AT1G53345

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015979
Physical Location & Seq
Forward (+)
19902474 .. 19903808
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53345.1

Sequence Viewer

Length: 978 bp
ATGAATCTTGGAGTGAAGAAGATGGCTGTGCTTTACCATTATCCTTGCCATGACGGTGTTTTCGCAGCTTTAGCTGCTCATCTCTACTTCTCAGCAAAGTCAATCCCTTCACTGTTCTTCCCCAACACAGTCTACTCTCCAATCACAATCAACCAACTTCCACTTCAAGACATCAGTCATCTCTATCTTTTTGATTTCACTGGACCTCCAGGTTTCGTTCACCAAGTCTCTCCTAAAGTCGACAATGTCGTGATCCTCGATCACCATAAAACCGCTATTGATAGCTTAGGTGATGTCTCTTTGACTTGCAAGAACGTTACTAGTGTTTTGGATATAGAGAGAAGTGGTGCGACTATTGCGTTTGACTATTTTACTCAGAAGTTGGTTGAAGAAAGTAGAGGAAGTTGCAAAGAGATGAATGATTTCAAGAGAATGAGACGTGTTTTCGAGTATATTGAAGACGCGGATATATGGAAGTGGGAGTTACCAGAGAGCAAAGCTTTCAACAGTGGAATATTGGACTTAAAGATTGAATACGACTTCAATAAGAACCAATCTTTGTTTGATCAGCTACTCTCATTGGATCATGAAAGTGTGATCAACAGAGGAAAACAGAGTTTGTCCAAGAAACATAAACTGATTCACGAGGTGTTGGAACAGTCATATGAGATTGTTCTTGGAGGTGATGAGGAGTTTGGACGGTGTTTAGCTGTAAATGCTGATGAGATTACAGAGCTTAGAAGCGAGTTAGGGAATCAATTGGCTGAGAAGAGTAAGAATCTGAGTTTACGAGGTGTTGGAGCTGTTGTTTACAGAGTTCCTGAGCTTGGAGATGAGAATAAACTGAAAATAAGTTTGAGGAGTGTTGCAGAAGAAGACACAACACCGGTTTCACAGCGATTCGGAGGTGGTGGTCATAAAAACGCAAGCTCCTTCTTGTTAAACTCCATGGAGTTCGAGCAATGGAAGGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.68

Weight (kDa)

