Prupe.5G218700_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014089
Physical Location & Seq
Reverse (-)
17097834 .. 17099600
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G218700.1

Sequence Viewer

Length: 1389 bp
ATGAATGCTTCAAAATCTATCTCTCCCTTCAGGCTTTCCTCTCTCCTACGTCGCCAGAAGGACCCAATTCTCGCTCTCCAACTCTTCCAAAACCCCAACTCTGATTCAACTCCTCAACTCAAAAGGCCTTTCCGCTACTCTCTCCTTTCCTACGACCTCATCATCACCAAGCTCGGCCGCGCCAAAATGTTCCACCAAATGGACCAAATCCTTCACCAATTGAAGCAAGATACCCGCTTTGCTCCCCCCGAAATCATCTTTTGCAATGTCATTTCGTTCTACGGTCGCGCTCATCTCCCCGACCGTGCACTCCAAATGTTCGATGAAATTCCCACATTTCGTTGCCACCGGACCGTGAAATCATTGAATTCATTGTTGAATGCGCTTCTCAAGTGTGGCGAGTTTGAGAAAATGTGGAAATTCTTTGTGGGTATTGACAAATACGCGACCCCGGATGCATGTACTTATAATATACTGATGAAAGCTTGTTGTTCGAATGAGTACTTGGATGATGCGTGGAAGGTGCTCGATGAAATGTCTAGAAAGGGTATTCCCCCGAATTCGGTGACAATGGCGAGTTTGATTTATTGCCTTTGTTCGAATTTGAAGTTGAAAGAAGCTTTCACGTTGAAAGAGGATATGGCTAGGGTATATGGGGTGCCGCCTACTATATTCGTGTATACCTCCTTGATGAAAGGGCTTTGCAAGATTGGTGAAATGAGTTTGGCTTTTAGGCTTAAGGAGGAGATGATAATGAGAAAAATCAAACCAGATGCAGCGGTTTATTCGACTTTAATCAGTGGGCTTTTCAAGCTTGGTAGGAAAGGGGAGGTTTTTGGGCTTCTTGAGGAAATGAGCGAGTATGGGTGCAAACTTAATACTGTAACGTACAATGCAATGATTAATGGGTTTTGCAAGGAGAAGGATTTTGAAGCAGCATATAAAGTTTTGGATGAGATGGTGGAGAAGGGGTGTGAGCCAGATGTTATTAGTTACAATGTGATTCTTGGTGGACTATGTAAGGAAGGGAAATGGAGTGAAGCAAATGATTTGTTCGAAGATTTACCAAGACGTGGATGTACTCCGGATGTGGTTTCATATCGAATAATGTTTACTGGACTTTGTGATTGCAGGCAGTTCAGAGAAGCAGCATTTATTTTAGATGAGCTGATCTTCAAGGGTTATGCACCCCATTGTCTAAGTGCACATAAACTTGTTGAGGGGTTGTGTCGGGAAGGTGATATGGAGTTGTTAAGGACAGTTTTAACTAGTCTGGGAAACGGAAATGTTCTTCATGTGGACACCTGGGCAATGGTGATTTCGATGGTATGCAAGAAGGAGAAGCTTTCAAATGTGTCTGAGCTTGTTGATACTTTGCTAGTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

463

Amino Acids

52.59

Weight (kDa)

8.16

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53330 AT1G53330
fragaria_vesca FvH4_5g12530
malus_domestica MD14G1223500.v1.1
prunus_persica Prupe.5G218700_v2.0.a1
pyrus_communis pycom06g18980 pycom14g18480
rosa_chinensis RchiOBHm_Chr7g0184831
rosa_laevigata RLG00000004951
rosa_multiflora Rmu_ssc0000289.1_g000014
rosa_roxburghii Rroxscaffold_3G00269350
rosa_rugosa Rorug06G0465200
rosa_samantha Rh7AG077700 Rh7BG069600 Rh7CG070400 Rh7DG069800
rosa_wichuraiana Rw7G005770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 658
AccB7I CCANNNNNTGG 2 cut(s) 199, 1073
AccI GTMKAC 1 cut(s) 680
AccII CGCG 3 cut(s) 180, 288, 446
AccIII TCCGGA 1 cut(s) 1084
AciI CCGC 5 cut(s) 133, 178, 235, 662, 779
