Prupe.5G241200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015979
Physical Location & Seq
Forward (+)
18165005 .. 18168485
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G241200.1

Sequence Viewer

Length: 1005 bp
ATGAGCTGTGCAGCAGCTGCGTGCAGGAGCGCGAGAACCATGAAAGCGGCGGTGCTGTATCACTATCCTTGTCCAGACGGTGCGTTTGCTGCTTTGGCCGCCCACCTCTACTTCTCAGCCATGTCTATGGAAGAACTCCTCTTCTTCCCCAACACCGTCTACAGCCCCATCACCCCCCAACACCTCCCTCTCCACCAGATCGACCGCCTCTACCTCCTTGACTTTGTGGGTCCCCCTGGTTTTGTCCAGGAGATCTCTTCCAGGGTCCCCAGCGTCGTCGTTCTGGATCACCACAAGACTGCCCTCGAAACGACGCGCATTGGTGAAAACGTCACCGGCGTCCTAGACATGAACAGGAGCGGGGCCACCATTGCTTTTGATTACTTCAAAAGCAAAATTGACGGTGACAGTGGCAACAAGAACGAGGCGGTGGTTGCTCAGTTTGACAGAGTGAGGAGGCTGTTCGAATATGTGGAGGATGGGGATCTCTGGAGGTGGAGCCTCCCCAATAGTAAAGCTTTCAGTAGTGGGCTCAAAGATTTAAACTTTCAATACGACGTCGGCCTCAACCCGTCTTTGTTCCAACAACTGCTTTCTTTGGATTTGGAGTCCTTAATTAGTCAAGGAATGGCGAGCTTATCCAAAAAGCAGAAATTAATAGATGAAGCTCTCAATCAGTCTTATGAAATTGCACTTTGGGGTGGAGCCTTTGGACATTGCCTGGCTGTCAACGCAGATTCTATCTCAGAGTTGAGGAGTGAACTCGGACATCAATTAGCTACTAAAAGCCGTAGTCTAAACTTAAGGGGTATCGGGGCTGTTGTATACAGAGTCCCAGAGCTTGAAAATGACCAAATGCTTAAAATAAGCCTTAGGAGTGTGGACACCGAAGACACAACGCCCATCTCACAGGAGTTTGGAGGCGGTGGGCATCAAAGCGCTAGTTCCTTCATGTTAGGCTCTGCAGAATTCGAGCAGTGGAAGATTGGCTTCGTTGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

36.81

Weight (kDa)

5.38

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53345
fragaria_vesca FvH4_5g18120
malus_domestica MD06G1236700.v1.1
prunus_persica Prupe.5G241200_v2.0.a1 Prupe.5G241200_v2.0.a1
pyrus_communis pycom06g21240 pycom14g20480
rosa_chinensis RchiOBHm_Chr7g0177491
rosa_laevigata RLG00000005533
rosa_multiflora Rmu_sc0028619.1_g000002
rosa_roxburghii Rroxscaffold_3G00275830
rosa_rugosa Rorug06G0406500
rosa_samantha Rh7CG006300 Rh7DG005800
rosa_wichuraiana Rw7G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 561
AccBSI CCGCTC 1 cut(s) 360
AccI GTMKAC 2 cut(s) 159, 825
AccII CGCG 2 cut(s) 32, 316
AciI CCGC 7 cut(s) 47, 50, 99, 205, 360, 428, 924
AclWI GGATC 2 cut(s) 294, 492
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 968
AcyI GRCGYC 2 cut(s) 339, 558
AfeI AGCGCT 1 cut(s) 940
AflII CTTAAG 1 cut(s) 802
AgsI TTSAA 3 cut(s) 388, 551, 845
AjnI CCWGG 4 cut(s) 235, 246, 260, 720
AluBI AGCT 7 cut(s) 6, 17, 518, 636, 668, 779, 841
AluI AGCT 7 cut(s) 6, 17, 518, 636, 668, 779, 841
AlwI GGATC 2 cut(s) 294, 492
AlwNI CAGNNNCTG 1 cut(s) 17
Aor51HI AGCGCT 1 cut(s) 940
AoxI GGCC 3 cut(s) 96, 363, 562
ApeKI GCWGC 4 cut(s) 11, 14, 17, 89
ApoI RAATTY 1 cut(s) 968
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AseI ATTAAT 1 cut(s) 656
AspLEI GCGC 3 cut(s) 32, 318, 941
AspS9I GGNCC 3 cut(s) 230, 265, 363
AsuHPI GGTGA 5 cut(s) 163, 281, 325, 335, 416
AsuII TTCGAA 1 cut(s) 465
AvaII GGWCC 2 cut(s) 230, 265
AxyI CCTNAGG 1 cut(s) 872
BanII GRGCYC 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 897
BbvI GCAGC 4 cut(s) 4, 23, 26, 76
