RchiOBHm_Chr7g0177491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015979
Physical Location & Seq
Reverse (-)
433418 .. 436140
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15810

Sequence Viewer

Length: 966 bp
ATGAGAAAACCGGCGGTGCTGTACCACTATCCTTGCCCGGACGGCGCGTTTGCTGCTCTGGCGGCGCACCTCTATTTCTCAGCCAAGTCCGTCGAACCCTTGTTCTTCCCTAACGCCGTCTACAGCCCCGTCACGACCCAAAGCCTCCCTCTTTCTGACATCGGCGACCTCTACCTCCTCGACTTCGTGGGCCCACCTGGGTTTGTCCAGGAGGTCTCTGCCGAGGTCCCCAACGTCGTCGTTTTGGACCACCACAAGACCGCGATCGGAAGAGTGAGCGGTGAGAACGTGACCAGCGTTCTGGACATGAACAGGAGCGGGGCCACCATTGCTTTCGACTATTTCAGGGGCAAGATTGACGGCGGCGACACGGCGAGGTTTGACGGCGTTAGGAGGCTGTTTGAGTATATTGAGGATGGGGATTTGTGGCGGTGGGGGCTTCCTGATAGTAAAGCTTTCAGTAGCGGATTCAAAGATTTGAACTTGCAGTACGACGTCGGATTGAACCCGGCTCTGTTCCAACAGCTGCTTTCTTTGGACTTGGAGTGTTTGATTAGTCGAGGAGTGGCGAGCTTATCAGAAAAGCAGAAATTGATAGACGAAGCTCTGAGTCAGGCTTATGAAATCAAACTTGGAGGTGGAGCTTTTGGTCATTGCCTGGCTGTCAATGCAGATTCTATATCAGAGTTGAGGAGTGAACTCGGACATCAGTTGGCTACTAAAAGCCGCAGCCTAAACTTAAGGGGTATTGGAGCTGTTGTATACATAGTCCCTGAGCTCGAAAATGACGAATTGCTAAAGATAAGCCTTAGGAGTGTGGACAGTGAAGACACAACTCTCATCTCACAGGAATTTGGAGGCGGTGGACATAGAAACGCCAGTTCTTTTATGTTAGGATCCGCAGAATTCGAGCGGTGGAAGGTTGGCCGAGCAATCATTGCTGGCTCTGGAAAATGTACAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

34.83

Weight (kDa)

5.13

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53345
fragaria_vesca FvH4_5g18120
malus_domestica MD06G1236700.v1.1
prunus_persica Prupe.5G241200_v2.0.a1 Prupe.5G241200_v2.0.a1
pyrus_communis pycom06g21240 pycom14g20480
rosa_chinensis RchiOBHm_Chr7g0177491
rosa_laevigata RLG00000005533
rosa_multiflora Rmu_sc0028619.1_g000002
rosa_roxburghii Rroxscaffold_3G00275830
rosa_rugosa Rorug06G0406500
rosa_samantha Rh7CG006300 Rh7DG005800
rosa_wichuraiana Rw7G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccBSI CCGCTC 3 cut(s) 279, 318, 913
AccI GTMKAC 2 cut(s) 120, 762
AccII CGCG 2 cut(s) 47, 263
AclWI GGATC 2 cut(s) 891, 904
AcoI YGGCCR 1 cut(s) 925
AcsI RAATTY 2 cut(s) 851, 905
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 3 cut(s) 23, 491, 958
AflII CTTAAG 1 cut(s) 739
AgsI TTSAA 3 cut(s) 472, 481, 505
AjnI CCWGG 3 cut(s) 196, 207, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AluBI AGCT 7 cut(s) 455, 526, 573, 605, 644, 755, 778
AluI AGCT 7 cut(s) 455, 526, 573, 605, 644, 755, 778
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 2 cut(s) 891, 904
AoxI GGCC 3 cut(s) 190, 321, 925
ApaI GGGCCC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 53, 526, 729
ApoI RAATTY 2 cut(s) 851, 905
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspLEI GCGC 2 cut(s) 47, 67
AspS9I GGNCC 5 cut(s) 190, 191, 226, 247, 321
AsuC2I CCSGG 2 cut(s) 38, 509
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 2 cut(s) 226, 247
AxyI CCTNAGG 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 896
