FvH4_5g18120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015979
Physical Location & Seq
Forward (+)
10417957 .. 10421397
3441 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18120.t3

Sequence Viewer

Length: 954 bp
ATGAGAAGACCGGCGGTGCTGTACCACTATCCATGCCCGGACGGCGCGTTCGCCGCACTCGCGGCGCATCTCTACTTCTCTTCCAAGTCAATCCAACCCTTCTTCTTCCCTAACGCCGTCTACAGCCCCGTCACGGCGCAAAGCCTCCCGCTTTCCGACATCGACGAGCTCTACCTCCTCGACTTCGTGGGCCCACCTGGGTTTGTCCAGGAGGTCTCTTTGAAGGTACCCAACGTCGTCGTTTTGGACCACCACAAGACGGCGGTGGGGAGAGTCGGCGGGGTGAATGTGACGAGTGTTTTGGATATGAAGAGGAGCGGTGCTACAATTGCTTTTGATTATTTCAGGGGGAAGGTTGACGTCGACGGCGGCGAGACGGCGAGGTTTGACGGCGTTAGGAGGGTGTTTGAGTATATTGAGGATGGGGATTTGTGGCGGTGGAGGCTTCCGGATAGTAAGGCTTTTAGTAGCGGGTTTAAAGATTTGAACTTGCAGTACGACGTCGGTTTGAACCCGGCTCTGTTTCAGCAGCTGCTTTCGTTGGACTTGGAGTGTTTGATTAGTCAGGGAATGGTGAGCTTGTCAGAGAAGCAGAAATTGATAGAGGAGGCTCTGAGTCAGTCTTATGAGATTAAGCTTGGAGGTGGAGCTTTTGGTCATTGCCTGGCTGTGAATGCAGATTCTATATCAGAGTTGAGGAGTGAACTCGGACATCAGTTGGCTACTAAAAGCCGCAGTCTCAACTTGAGGGGTATTGGAGCTGTTGTATACAAAGTCCCTGAACTTGAAAATGACGAATTGCTGAAGATAAGCCTCAGGAGTGTGGACAGTGAAGACACAACTCGTATCTCGCAGGAATTTGGAGGCGGTGGACATAGAAATGCCAGTTCTTTCATGTTAGGCTCCGCAGAATTTGAGCAGTGGAAGGTTGGCCAAGCAATCATTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

34.77

Weight (kDa)

5.32

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53345
fragaria_vesca FvH4_5g18120
malus_domestica MD06G1236700.v1.1
prunus_persica Prupe.5G241200_v2.0.a1 Prupe.5G241200_v2.0.a1
pyrus_communis pycom06g21240 pycom14g20480
rosa_chinensis RchiOBHm_Chr7g0177491
rosa_laevigata RLG00000005533
rosa_multiflora Rmu_sc0028619.1_g000002
rosa_roxburghii Rroxscaffold_3G00275830
rosa_rugosa Rorug06G0406500
rosa_samantha Rh7CG006300 Rh7DG005800
rosa_wichuraiana Rw7G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 363, 504
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 318
AccI GTMKAC 3 cut(s) 120, 363, 768
AccII CGCG 2 cut(s) 47, 62
AccIII TCCGGA 1 cut(s) 448
AcoI YGGCCR 1 cut(s) 931
AcsI RAATTY 2 cut(s) 857, 911
AcuI CTGAAG 1 cut(s) 824
AcyI GRCGYC 2 cut(s) 360, 501
AfaI GTAC 3 cut(s) 23, 228, 497
AfiI CCNNNNNNNGG 2 cut(s) 133, 259
AgsI TTSAA 4 cut(s) 223, 487, 511, 788
AjnI CCWGG 3 cut(s) 196, 207, 663
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 6 cut(s) 169, 532, 579, 637, 650, 761
AluI AGCT 6 cut(s) 169, 532, 579, 637, 650, 761
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 3 cut(s) 220, 368, 743
AlwNI CAGNNNCTG 1 cut(s) 532
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 2 cut(s) 190, 931
ApaI GGGCCC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 529, 532
ApoI RAATTY 2 cut(s) 857, 911
ArsI GACNNNNNNTTYG 4 cut(s) 32, 64, 283, 315
Asp718I GGTACC 1 cut(s) 226
AspLEI GCGC 3 cut(s) 47, 67, 139
AspS9I GGNCC 3 cut(s) 190, 191, 247
AsuC2I CCSGG 2 cut(s) 38, 515