BccI CCATC 3 cut(s) 176, 473, 911
BceAI ACGGC 1 cut(s) 774
BciT130I CCWGG 4 cut(s) 237, 248, 262, 722
BfaI CTAG 2 cut(s) 344, 942
BfmI CTRYAG 2 cut(s) 160, 963
BfoI RGCGCY 1 cut(s) 942
BfrI CTTAAG 1 cut(s) 802
BglII AGATCT 1 cut(s) 252
BisI GCNGC 6 cut(s) 12, 15, 18, 48, 90, 99
BlsI GCNGC 6 cut(s) 13, 16, 19, 49, 91, 100
Bme1390I CCNGG 4 cut(s) 237, 248, 262, 722
Bme18I GGWCC 2 cut(s) 230, 265
BmgT120I GGNCC 3 cut(s) 230, 265, 363
BmiI GGNNCC 7 cut(s) 231, 232, 266, 267, 364, 500, 706
BmrFI CCNGG 4 cut(s) 237, 248, 262, 722
BmsI GCATC 1 cut(s) 940
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 1 cut(s) 511
Bpu14I TTCGAA 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 483
BsaHI GRCGYC 2 cut(s) 339, 558
BsaJI CCNNGG 2 cut(s) 235, 261
Bse118I RCCGGY 1 cut(s) 335
Bse21I CCTNAGG 1 cut(s) 872
Bse3DI GCAATG 2 cut(s) 369, 715
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 4 cut(s) 237, 248, 262, 722
BseDI CCNNGG 2 cut(s) 235, 261
BseGI GGATG 1 cut(s) 484
BseJI GATNNNNATC 1 cut(s) 483
BseMI GCAATG 2 cut(s) 369, 715
BseMII CTCAG 3 cut(s) 129, 452, 759
BseRI GAGGAG 3 cut(s) 128, 469, 769
BseXI GCAGC 4 cut(s) 4, 23, 26, 76
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 2 cut(s) 30, 43
Bsh1236I CGCG 2 cut(s) 32, 316
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 98, 365, 564
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 3 cut(s) 216, 251, 818
BsmFI GGGAC 3 cut(s) 216, 251, 818
BsnI GGCC 3 cut(s) 98, 365, 564
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 4 cut(s) 198, 252, 286, 484
BspACI CCGC 7 cut(s) 47, 50, 99, 205, 360, 428, 924
BspANI GGCC 3 cut(s) 98, 365, 564
BspCNI CTCAG 3 cut(s) 128, 451, 758
BspFNI CGCG 2 cut(s) 32, 316
BspLI GGNNCC 7 cut(s) 231, 232, 266, 267, 364, 500, 706
BspMAI CTGCAG 1 cut(s) 967
BspPI GGATC 2 cut(s) 294, 492
BspT104I TTCGAA 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 369, 715
BsrFI RCCGGY 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 235, 261
BssMI GATC 4 cut(s) 198, 252, 286, 484
BssNAI GTATAC 1 cut(s) 826
BssNI GRCGYC 2 cut(s) 339, 558
Bst1107I GTATAC 1 cut(s) 826
Bst2UI CCWGG 4 cut(s) 237, 248, 262, 722
Bst4CI ACNGT 4 cut(s) 80, 157, 404, 410
Bst6I CTCTTC 2 cut(s) 146, 262
BstACI GRCGYC 2 cut(s) 339, 558
BstAFI CTTAAG 1 cut(s) 802
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 22, 634
BstDEI CTNAG 4 cut(s) 115, 438, 745, 872
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 2 cut(s) 32, 316
BstH2I RGCGCY 1 cut(s) 942
BstHHI GCGC 3 cut(s) 32, 318, 941
BstKTI GATC 4 cut(s) 201, 255, 289, 487
BstMBI GATC 4 cut(s) 198, 252, 286, 484
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 7 cut(s) 17, 89, 95, 98, 371, 434, 731
BstNI CCWGG 4 cut(s) 237, 248, 262, 722
BstSCI CCNGG 4 cut(s) 235, 246, 260, 720
BstSFI CTRYAG 2 cut(s) 160, 963
BstUI CGCG 2 cut(s) 32, 316
BstV1I GCAGC 4 cut(s) 4, 23, 26, 76