BanII GRGCYC 2 cut(s) 194, 780
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 3 cut(s) 40, 513, 741
BccI CCATC 1 cut(s) 410
BceAI ACGGC 5 cut(s) 58, 101, 376, 387, 400
BciT130I CCWGG 3 cut(s) 198, 209, 659
BcnI CCSGG 2 cut(s) 38, 509
BcoDI GTCTC 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 121
BfrI CTTAAG 1 cut(s) 739
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 6 cut(s) 54, 63, 364, 527, 727, 730
BlsI GCNGC 6 cut(s) 55, 64, 365, 528, 728, 731
Bme1390I CCNGG 5 cut(s) 38, 198, 209, 509, 659
Bme18I GGWCC 2 cut(s) 226, 247
BmgT120I GGNCC 5 cut(s) 190, 191, 226, 247, 321
BmiI GGNNCC 4 cut(s) 192, 228, 322, 898
BmrFI CCNGG 5 cut(s) 38, 198, 209, 509, 659
BpiI GAAGAC 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 774
BpuMI CCSGG 2 cut(s) 38, 509
BsaHI GRCGYC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 197, 222
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 879
Bse21I CCTNAGG 1 cut(s) 809
Bse3DI GCAATG 3 cut(s) 327, 652, 936
BseBI CCWGG 3 cut(s) 198, 209, 659
BseDI CCNNGG 2 cut(s) 197, 222
BseGI GGATG 1 cut(s) 421
BseMI GCAATG 3 cut(s) 327, 652, 936
BseMII CTCAG 3 cut(s) 93, 599, 765
BseNI ACTGG 1 cut(s) 879
BseRI GAGGAG 3 cut(s) 167, 576, 706
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 3 cut(s) 40, 513, 741
Bsh1236I CGCG 2 cut(s) 47, 263
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 3 cut(s) 192, 323, 927
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 780
BsiSI CCGG 3 cut(s) 11, 38, 509
BslFI GGGAC 2 cut(s) 212, 755
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 2 cut(s) 212, 755
BsnI GGCC 3 cut(s) 192, 323, 927
Bso31I GGTCTC 1 cut(s) 220
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 194, 780
Bsp1407I TGTACA 1 cut(s) 956
Bsp143I GATC 2 cut(s) 264, 896
BspANI GGCC 3 cut(s) 192, 323, 927
BspCNI CTCAG 3 cut(s) 92, 600, 766
BspFNI CGCG 2 cut(s) 47, 263
BspLI GGNNCC 4 cut(s) 192, 228, 322, 898
BspPI GGATC 2 cut(s) 891, 904
BspTI CTTAAG 1 cut(s) 739
BspTNI GGTCTC 1 cut(s) 220
BsrBI CCGCTC 3 cut(s) 279, 318, 913
BsrDI GCAATG 3 cut(s) 327, 652, 936
BsrFI RCCGGY 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 956
BsrI ACTGG 1 cut(s) 879
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 197, 222
BssMI GATC 2 cut(s) 264, 896
BssNAI GTATAC 1 cut(s) 763
BssNI GRCGYC 1 cut(s) 495
Bst1107I GTATAC 1 cut(s) 763
Bst2UI CCWGG 3 cut(s) 198, 209, 659
Bst4CI ACNGT 1 cut(s) 824
Bst6I CTCTTC 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 495
BstAFI CTTAAG 1 cut(s) 739
BstAPI GCANNNNNTGC 1 cut(s) 938
BstAUI TGTACA 1 cut(s) 956
BstC8I GCNNGC 2 cut(s) 571, 943
BstDEI CTNAG 4 cut(s) 79, 608, 774, 809
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 2 cut(s) 47, 263
BstHHI GCGC 2 cut(s) 47, 67
BstKTI GATC 2 cut(s) 267, 899