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 5 cut(s) 327, 367, 419, 559, 601
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 4 cut(s) 463, 503, 890, 1081
AfiI CCNNNNNNNGG 3 cut(s) 199, 562, 1073
AflII CTTAAG 1 cut(s) 737
AhlI ACTAGT 1 cut(s) 1268
AjiI CACGTC 1 cut(s) 1073
AjnI CCWGG 1 cut(s) 1304
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 7 cut(s) 172, 485, 620, 814, 1168, 1345, 1363
AluI AGCT 7 cut(s) 172, 485, 620, 814, 1168, 1345, 1363
Alw21I GWGCWC 3 cut(s) 310, 528, 1207
Alw44I GTGCAC 2 cut(s) 306, 1203
Aor13HI TCCGGA 1 cut(s) 1084
AoxI GGCC 2 cut(s) 125, 175
ApaLI GTGCAC 2 cut(s) 306, 1203
ApeKI GCWGC 3 cut(s) 776, 935, 1148
ApoI RAATTY 5 cut(s) 327, 367, 419, 559, 601
AseI ATTAAT 1 cut(s) 903
AspLEI GCGC 3 cut(s) 182, 290, 385
AspS9I GGNCC 3 cut(s) 61, 202, 351
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 6 cut(s) 157, 206, 577, 725, 1250, 1327
AsuII TTCGAA 3 cut(s) 494, 599, 1056
AvaII GGWCC 3 cut(s) 61, 202, 351
BaeGI GKGCMC 2 cut(s) 310, 1207
BanI GGYRCC 1 cut(s) 658
Bbv12I GWGCWC 3 cut(s) 310, 528, 1207
BbvI GCAGC 3 cut(s) 788, 947, 1160
BccI CCATC 2 cut(s) 952, 1318
BciT130I CCWGG 1 cut(s) 1306
BcnI CCSGG 1 cut(s) 452
BcuI ACTAGT 1 cut(s) 1268
BfaI CTAG 4 cut(s) 540, 645, 1269, 1379
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 5 cut(s) 178, 662, 777, 936, 1149
BlsI GCNGC 5 cut(s) 179, 663, 778, 937, 1150
BmcAI AGTACT 1 cut(s) 503
Bme1390I CCNGG 2 cut(s) 452, 1306
Bme18I GGWCC 3 cut(s) 61, 202, 351
BmgBI CACGTC 1 cut(s) 1073
BmgT120I GGNCC 3 cut(s) 61, 202, 351
BmiI GGNNCC 2 cut(s) 63, 660
BmrFI CCNGG 2 cut(s) 452, 1306
BmsI GCATC 3 cut(s) 445, 502, 763
Bpu14I TTCGAA 3 cut(s) 494, 599, 1056
BpuEI CTTGAG 2 cut(s) 374, 866
BpuMI CCSGG 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 450, 1305
BsaWI WCCGGW 2 cut(s) 348, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 956, 986
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 562, 1073
Bse1I ACTGG 1 cut(s) 1120
Bse3DI GCAATG 3 cut(s) 271, 903, 1317
BseAI TCCGGA 1 cut(s) 1084
BseBI CCWGG 1 cut(s) 1306
BseDI CCNNGG 2 cut(s) 450, 1305
BseGI GGATG 5 cut(s) 460, 514, 958, 1082, 1093
BseLI CCNNNNNNNGG 3 cut(s) 199, 562, 1073
BseMI GCAATG 3 cut(s) 271, 903, 1317
BseMII CTCAG 1 cut(s) 1350
BseNI ACTGG 1 cut(s) 1120
BseRI GAGGAG 2 cut(s) 102, 758
BseSI GKGCMC 2 cut(s) 310, 1207
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 788, 947, 1160
Bsh1236I CGCG 3 cut(s) 180, 288, 446