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 252, 484
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 2 cut(s) 252, 484
BstZ17I GTATAC 1 cut(s) 826
Bsu36I CCTNAGG 1 cut(s) 872
BsuRI GGCC 3 cut(s) 98, 365, 564
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 2 cut(s) 415, 983
Cac8I GCNNGC 2 cut(s) 22, 634
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 3 cut(s) 32, 318, 941
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 3 cut(s) 230, 265, 363
CseI GACGC 3 cut(s) 262, 322, 328
CviAII CATG 4 cut(s) 40, 121, 349, 952
DdeI CTNAG 4 cut(s) 115, 438, 745, 872
DpnI GATC 4 cut(s) 200, 254, 288, 486
DpnII GATC 4 cut(s) 198, 252, 286, 484
DraI TTTAAA 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 146, 262
EarI CTCTTC 2 cut(s) 146, 262
Eco24I GRGCYC 1 cut(s) 534
Eco47I GGWCC 2 cut(s) 230, 265
Eco47III AGCGCT 1 cut(s) 940
Eco81I CCTNAGG 1 cut(s) 872
EcoO109I RGGNCCY 2 cut(s) 230, 265
EcoRI GAATTC 1 cut(s) 968
EcoRII CCWGG 4 cut(s) 235, 246, 260, 720
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 4 cut(s) 43, 124, 352, 955
FaiI YATR 8 cut(s) 41, 122, 128, 350, 471, 684, 826, 953
FalI AAGNNNNNCTT 1 cut(s) 974
FaqI GGGAC 3 cut(s) 216, 251, 818
FatI CATG 4 cut(s) 39, 120, 348, 951
FauI CCCGC 1 cut(s) 353
FblI GTMKAC 2 cut(s) 159, 825
Fnu4HI GCNGC 6 cut(s) 12, 15, 18, 48, 90, 99
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 6 cut(s) 12, 15, 18, 48, 90, 99
FspBI CTAG 2 cut(s) 344, 942
GlaI GCGC 3 cut(s) 31, 317, 940
GluI GCNGC 6 cut(s) 12, 15, 18, 48, 90, 99
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 942
HaeIII GGCC 3 cut(s) 98, 365, 564
HapII CCGG 1 cut(s) 336
HgaI GACGC 3 cut(s) 262, 322, 328
HhaI GCGC 3 cut(s) 32, 318, 941
Hin1I GRCGYC 2 cut(s) 339, 558
Hin1II CATG 4 cut(s) 43, 124, 352, 955
Hin6I GCGC 3 cut(s) 30, 316, 939
HinP1I GCGC 3 cut(s) 30, 316, 939
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 3 cut(s) 608, 737, 831
HpaII CCGG 1 cut(s) 336
HphI GGTGA 5 cut(s) 163, 281, 325, 335, 416
Hpy166II GTNNAC 5 cut(s) 160, 730, 761, 826, 883
Hpy188I TCNGA 2 cut(s) 748, 767
Hpy188III TCNNGA 3 cut(s) 74, 284, 490
Hpy8I GTNNAC 5 cut(s) 160, 730, 761, 826, 883
Hpy99I CGWCG 5 cut(s) 278, 281, 316, 560, 563
HpyAV CCTTC 1 cut(s) 958
HpyCH4III ACNGT 4 cut(s) 80, 157, 404, 410
HpyCH4IV ACGT 2 cut(s) 330, 558
HpyCH4V TGCA 4 cut(s) 11, 24, 692, 965
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 89, 95, 98, 371, 434, 731
HpyF3I CTNAG 4 cut(s) 115, 438, 745, 872
HpySE526I ACGT 2 cut(s) 330, 558
Hsp92I GRCGYC 2 cut(s) 339, 558
Hsp92II CATG 4 cut(s) 43, 124, 352, 955
HspAI GCGC 3 cut(s) 30, 316, 939
KflI GGGWCCC 2 cut(s) 230, 265
Kzo9I GATC 4 cut(s) 198, 252, 286, 484
LmnI GCTCC 4 cut(s) 27, 357, 498, 704
Lsp1109I GCAGC 4 cut(s) 4, 23, 26, 76
LweI GCATC 1 cut(s) 940
MaeI CTAG 2 cut(s) 344, 942
MaeII ACGT 2 cut(s) 330, 558
MaeIII GTNAC 2 cut(s) 331, 404
MalI GATC 4 cut(s) 200, 254, 288, 486