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 2 cut(s) 264, 896
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 8 cut(s) 42, 53, 59, 62, 329, 436, 668, 938
BstNI CCWGG 3 cut(s) 198, 209, 659
BstSCI CCNGG 5 cut(s) 36, 196, 207, 507, 657
BstSFI CTRYAG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 194
BstUI CGCG 2 cut(s) 47, 263
BstV1I GCAGC 3 cut(s) 40, 513, 741
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 1 cut(s) 896
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 896
BstZ17I GTATAC 1 cut(s) 763
Bsu36I CCTNAGG 1 cut(s) 809
BsuRI GGCC 3 cut(s) 192, 323, 927
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 829
Cac8I GCNNGC 2 cut(s) 571, 943
CfoI GCGC 2 cut(s) 47, 67
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 5 cut(s) 190, 191, 226, 247, 321
Csp6I GTAC 3 cut(s) 22, 490, 957
CspCI CAANNNNNGTGG 2 cut(s) 14, 49
CviAII CATG 1 cut(s) 307
CviQI GTAC 3 cut(s) 22, 490, 957
DdeI CTNAG 4 cut(s) 79, 608, 774, 809
DpnI GATC 2 cut(s) 266, 898
DpnII GATC 2 cut(s) 264, 896
EaeI YGGCCR 1 cut(s) 925
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 778
Eco24I GRGCYC 2 cut(s) 194, 780
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 226, 247
Eco53kI GAGCTC 1 cut(s) 778
Eco81I CCTNAGG 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 778
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 3 cut(s) 196, 207, 657
EcoT38I GRGCYC 2 cut(s) 194, 780
FaeI CATG 1 cut(s) 310
FaiI YATR 8 cut(s) 308, 408, 621, 680, 763, 767, 870, 890
FaqI GGGAC 2 cut(s) 212, 755
FatI CATG 1 cut(s) 306
FauI CCCGC 1 cut(s) 311
FblI GTMKAC 2 cut(s) 120, 762
Fnu4HI GCNGC 6 cut(s) 54, 63, 364, 527, 727, 730
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 2 cut(s) 194, 780
Fsp4HI GCNGC 6 cut(s) 54, 63, 364, 527, 727, 730
GlaI GCGC 2 cut(s) 46, 66
GluI GCNGC 6 cut(s) 54, 63, 364, 527, 727, 730
HaeIII GGCC 3 cut(s) 192, 323, 927
HapII CCGG 3 cut(s) 11, 38, 509
HhaI GCGC 2 cut(s) 47, 67
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 2 cut(s) 45, 65
HinP1I GCGC 2 cut(s) 45, 65
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 3 cut(s) 468, 610, 674
HpaII CCGG 3 cut(s) 11, 38, 509
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 5 cut(s) 121, 698, 763, 820, 866
Hpy188I TCNGA 7 cut(s) 157, 269, 500, 580, 609, 685, 704
Hpy188III TCNNGA 4 cut(s) 133, 302, 443, 948
Hpy8I GTNNAC 5 cut(s) 121, 698, 763, 820, 866
Hpy99I CGWCG 5 cut(s) 95, 239, 242, 497, 500
HpyAV CCTTC 1 cut(s) 913
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4IV ACGT 3 cut(s) 234, 288, 495
HpyCH4V TGCA 2 cut(s) 487, 671
HpyF10VI GCNNNNNNNGC 8 cut(s) 42, 53, 59, 62, 329, 436, 668, 938
HpyF3I CTNAG 4 cut(s) 79, 608, 774, 809
HpySE526I ACGT 3 cut(s) 234, 288, 495
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 2 cut(s) 45, 65
Kzo9I GATC 2 cut(s) 264, 896