Bsh1285I CGRYCG 3 cut(s) 178, 286, 304
BshFI GGCC 2 cut(s) 127, 177
BshNI GGYRCC 1 cut(s) 658
BsiEI CGRYCG 3 cut(s) 178, 286, 304
BsiHKAI GWGCWC 3 cut(s) 310, 528, 1207
BsiSI CCGG 3 cut(s) 349, 452, 1085
BslI CCNNNNNNNGG 3 cut(s) 199, 562, 1073
BsmI GAATGC 2 cut(s) 10, 385
BsnI GGCC 2 cut(s) 127, 177
Bsp119I TTCGAA 3 cut(s) 494, 599, 1056
Bsp1286I GDGCHC 3 cut(s) 310, 528, 1207
Bsp13I TCCGGA 1 cut(s) 1084
Bsp143I GATC 1 cut(s) 1170
BspACI CCGC 5 cut(s) 133, 178, 235, 662, 779
BspANI GGCC 2 cut(s) 127, 177
BspCNI CTCAG 1 cut(s) 1351
BspEI TCCGGA 1 cut(s) 1084
BspFNI CGCG 3 cut(s) 180, 288, 446
BspLI GGNNCC 2 cut(s) 63, 660
BspT104I TTCGAA 3 cut(s) 494, 599, 1056
BspT107I GGYRCC 1 cut(s) 658
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 3 cut(s) 271, 903, 1317
BsrI ACTGG 1 cut(s) 1120
BssECI CCNNGG 2 cut(s) 450, 1305
BssMI GATC 1 cut(s) 1170
BssNAI GTATAC 1 cut(s) 681
Bst1107I GTATAC 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 1306
Bst4CI ACNGT 5 cut(s) 284, 305, 355, 883, 1261
Bst6I CTCTTC 1 cut(s) 89
BstAFI CTTAAG 1 cut(s) 737
BstBI TTCGAA 3 cut(s) 494, 599, 1056
BstC8I GCNNGC 1 cut(s) 1133
BstDEI CTNAG 2 cut(s) 1199, 1359
BstF5I GGATG 5 cut(s) 460, 514, 958, 1082, 1093
BstFNI CGCG 3 cut(s) 180, 288, 446
BstHHI GCGC 3 cut(s) 182, 290, 385
BstKTI GATC 1 cut(s) 1173
BstMBI GATC 1 cut(s) 1170
BstMCI CGRYCG 3 cut(s) 178, 286, 304
BstMWI GCNNNNNNNGC 1 cut(s) 811
BstNI CCWGG 1 cut(s) 1306
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 450, 1304
BstSLI GKGCMC 2 cut(s) 310, 1207
BstUI CGCG 3 cut(s) 180, 288, 446
BstV1I GCAGC 3 cut(s) 788, 947, 1160
BstZ17I GTATAC 1 cut(s) 681
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 2 cut(s) 127, 177
BtrI CACGTC 1 cut(s) 1073
BtsCI GGATG 5 cut(s) 460, 514, 958, 1082, 1093
BtsIMutI CAGTG 1 cut(s) 805
Cac8I GCNNGC 1 cut(s) 1133
CfoI GCGC 3 cut(s) 182, 290, 385
Cfr13I GGNCC 3 cut(s) 61, 202, 351
CpoI CGGWCCG 1 cut(s) 351
Csp6I GTAC 4 cut(s) 462, 502, 889, 1080
CspI CGGWCCG 1 cut(s) 351
CviAII CATG 2 cut(s) 459, 1295
CviQI GTAC 4 cut(s) 462, 502, 889, 1080
DdeI CTNAG 2 cut(s) 1199, 1359
DpnI GATC 1 cut(s) 1172
DpnII GATC 1 cut(s) 1170
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 127
Eco47I GGWCC 3 cut(s) 61, 202, 351
Eco52I CGGCCG 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 2 cut(s) 367, 559
EcoRII CCWGG 1 cut(s) 1304
EcoT22I ATGCAT 1 cut(s) 460
FaeI CATG 2 cut(s) 462, 1298
FatI CATG 2 cut(s) 458, 1294