MbiI CCGCTC 1 cut(s) 360
MboI GATC 4 cut(s) 198, 252, 286, 484
MboII GAAGA 6 cut(s) 133, 136, 143, 249, 902, 994
MflI RGATCY 2 cut(s) 252, 484
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 6 cut(s) 396, 615, 653, 687, 773, 968
MlyI GAGTC 2 cut(s) 617, 840
MmeI TCCRAC 1 cut(s) 607
MseI TTAA 5 cut(s) 542, 614, 656, 803, 861
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 802
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 4 cut(s) 237, 248, 262, 722
MvaI CCWGG 4 cut(s) 237, 248, 262, 722
MvnI CGCG 2 cut(s) 32, 316
MwoI GCNNNNNNNGC 7 cut(s) 17, 89, 95, 98, 371, 434, 731
NdeII GATC 4 cut(s) 198, 252, 286, 484
NlaIII CATG 4 cut(s) 43, 124, 352, 955
NlaIV GGNNCC 7 cut(s) 231, 232, 266, 267, 364, 500, 706
NmuCI GTSAC 2 cut(s) 331, 404
NspV TTCGAA 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 1 cut(s) 737
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 6 cut(s) 13, 16, 19, 49, 91, 100
PleI GAGTC 2 cut(s) 616, 839
PpsI GAGTC 2 cut(s) 616, 839
PpuMI RGGWCCY 2 cut(s) 230, 265
PshBI ATTAAT 1 cut(s) 656
Psp5II RGGWCCY 2 cut(s) 230, 265
Psp6I CCWGG 4 cut(s) 235, 246, 260, 720
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 4 cut(s) 235, 246, 260, 720
PspN4I GGNNCC 7 cut(s) 231, 232, 266, 267, 364, 500, 706
PspPI GGNCC 3 cut(s) 230, 265, 363
PspPPI RGGWCCY 2 cut(s) 230, 265
PstI CTGCAG 1 cut(s) 967
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 2 cut(s) 252, 484
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 5 cut(s) 542, 614, 656, 803, 861
SatI GCNGC 6 cut(s) 12, 15, 18, 48, 90, 99
Sau3AI GATC 4 cut(s) 198, 252, 286, 484
Sau96I GGNCC 3 cut(s) 230, 265, 363
SchI GAGTC 2 cut(s) 617, 840
ScrFI CCNGG 4 cut(s) 237, 248, 262, 722
SduI GDGCHC 1 cut(s) 534
SfaNI GCATC 1 cut(s) 940
SfcI CTRYAG 2 cut(s) 160, 963
SfuI TTCGAA 1 cut(s) 465
SgrAI CRCCGGYG 1 cut(s) 335
SinI GGWCC 2 cut(s) 230, 265
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 802
SmoI CTYRAG 1 cut(s) 802
Sse9I AATT 6 cut(s) 396, 615, 653, 687, 773, 968
SsiI CCGC 7 cut(s) 47, 50, 99, 205, 360, 428, 924
SspMI CTAG 2 cut(s) 344, 942
StyD4I CCNGG 4 cut(s) 235, 246, 260, 720
TaaI ACNGT 4 cut(s) 80, 157, 404, 410
TaiI ACGT 2 cut(s) 333, 561
TaqI TCGA 4 cut(s) 201, 306, 465, 972
TasI AATT 6 cut(s) 396, 615, 653, 687, 773, 968
TauI GCSGC 2 cut(s) 50, 101
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 5 cut(s) 542, 614, 656, 803, 861
Tru9I TTAA 5 cut(s) 542, 614, 656, 803, 861
TscAI CASTG 2 cut(s) 415, 983
TseFI GTSAC 2 cut(s) 331, 404
TseI GCWGC 4 cut(s) 11, 14, 17, 89
Tsp45I GTSAC 2 cut(s) 331, 404
TspDTI ATGAA 5 cut(s) 56, 365, 678, 699, 940
TspRI CASTG 2 cut(s) 415, 983
Vha464I CTTAAG 1 cut(s) 802
VpaK11BI GGWCC 2 cut(s) 230, 265
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 1 cut(s) 968
XmiI GTMKAC 2 cut(s) 159, 825
XspI CTAG 2 cut(s) 344, 942
ZraI GACGTC 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.