LmnI GCTCC 3 cut(s) 315, 641, 752
Lsp1109I GCAGC 3 cut(s) 40, 513, 741
MaeII ACGT 3 cut(s) 234, 288, 495
MaeIII GTNAC 2 cut(s) 130, 289
MalI GATC 2 cut(s) 266, 898
MbiI CCGCTC 3 cut(s) 279, 318, 913
MboI GATC 2 cut(s) 264, 896
MboII GAAGA 3 cut(s) 97, 282, 839
MflI RGATCY 1 cut(s) 896
MhlI GDGCHC 2 cut(s) 194, 780
MluCI AATT 4 cut(s) 590, 791, 851, 905
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 2 cut(s) 478, 544
MseI TTAA 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 526
MspCI CTTAAG 1 cut(s) 739
MspI CCGG 3 cut(s) 11, 38, 509
MspR9I CCNGG 5 cut(s) 38, 198, 209, 509, 659
MvaI CCWGG 3 cut(s) 198, 209, 659
MvnI CGCG 2 cut(s) 47, 263
MwoI GCNNNNNNNGC 8 cut(s) 42, 53, 59, 62, 329, 436, 668, 938
NciI CCSGG 2 cut(s) 38, 509
NdeII GATC 2 cut(s) 264, 896
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 4 cut(s) 192, 228, 322, 898
NmeAIII GCCGAG 2 cut(s) 247, 953
NmuCI GTSAC 2 cut(s) 130, 289
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 786
PfeI GAWTC 2 cut(s) 468, 674
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 6 cut(s) 55, 64, 365, 528, 728, 731
Ple19I CGATCG 1 cut(s) 267
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 780
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 3 cut(s) 196, 207, 657
PspGI CCWGG 3 cut(s) 196, 207, 657
PspN4I GGNNCC 4 cut(s) 192, 228, 322, 898
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 5 cut(s) 190, 191, 226, 247, 321
PspPPI RGGWCCY 1 cut(s) 226
PsrI GAACNNNNNNTAC 2 cut(s) 473, 505
PsuI RGATCY 1 cut(s) 896
PvuI CGATCG 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 3 cut(s) 23, 491, 958
RsaNI GTAC 3 cut(s) 22, 490, 957
SacI GAGCTC 1 cut(s) 780
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 6 cut(s) 54, 63, 364, 527, 727, 730
Sau3AI GATC 2 cut(s) 264, 896
Sau96I GGNCC 5 cut(s) 190, 191, 226, 247, 321
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 5 cut(s) 38, 198, 209, 509, 659
SduI GDGCHC 2 cut(s) 194, 780
SfcI CTRYAG 1 cut(s) 121
SinI GGWCC 2 cut(s) 226, 247
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
Sse9I AATT 4 cut(s) 590, 791, 851, 905
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 5 cut(s) 36, 196, 207, 507, 657
TaaI ACNGT 1 cut(s) 824
TaiI ACGT 3 cut(s) 237, 291, 498
TaqI TCGA 6 cut(s) 93, 180, 336, 559, 780, 909
TasI AATT 4 cut(s) 590, 791, 851, 905
TatI WGTACW 1 cut(s) 956
TauI GCSGC 3 cut(s) 65, 366, 729
TfiI GAWTC 2 cut(s) 468, 674
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 2 cut(s) 130, 289
TseI GCWGC 3 cut(s) 53, 526, 729
Tsp45I GTSAC 2 cut(s) 130, 289
TspDTI ATGAA 2 cut(s) 323, 636
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 829
Vha464I CTTAAG 1 cut(s) 739
VpaK11BI GGWCC 2 cut(s) 226, 247
XapI RAATTY 2 cut(s) 851, 905
XmiI GTMKAC 2 cut(s) 120, 762
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.