AsuHPI GGTGA 2 cut(s) 295, 586
AvaII GGWCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 815
BaeGI GKGCMC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 933
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 171, 194
BbsI GAAGAC 2 cut(s) 13, 840
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 519, 541
BccI CCATC 1 cut(s) 416
BceAI ACGGC 7 cut(s) 58, 101, 150, 276, 382, 393, 406
BciT130I CCWGG 3 cut(s) 198, 209, 665
BcnI CCSGG 2 cut(s) 38, 515
BcoDI GTCTC 3 cut(s) 220, 368, 743
BfmI CTRYAG 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 6 cut(s) 54, 63, 370, 530, 533, 733
BlsI GCNGC 6 cut(s) 55, 64, 371, 531, 534, 734
Bme1390I CCNGG 5 cut(s) 38, 198, 209, 515, 665
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 190, 191, 247
BmiI GGNNCC 3 cut(s) 192, 228, 904
BmrFI CCNGG 5 cut(s) 38, 198, 209, 515, 665
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 2 cut(s) 13, 840
BpuEI CTTGAG 1 cut(s) 766
BpuMI CCSGG 2 cut(s) 38, 515
BsaHI GRCGYC 2 cut(s) 360, 501
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 259
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 885
Bse21I CCTNAGG 1 cut(s) 815
Bse3DI GCAATG 2 cut(s) 658, 942
BseAI TCCGGA 1 cut(s) 448
BseBI CCWGG 3 cut(s) 198, 209, 665
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 133, 259
BseMI GCAATG 2 cut(s) 658, 942
BseMII CTCAG 2 cut(s) 605, 829
BseNI ACTGG 1 cut(s) 885
BseRI GAGGAG 4 cut(s) 167, 328, 620, 712
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 2 cut(s) 519, 541
Bsh1236I CGCG 2 cut(s) 47, 62
BshFI GGCC 2 cut(s) 192, 933
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 4 cut(s) 11, 38, 449, 515
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 2 cut(s) 133, 259
BsmAI GTCTC 3 cut(s) 220, 368, 743
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 761
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 2 cut(s) 192, 933
Bso31I GGTCTC 1 cut(s) 220
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 171, 194
Bsp13I TCCGGA 1 cut(s) 448
BspANI GGCC 2 cut(s) 192, 933
BspCNI CTCAG 2 cut(s) 606, 828
BspEI TCCGGA 1 cut(s) 448
BspFNI CGCG 2 cut(s) 47, 62
BspLI GGNNCC 3 cut(s) 192, 228, 904
BspT107I GGYRCC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 658, 942
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 885
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 197
BssNAI GTATAC 1 cut(s) 769
BssNI GRCGYC 2 cut(s) 360, 501
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 3 cut(s) 198, 209, 665
Bst4CI ACNGT 1 cut(s) 830
Bst6I CTCTTC 2 cut(s) 85, 305
BstACI GRCGYC 2 cut(s) 360, 501
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 1 cut(s) 949
BstDEI CTNAG 2 cut(s) 614, 815
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 2 cut(s) 47, 62
BstHHI GCGC 3 cut(s) 47, 67, 139
