22I ATGCAT 1 cut(s) 673
EcoT38I GRGCYC 2 cut(s) 295, 1362
ErhI CCWWGG 1 cut(s) 1067
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 3 cut(s) 277, 656, 908
FaqI GGGAC 1 cut(s) 463
FatI CATG 3 cut(s) 273, 652, 904
FauI CCCGC 1 cut(s) 1067
FauNDI CATATG 1 cut(s) 940
FbaI TGATCA 3 cut(s) 480, 795, 1314
Fnu4HI GCNGC 5 cut(s) 181, 541, 777, 936, 1149
FokI GGATG 7 cut(s) 395, 470, 521, 755, 965, 1068, 1175
FriOI GRGCYC 2 cut(s) 295, 1362
Fsp4HI GCNGC 5 cut(s) 181, 541, 777, 936, 1149
FspI TGCGCA 1 cut(s) 539
GlaI GCGC 6 cut(s) 184, 387, 539, 647, 1073, 1188
GluI GCNGC 5 cut(s) 181, 541, 777, 936, 1149
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 2 cut(s) 65, 1327
HaeIII GGCC 3 cut(s) 180, 815, 979
HapII CCGG 3 cut(s) 455, 816, 1085
HhaI GCGC 6 cut(s) 185, 388, 540, 648, 1074, 1189
Hin1II CATG 3 cut(s) 277, 656, 908
Hin6I GCGC 6 cut(s) 183, 386, 538, 646, 1072, 1187
HinP1I GCGC 6 cut(s) 183, 386, 538, 646, 1072, 1187
HindIII AAGCTT 3 cut(s) 9, 590, 618
HinfI GANTC 3 cut(s) 107, 901, 1045
HpaII CCGG 3 cut(s) 455, 816, 1085
HphI GGTGA 7 cut(s) 509, 586, 622, 725, 763, 973, 1324
Hpy166II GTNNAC 4 cut(s) 311, 465, 1118, 1133
Hpy188I TCNGA 1 cut(s) 1348
Hpy188III TCNNGA 3 cut(s) 1058, 1085, 1292
Hpy8I GTNNAC 4 cut(s) 311, 465, 1118, 1133
HpyAV CCTTC 9 cut(s) 40, 345, 733, 841, 916, 958, 962, 1019, 1229
HpyCH4III ACNGT 2 cut(s) 883, 1137
HpyCH4IV ACGT 1 cut(s) 1330
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 385
HpySE526I ACGT 1 cut(s) 1330
Hsp92II CATG 3 cut(s) 277, 656, 908
HspAI GCGC 6 cut(s) 183, 386, 538, 646, 1072, 1187
KflI GGGWCCC 1 cut(s) 450
Kpn2I TCCGGA 1 cut(s) 1084
Ksp22I TGATCA 3 cut(s) 480, 795, 1314
Kzo9I GATC 4 cut(s) 304, 480, 795, 1314
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 4 cut(s) 552, 788, 947, 1160
LweI GCATC 4 cut(s) 373, 448, 502, 763
MaeII ACGT 1 cut(s) 1330
MaeIII GTNAC 3 cut(s) 565, 574, 883
MalI GATC 4 cut(s) 306, 482, 797, 1316
MboI GATC 4 cut(s) 304, 480, 795, 1314
MboII GAAGA 6 cut(s) 38, 79, 253, 424, 769, 1310
MhlI GDGCHC 4 cut(s) 295, 313, 467, 1362
MluCI AATT 6 cut(s) 210, 370, 405, 503, 626, 708
Mph1103I ATGCAT 1 cut(s) 673
MroI TCCGGA 1 cut(s) 1084
MroXI GAANNNNTTC 1 cut(s) 1049
MseI TTAA 1 cut(s) 1140
MspA1I CMGCKG 2 cut(s) 352, 779
MspI CCGG 3 cut(s) 455, 816, 1085
MspR9I CCNGG 4 cut(s) 455, 1160, 1274, 1306
Mva1269I GAATGC 2 cut(s) 671, 1110
MvaI CCWGG 3 cut(s) 1160, 1274, 1306
MvnI CGCG 4 cut(s) 183, 648, 1074, 1187
MwoI GCNNNNNNNGC 2 cut(s) 226, 385
NciI CCSGG 1 cut(s) 455
NdeI CATATG 1 cut(s) 940
NdeII GATC 4 cut(s) 304, 480, 795, 1314
NlaIII CATG 3 cut(s) 277, 656, 908
NlaIV GGNNCC 4 cut(s) 66, 451, 452, 1079
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 3 cut(s) 565, 574, 883
NsbI TGCGCA 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 92
PctI GAATGC 2 cut(s) 671, 1110
PdmI GAANNNNTTC 1 cut(s) 1049
PfeI GAWTC 3 cut(s) 107, 901, 1045
PfoI TCCNGGA 1 cut(s) 1158
PkrI GCNGC 5 cut(s) 182, 542, 778, 937, 1150
Ppu21I YACGTR 1 cut(s) 1331
PpuMI RGGWCCY 2 cut(s) 64, 450
PsiI TTATAA 1 cut(s) 1176
Psp124BI GAGCTC 1 cut(s) 1362
Psp5II RGGWCCY 2 cut(s) 64, 450
Psp6I CCWGG 3 cut(s) 1158, 1272, 1304
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 3 cut(s) 1158, 1272, 1304
PspN4I GGNNCC 4 cut(s) 66, 451, 452, 1079
PspPI GGNCC 2 cut(s) 64, 450
PspPPI RGGWCCY 2 cut(s) 64, 450
SacI GAGCTC 1 cut(s) 1362
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 1140
SatI GCNGC 5 cut(s) 181, 541, 777, 936, 1149
Sau3AI GATC 4 cut(s) 304, 480, 795, 1314
Sau96I GGNCC 2 cut(s) 64, 450
ScrFI CCNGG 4 cut(s) 455, 1160, 1274, 1306
SduI GDGCHC 4 cut(s) 295, 313, 467, 1362
SfaNI GCATC 4 cut(s) 373, 448, 502, 763
SinI GGWCC 2 cut(s) 64, 450
SnaBI TACGTA 1 cut(s) 1331
Sse9I AATT 6 cut(s) 210, 370, 405, 503, 626, 708
SsiI CCGC 5 cut(s) 181, 248, 352, 779, 1074
SstI GAGCTC 1 cut(s) 1362
StyD4I CCNGG 4 cut(s) 453, 1158, 1272, 1304
StyI CCWWGG 1 cut(s) 1067
TaaI ACNGT 2 cut(s) 883, 1137
TaiI ACGT 1 cut(s) 1333
TaqI TCGA 2 cut(s) 195, 771
TasI AATT 6 cut(s) 210, 370, 405, 503, 626, 708
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 107, 901, 1045
Tru1I TTAA 1 cut(s) 1140
Tru9I TTAA 1 cut(s) 1140
TscAI CASTG 2 cut(s) 805, 886
TseFI GTSAC 3 cut(s) 565, 574, 883
TseI GCWGC 4 cut(s) 540, 776, 935, 1148
Tsp45I GTSAC 3 cut(s) 565, 574, 883
TspDTI ATGAA 8 cut(s) 20, 239, 342, 546, 641, 707, 893, 1311
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 2 cut(s) 805, 886
VneI GTGCAC 2 cut(s) 309, 463
VpaK11BI GGWCC 2 cut(s) 64, 450
XagI CCTNNNNNAGG 1 cut(s) 1277
XapI RAATTY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 1049
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.