5.69

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53345
fragaria_vesca FvH4_5g18120
malus_domestica MD06G1236700.v1.1
prunus_persica Prupe.5G241200_v2.0.a1 Prupe.5G241200_v2.0.a1
pyrus_communis pycom06g21240 pycom14g20480
rosa_chinensis RchiOBHm_Chr7g0177491
rosa_laevigata RLG00000005533
rosa_multiflora Rmu_sc0028619.1_g000002
rosa_roxburghii Rroxscaffold_3G00275830
rosa_rugosa Rorug06G0406500
rosa_samantha Rh7CG006300 Rh7DG005800
rosa_wichuraiana Rw7G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 132, 240
AccII CGCG 1 cut(s) 464
AciI CCGC 2 cut(s) 273, 464
AclI AACGTT 1 cut(s) 315
AclWI GGATC 2 cut(s) 247, 591
AdeI CACNNNGTG 1 cut(s) 649
AfiI CCNNNNNNNGG 1 cut(s) 827
AflIII ACRYGT 1 cut(s) 439
AgeI ACCGGT 1 cut(s) 886
AgsI TTSAA 7 cut(s) 167, 389, 427, 458, 505, 533, 544
AhlI ACTAGT 1 cut(s) 320
AjiI CACGTC 1 cut(s) 440
AjnI CCWGG 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
Alw26I GTCTC 3 cut(s) 232, 301, 430
AlwI GGATC 2 cut(s) 247, 591
ApeKI GCWGC 2 cut(s) 65, 74
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AsiGI ACCGGT 1 cut(s) 886
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 4 cut(s) 212, 254, 302, 695
AvaII GGWCC 1 cut(s) 203
BauI CACGAG 1 cut(s) 644
BbsI GAAGAC 2 cut(s) 465, 882
BbvI GCAGC 2 cut(s) 61, 77
BccI CCATC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 2 cut(s) 565, 597
BcoDI GTCTC 3 cut(s) 232, 301, 430
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 66, 75
BlsI GCNGC 2 cut(s) 67, 76
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 210
BoxI GACNNNNGTC 1 cut(s) 174
BpiI GAAGAC 2 cut(s) 465, 882
BpmI CTGGAG 1 cut(s) 192
Bpu10I CCTNAGC 2 cut(s) 286, 822
BsaJI CCNNGG 1 cut(s) 948
BsaWI WCCGGW 1 cut(s) 886
BsaXI ACNNNNNCTCC 6 cut(s) 190, 220, 792, 822, 914, 944
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse118I RCCGGY 1 cut(s) 886
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 968
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 948
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 5 cut(s) 105, 389, 756, 773, 813
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 704, 874
BseXI GCAGC 2 cut(s) 61, 77
Bsh1236I CGCG 1 cut(s) 464
BshTI ACCGGT 1 cut(s) 886
BsiSI CCGG 1 cut(s) 887
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 3 cut(s) 232, 301, 430
BsmBI CGTCTC 1 cut(s) 430
Bsp143I GATC 5 cut(s) 252, 259, 565, 583, 597
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 2 cut(s) 273, 464
BspCNI CTCAG 5 cut(s) 104, 388, 757, 774, 814
BspFNI CGCG 1 cut(s) 464
BspHI TCATGA 1 cut(s) 586
BspPI GGATC 2 cut(s) 247, 591
BsrDI GCAATG 1 cut(s) 968
BsrFI RCCGGY 1 cut(s) 886
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 886
BssECI CCNNGG 1 cut(s) 948
BssMI GATC 5 cut(s) 252, 259, 565, 583, 597
BssSI CACGAG 1 cut(s) 644
BssT1I CCWWGG 1 cut(s) 948
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 6 cut(s) 56, 114, 130, 509, 660, 702
Bst6I CTCTTC 1 cut(s) 764
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 7 cut(s) 91, 286, 375, 737, 765, 782, 822
BstDSI CCRYGG 1 cut(s) 948
BstFNI CGCG 1 cut(s) 464
BstKTI GATC 5 cut(s) 255, 262, 568, 586, 600
BstMAI GTCTC 3 cut(s) 232, 301, 430
BstMBI GATC 5 cut(s) 252, 259, 565, 583, 597
BstMWI GCNNNNNNNGC 4 cut(s) 71, 74, 356, 716
BstNI CCWGG 1 cut(s) 210
BstPAI GACNNNNGTC 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 208
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 61, 77
BstV2I GAAGAC 2 cut(s) 465, 882
BtgI CCRYGG 1 cut(s) 948
BtrI CACGTC 1 cut(s) 440
BtsIMutI CAGTG 3 cut(s) 110, 198, 514
Cac8I GCNNGC 1 cut(s) 928
CciI TCATGA 1 cut(s) 586
Cfr10I RCCGGY 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 470
CspAI ACCGGT 1 cut(s) 886
CviAII CATG 3 cut(s) 50, 587, 949