BstMAI GTCTC 3 cut(s) 220, 368, 743
BstMWI GCNNNNNNNGC 8 cut(s) 42, 53, 59, 62, 329, 442, 674, 944
BstNI CCWGG 3 cut(s) 198, 209, 665
BstSCI CCNGG 5 cut(s) 36, 196, 207, 513, 663
BstSFI CTRYAG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 194
BstUI CGCG 2 cut(s) 47, 62
BstV1I GCAGC 2 cut(s) 519, 541
BstV2I GAAGAC 2 cut(s) 13, 840
BstZ17I GTATAC 1 cut(s) 769
Bsu36I CCTNAGG 1 cut(s) 815
BsuRI GGCC 2 cut(s) 192, 933
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 926
BtsIMutI CAGTG 2 cut(s) 835, 926
Cac8I GCNNGC 1 cut(s) 949
CaiI CAGNNNCTG 1 cut(s) 532
CfoI GCGC 3 cut(s) 47, 67, 139
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 190, 191, 247
Csp6I GTAC 3 cut(s) 22, 227, 496
CviAII CATG 2 cut(s) 33, 895
CviQI GTAC 3 cut(s) 22, 227, 496
DdeI CTNAG 2 cut(s) 614, 815
DraI TTTAAA 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 931
Eam1104I CTCTTC 2 cut(s) 85, 305
EarI CTCTTC 2 cut(s) 85, 305
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 171, 194
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 824
Eco81I CCTNAGG 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 169
EcoRII CCWGG 3 cut(s) 196, 207, 663
EcoT38I GRGCYC 2 cut(s) 171, 194
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 2 cut(s) 36, 898
FaiI YATR 8 cut(s) 34, 308, 414, 627, 686, 769, 876, 896
FaqI GGGAC 1 cut(s) 761
FatI CATG 2 cut(s) 32, 894
FauI CCCGC 3 cut(s) 156, 272, 464
FblI GTMKAC 3 cut(s) 120, 363, 768
Fnu4HI GCNGC 6 cut(s) 54, 63, 370, 530, 533, 733
FokI GGATG 1 cut(s) 434
FriOI GRGCYC 2 cut(s) 171, 194
Fsp4HI GCNGC 6 cut(s) 54, 63, 370, 530, 533, 733
GlaI GCGC 3 cut(s) 46, 66, 138
GluI GCNGC 6 cut(s) 54, 63, 370, 530, 533, 733
HaeIII GGCC 2 cut(s) 192, 933
HapII CCGG 4 cut(s) 11, 38, 449, 515
HhaI GCGC 3 cut(s) 47, 67, 139
Hin1I GRCGYC 2 cut(s) 360, 501
Hin1II CATG 2 cut(s) 36, 898
Hin6I GCGC 3 cut(s) 45, 65, 137
HinP1I GCGC 3 cut(s) 45, 65, 137
HincII GTYRAC 2 cut(s) 358, 364
HindII GTYRAC 2 cut(s) 358, 364
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 3 cut(s) 273, 616, 680
HpaII CCGG 4 cut(s) 11, 38, 449, 515
HphI GGTGA 2 cut(s) 295, 586
Hpy166II GTNNAC 7 cut(s) 121, 358, 364, 704, 769, 826, 872
Hpy188I TCNGA 5 cut(s) 157, 586, 615, 691, 710
Hpy188III TCNNGA 2 cut(s) 449, 817
Hpy8I GTNNAC 7 cut(s) 121, 358, 364, 704, 769, 826, 872
Hpy99I CGWCG 7 cut(s) 167, 239, 242, 365, 368, 503, 506
HpyAV CCTTC 4 cut(s) 109, 217, 346, 919
HpyCH4III ACNGT 1 cut(s) 830
HpyCH4IV ACGT 3 cut(s) 234, 360, 501
HpyCH4V TGCA 2 cut(s) 493, 677
HpyF10VI GCNNNNNNNGC 8 cut(s) 42, 53, 59, 62, 329, 442, 674, 944
HpyF3I CTNAG 2 cut(s) 614, 815
HpySE526I ACGT 3 cut(s) 234, 360, 501
Hsp92I GRCGYC 2 cut(s) 360, 501
Hsp92II CATG 2 cut(s) 36, 898
HspAI GCGC 3 cut(s) 45, 65, 137
Kpn2I TCCGGA 1 cut(s) 448
KpnI GGTACC 1 cut(s) 230
LmnI GCTCC 4 cut(s) 315, 647, 758, 908