FauI CCCGC 1 cut(s) 242
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 5 cut(s) 178, 662, 777, 936, 1149
FokI GGATG 5 cut(s) 467, 521, 965, 1089, 1100
Fsp4HI GCNGC 5 cut(s) 178, 662, 777, 936, 1149
FspBI CTAG 4 cut(s) 540, 645, 1269, 1379
GlaI GCGC 3 cut(s) 181, 289, 384
GluI GCNGC 5 cut(s) 178, 662, 777, 936, 1149
HaeIII GGCC 2 cut(s) 127, 177
HapII CCGG 3 cut(s) 349, 452, 1085
HhaI GCGC 3 cut(s) 182, 290, 385
Hin1II CATG 2 cut(s) 462, 1298
Hin6I GCGC 3 cut(s) 180, 288, 383
HinP1I GCGC 3 cut(s) 180, 288, 383
HindIII AAGCTT 4 cut(s) 483, 618, 812, 1343
HinfI GANTC 2 cut(s) 104, 1003
HpaII CCGG 3 cut(s) 349, 452, 1085
HphI GGTGA 6 cut(s) 157, 206, 577, 725, 1250, 1327
Hpy166II GTNNAC 6 cut(s) 308, 681, 1013, 1113, 1205, 1300
Hpy188I TCNGA 3 cut(s) 103, 1142, 1360
Hpy188III TCNNGA 4 cut(s) 540, 845, 1085, 1232
Hpy8I GTNNAC 6 cut(s) 308, 681, 1013, 1113, 1205, 1300
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 9 cut(s) 37, 52, 221, 514, 916, 961, 1019, 1229, 1330
HpyCH4III ACNGT 5 cut(s) 284, 305, 355, 883, 1261
HpyCH4IV ACGT 4 cut(s) 49, 626, 887, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 811
HpyF3I CTNAG 2 cut(s) 1199, 1359
HpySE526I ACGT 4 cut(s) 49, 626, 887, 1072
Hsp92II CATG 2 cut(s) 462, 1298
HspAI GCGC 3 cut(s) 180, 288, 383
Kpn2I TCCGGA 1 cut(s) 1084
Kzo9I GATC 1 cut(s) 1170
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 3 cut(s) 788, 947, 1160
LweI GCATC 3 cut(s) 445, 502, 763
MaeI CTAG 4 cut(s) 540, 645, 1269, 1379
MaeII ACGT 4 cut(s) 49, 626, 887, 1072
MaeIII GTNAC 3 cut(s) 565, 883, 992
MalI GATC 1 cut(s) 1172
MboI GATC 1 cut(s) 1170
MboII GAAGA 4 cut(s) 76, 1070, 1165, 1283
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 3 cut(s) 310, 528, 1207
MluCI AATT 7 cut(s) 66, 218, 327, 367, 419, 559, 601
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 9 cut(s) 49, 123, 167, 628, 694, 736, 823, 841, 1213
Mph1103I ATGCAT 1 cut(s) 460
MroI TCCGGA 1 cut(s) 1084
MseI TTAA 6 cut(s) 738, 794, 876, 903, 1253, 1265
MspA1I CMGCKG 1 cut(s) 779
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 3 cut(s) 349, 452, 1085
MspR9I CCNGG 2 cut(s) 452, 1306
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 2 cut(s) 10, 385
MvaI CCWGG 1 cut(s) 1306
MvnI CGCG 3 cut(s) 180, 288, 446
MwoI GCNNNNNNNGC 1 cut(s) 811
NciI CCSGG 1 cut(s) 452
NdeII GATC 1 cut(s) 1170
NlaIII CATG 2 cut(s) 462, 1298
NlaIV GGNNCC 2 cut(s) 63, 660