DdeI CTNAG 7 cut(s) 91, 286, 375, 737, 765, 782, 822
DpnI GATC 5 cut(s) 254, 261, 567, 585, 599
DpnII GATC 5 cut(s) 252, 259, 565, 583, 597
DraIII CACNNNGTG 1 cut(s) 649
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
Eco130I CCWWGG 1 cut(s) 948
Eco47I GGWCC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 948
ErhI CCWWGG 1 cut(s) 948
Esp3I CGTCTC 1 cut(s) 430
FaeI CATG 3 cut(s) 53, 590, 952
FatI CATG 3 cut(s) 49, 586, 948
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 2 cut(s) 565, 597
FblI GTMKAC 2 cut(s) 132, 240
Fnu4HI GCNGC 2 cut(s) 66, 75
Fsp4HI GCNGC 2 cut(s) 66, 75
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 66, 75
GsuI CTGGAG 1 cut(s) 192
HapII CCGG 1 cut(s) 887
HgaI GACGC 1 cut(s) 470
Hin1II CATG 3 cut(s) 53, 590, 952
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 5 cut(s) 4, 640, 754, 778, 900
HpaII CCGG 1 cut(s) 887
HphI GGTGA 4 cut(s) 212, 254, 302, 695
Hpy166II GTNNAC 5 cut(s) 133, 220, 241, 788, 811
Hpy188I TCNGA 3 cut(s) 378, 783, 905
Hpy188III TCNNGA 6 cut(s) 167, 250, 427, 587, 644, 821
Hpy8I GTNNAC 5 cut(s) 133, 220, 241, 788, 811
HpyAV CCTTC 3 cut(s) 117, 943, 961
HpyCH4III ACNGT 6 cut(s) 56, 114, 130, 509, 660, 702
HpyCH4IV ACGT 2 cut(s) 315, 439
HpyCH4V TGCA 3 cut(s) 309, 408, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 74, 356, 716
HpyF3I CTNAG 7 cut(s) 91, 286, 375, 737, 765, 782, 822
HpySE526I ACGT 2 cut(s) 315, 439
Hsp92II CATG 3 cut(s) 53, 590, 952
Ksp22I TGATCA 2 cut(s) 565, 597
Kzo9I GATC 5 cut(s) 252, 259, 565, 583, 597
LmnI GCTCC 2 cut(s) 800, 935
LpnPI CCDG 6 cut(s) 186, 195, 222, 501, 834, 900
Lsp1109I GCAGC 2 cut(s) 61, 77
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 315, 439
MaeIII GTNAC 2 cut(s) 316, 483
MalI GATC 5 cut(s) 254, 261, 567, 585, 599
MboI GATC 5 cut(s) 252, 259, 565, 583, 597
MboII GAAGA 8 cut(s) 28, 31, 109, 401, 470, 781, 884, 887
MfeI CAATTG 1 cut(s) 758
MluCI AATT 1 cut(s) 758
MmeI TCCRAC 2 cut(s) 633, 778
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 2 cut(s) 524, 941
MslI CAYNNNNRTG 2 cut(s) 54, 591
MspI CCGG 1 cut(s) 887
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 758
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 4 cut(s) 71, 74, 356, 716
NcoI CCATGG 1 cut(s) 948
NdeI CATATG 1 cut(s) 664
NdeII GATC 5 cut(s) 252, 259, 565, 583, 597
NlaIII CATG 3 cut(s) 53, 590, 952
PagI TCATGA 1 cut(s) 586
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 255
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 5 cut(s) 4, 640, 754, 778, 900
PflFI GACNNNGTC 1 cut(s) 245
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 2 cut(s) 67, 76
PshAI GACNNNNGTC 1 cut(s) 174
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 245
RseI CAYNNNNRTG 2 cut(s) 54, 591
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 524, 941
SatI GCNGC 2 cut(s) 66, 75
Sau3AI GATC 5 cut(s) 252, 259, 565, 583, 597
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 210
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 54, 591
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 1 cut(s) 758
SsiI CCGC 2 cut(s) 273, 464
SspI AATATT 1 cut(s) 516
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 948
TaaI ACNGT 6 cut(s) 56, 114, 130, 509, 660, 702
TaiI ACGT 2 cut(s) 318, 442
TaqI TCGA 4 cut(s) 240, 258, 447, 957
TasI AATT 1 cut(s) 758
TfiI GAWTC 5 cut(s) 4, 640, 754, 778, 900
Tru1I TTAA 2 cut(s) 524, 941
Tru9I TTAA 2 cut(s) 524, 941
TscAI CASTG 3 cut(s) 117, 205, 514
TseI GCWGC 2 cut(s) 65, 74
TspDTI ATGAA 3 cut(s) 17, 431, 603
TspRI CASTG 3 cut(s) 117, 205, 514
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 203
XmiI GTMKAC 2 cut(s) 132, 240
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.