Lsp1109I GCAGC 2 cut(s) 519, 541
LweI GCATC 1 cut(s) 76
MaeII ACGT 3 cut(s) 234, 360, 501
MaeIII GTNAC 2 cut(s) 130, 289
MbiI CCGCTC 1 cut(s) 318
MboII GAAGA 7 cut(s) 18, 72, 94, 97, 322, 817, 845
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 171, 194
MlsI TGGCCA 1 cut(s) 933
MluCI AATT 5 cut(s) 327, 596, 797, 857, 911
MluNI TGGCCA 1 cut(s) 933
MlyI GAGTC 2 cut(s) 282, 625
MmeI TCCRAC 3 cut(s) 118, 180, 522
Mox20I TGGCCA 1 cut(s) 933
MroI TCCGGA 1 cut(s) 448
MscI TGGCCA 1 cut(s) 933
MseI TTAA 2 cut(s) 477, 633
MslI CAYNNNNRTG 1 cut(s) 879
Msp20I TGGCCA 1 cut(s) 933
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 4 cut(s) 11, 38, 449, 515
MspR9I CCNGG 5 cut(s) 38, 198, 209, 515, 665
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 3 cut(s) 198, 209, 665
MvnI CGCG 2 cut(s) 47, 62
MwoI GCNNNNNNNGC 8 cut(s) 42, 53, 59, 62, 329, 442, 674, 944
NciI CCSGG 2 cut(s) 38, 515
NlaIII CATG 2 cut(s) 36, 898
NlaIV GGNNCC 3 cut(s) 192, 228, 904
NmuCI GTSAC 2 cut(s) 130, 289
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 680
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 6 cut(s) 55, 64, 371, 531, 534, 734
PleI GAGTC 2 cut(s) 281, 624
PpsI GAGTC 2 cut(s) 281, 624
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 3 cut(s) 196, 207, 663
PspGI CCWGG 3 cut(s) 196, 207, 663
PspN4I GGNNCC 3 cut(s) 192, 228, 904
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 3 cut(s) 190, 191, 247
PsrI GAACNNNNNNTAC 2 cut(s) 479, 511
PstNI CAGNNNCTG 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 3 cut(s) 23, 228, 497
RsaNI GTAC 3 cut(s) 22, 227, 496
RseI CAYNNNNRTG 1 cut(s) 879
SacI GAGCTC 1 cut(s) 171
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 477, 633
SatI GCNGC 6 cut(s) 54, 63, 370, 530, 533, 733
Sau96I GGNCC 3 cut(s) 190, 191, 247
SchI GAGTC 2 cut(s) 282, 625
ScrFI CCNGG 5 cut(s) 38, 198, 209, 515, 665
SduI GDGCHC 2 cut(s) 171, 194
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 121
SgrDI CGTCGACG 1 cut(s) 362
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 5 cut(s) 327, 596, 797, 857, 911
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 5 cut(s) 36, 196, 207, 513, 663
TaaI ACNGT 1 cut(s) 830
TaiI ACGT 3 cut(s) 237, 363, 504
TaqI TCGA 3 cut(s) 162, 180, 363
TasI AATT 5 cut(s) 327, 596, 797, 857, 911
TauI GCSGC 4 cut(s) 56, 65, 372, 735
TfiI GAWTC 1 cut(s) 680
Tru1I TTAA 2 cut(s) 477, 633
Tru9I TTAA 2 cut(s) 477, 633
TscAI CASTG 2 cut(s) 835, 926
TseFI GTSAC 2 cut(s) 130, 289
TseI GCWGC 2 cut(s) 529, 532
Tsp45I GTSAC 2 cut(s) 130, 289
TspDTI ATGAA 2 cut(s) 323, 883
TspRI CASTG 2 cut(s) 835, 926
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 857, 911
XmiI GTMKAC 3 cut(s) 120, 363, 768
ZraI GACGTC 2 cut(s) 361, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.