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 565
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 462
NspV TTCGAA 3 cut(s) 494, 599, 1056
PceI AGGCCT 1 cut(s) 127
PctI GAATGC 2 cut(s) 10, 385
PfeI GAWTC 2 cut(s) 104, 1003
PflMI CCANNNNNTGG 2 cut(s) 199, 1073
PkrI GCNGC 5 cut(s) 179, 663, 778, 937, 1150
PpuMI RGGWCCY 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 903
PsiI TTATAA 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 1304
PspGI CCWGG 1 cut(s) 1304
PspN4I GGNNCC 2 cut(s) 63, 660
PspPI GGNCC 3 cut(s) 61, 202, 351
PspPPI RGGWCCY 1 cut(s) 61
RsaI GTAC 4 cut(s) 463, 503, 890, 1081
RsaNI GTAC 4 cut(s) 462, 502, 889, 1080
Rsr2I CGGWCCG 1 cut(s) 351
RsrII CGGWCCG 1 cut(s) 351
SaqAI TTAA 6 cut(s) 738, 794, 876, 903, 1253, 1265
SatI GCNGC 5 cut(s) 178, 662, 777, 936, 1149
Sau3AI GATC 1 cut(s) 1170
Sau96I GGNCC 3 cut(s) 61, 202, 351
ScaI AGTACT 1 cut(s) 503
ScrFI CCNGG 2 cut(s) 452, 1306
SduI GDGCHC 3 cut(s) 310, 528, 1207
SfaNI GCATC 3 cut(s) 445, 502, 763
SfuI TTCGAA 3 cut(s) 494, 599, 1056
SinI GGWCC 3 cut(s) 61, 202, 351
SmlI CTYRAG 3 cut(s) 389, 737, 845
SmoI CTYRAG 3 cut(s) 389, 737, 845
SpeI ACTAGT 1 cut(s) 1268
Sse9I AATT 7 cut(s) 66, 218, 327, 367, 419, 559, 601
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 5 cut(s) 133, 178, 235, 662, 779
SspMI CTAG 4 cut(s) 540, 645, 1269, 1379
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 450, 1304
TaaI ACNGT 5 cut(s) 284, 305, 355, 883, 1261
TaiI ACGT 4 cut(s) 52, 629, 890, 1075
TaqI TCGA 8 cut(s) 321, 494, 528, 599, 788, 1056, 1102, 1322
TasI AATT 7 cut(s) 66, 218, 327, 367, 419, 559, 601
TatI WGTACW 3 cut(s) 461, 501, 1079
TauI GCSGC 2 cut(s) 180, 664
TfiI GAWTC 2 cut(s) 104, 1003
Tru1I TTAA 6 cut(s) 738, 794, 876, 903, 1253, 1265
Tru9I TTAA 6 cut(s) 738, 794, 876, 903, 1253, 1265
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 3 cut(s) 776, 935, 1148
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 8 cut(s) 17, 339, 360, 494, 546, 707, 1086, 1283
TspGWI ACGGA 1 cut(s) 1296
TspRI CASTG 1 cut(s) 805
Van91I CCANNNNNTGG 2 cut(s) 199, 1073
Vha464I CTTAAG 1 cut(s) 737
VneI GTGCAC 2 cut(s) 306, 1203
VpaK11BI GGWCC 3 cut(s) 61, 202, 351
VspI ATTAAT 1 cut(s) 903
XapI RAATTY 5 cut(s) 327, 367, 419, 559, 601
XbaI TCTAGA 1 cut(s) 539
XceI RCATGY 1 cut(s) 462
XmiI GTMKAC 1 cut(s) 680
XspI CTAG 4 cut(s) 540, 645, 1269, 1379
ZrmI AGTACT 1 cut(s) 503
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.