pycom06g21240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015979
Physical Location & Seq
Forward (+)
23927654 .. 23929912
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g21240.1

Sequence Viewer

Length: 951 bp
ATGAATATGGTAATTAACACGAGACCGGCAGTGTTGTACCATTACCCTTGCCCGGACGGCGCGTTTGCTGCTTTGGCGGCGCACCTCTACTTCTCCGCCATCTCTGTCGAGCCCCTCTTCTTCCCCAACACCGTTTACAGCCCCATCACCCCCCAACACCTCCCTCTCGCCGATATCGACCACCTTTACCTCCTCGACTTCGTGGGCCCCCCTGGTTTCGTCCAGAAGATCTCCTCCGCGGTCCCGAACGTCGTGGTCTTGGACCATCACAAGACTGCCATTGGAACCCCCATAGGCGGAAACGTGGCCGGCGTCGTAGACATGAACAGGAGCGGCGCCACCATCGCTTTCGATTACTTCAGGGACAAAATTGACGCCGACAACAAGGCGGCGGTTGCTCGGTTTGACGCGGTGAGGAGGCTGTTCGAGTATATCGAGGATGGGGATCTATGGAGGTGGATGCTTCCAAATAGTAAAGCTTTCAGTAGTGGTTTCAAAGATTTGAACCTTGAATACGACGTCGGGTTGAACCCATCTTTGTTCCAACAGCTGCTTTCTTTGGATTTGGAGTCTGTGATTAGTGAAGGAATGGCGAGCTTATCGGAAAAGCAGAAATTAATAGACGAAGCTCTCCGTTCGTCTTATGAAATTGCACTTTGCTGTGGAGCCTTTGGACATTGCCTGGCTGTCACTGCAGATTCTATCTCCGAGTTGAGGAGTGAACTCGGACATCAATTAGCTACTAAAAGCCGTAGTCTAAGCTTAAGGGGCATTGGTGCTGTTGTATACAGAGTGCCTGAGCTTGAAAATGACCAAATGCTAAAAATAAGCCTTAGGAGTGTGGACACCGAAGACACAACACTCATCTCACAGGAATTTGGAGGCGGTGGGCATCGAAATGCTAGTTCCTTCATGTTAGGCTCTGCAGAATTCAAGCAGTGGAAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

34.71

Weight (kDa)

5.25

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53345
fragaria_vesca FvH4_5g18120
malus_domestica MD06G1236700.v1.1
prunus_persica Prupe.5G241200_v2.0.a1 Prupe.5G241200_v2.0.a1
pyrus_communis pycom06g21240 pycom14g20480
rosa_chinensis RchiOBHm_Chr7g0177491
rosa_laevigata RLG00000005533
rosa_multiflora Rmu_sc0028619.1_g000002
rosa_roxburghii Rroxscaffold_3G00275830
rosa_rugosa Rorug06G0406500
rosa_samantha Rh7CG006300 Rh7DG005800
rosa_wichuraiana Rw7G000490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 335
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 2 cut(s) 318, 786
AccII CGCG 3 cut(s) 62, 239, 410
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 875, 929
AcuI CTGAAG 1 cut(s) 343
AcyI GRCGYC 4 cut(s) 312, 336, 375, 519
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 3 cut(s) 52, 296, 714
AflII CTTAAG 1 cut(s) 763
AgsI TTSAA 6 cut(s) 496, 505, 512, 529, 806, 934
AjnI CCWGG 2 cut(s) 211, 681
AluBI AGCT 7 cut(s) 479, 550, 597, 629, 740, 762, 802
AluI AGCT 7 cut(s) 479, 550, 597, 629, 740, 762, 802
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 453
AoxI GGCC 2 cut(s) 205, 306
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 68, 550
ApoI RAATTY 2 cut(s) 875, 929
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AseI ATTAAT 1 cut(s) 617
AspLEI GCGC 3 cut(s) 62, 82, 338
AspS9I GGNCC 4 cut(s) 205, 206, 241, 262
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 139, 424
AvaII GGWCC 2 cut(s) 241, 262
AxyI CCTNAGG 1 cut(s) 833
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 114, 209
BauI CACGAG 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 858
BbvI GCAGC 2 cut(s) 55, 537
BccI CCATC 6 cut(s) 107, 152, 273, 350, 434, 541
BceAI ACGGC 2 cut(s) 73, 735
BciT130I CCWGG 2 cut(s) 213, 683
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 903
BfmI CTRYAG 2 cut(s) 693, 924
BfoI RGCGCY 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 57
BglII AGATCT 1 cut(s) 228
BisI GCNGC 5 cut(s) 69, 78, 334, 390, 551
BlsI GCNGC 5 cut(s) 70, 79, 335, 391, 552
Bme1390I CCNGG 3 cut(s) 53, 213, 683
Bme18I GGWCC 2 cut(s) 241, 262
BmgT120I GGNCC 4 cut(s) 205, 206, 241, 262
BmiI GGNNCC 6 cut(s) 207, 208, 243, 286, 337, 667
BmrFI CCNGG 3 cut(s) 53, 213, 683
BmsI GCATC 2 cut(s) 450, 901
BpiI GAAGAC 1 cut(s) 858
Bpu10I CCTNAGC 1 cut(s) 798
BpuMI CCSGG 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 444
BsaHI GRCGYC 4 cut(s) 312, 336, 375, 519
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 211, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 296, 714
Bse118I RCCGGY 2 cut(s) 25, 308
Bse21I CCTNAGG 1 cut(s) 833
Bse3DI GCAATG 1 cut(s) 676
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 2 cut(s) 213, 683
BseDI CCNNGG 2 cut(s) 211, 237
BseGI GGATG 2 cut(s) 445, 465
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 3 cut(s) 52, 296, 714
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 1 cut(s) 789
BseRI GAGGAG 4 cut(s) 182, 223, 430, 730
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 55, 537
Bsh1236I CGCG 3 cut(s) 62, 239, 410
BshFI GGCC 2 cut(s) 207, 308
BshNI GGYRCC 1 cut(s) 335
BsiSI CCGG 3 cut(s) 26, 53, 309
BslFI GGGAC 2 cut(s) 227, 377
BslI CCNNNNNNNGG 3 cut(s) 52, 296, 714
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 227, 377
BsnI GGCC 2 cut(s) 207, 308
Bso31I GGTCTC 1 cut(s) 16
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 114, 209
Bsp143I GATC 2 cut(s) 228, 445
BspANI GGCC 2 cut(s) 207, 308
BspCNI CTCAG 1 cut(s) 790
BspFNI CGCG 3 cut(s) 62, 239, 410
BspLI GGNNCC 6 cut(s) 207, 208, 243, 286, 337, 667
BspMAI CTGCAG 2 cut(s) 697, 928
BspPI GGATC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 763
BspTNI GGTCTC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 676
BsrFI RCCGGY 2 cut(s) 25, 308
BssAI RCCGGY 2 cut(s) 25, 308
BssECI CCNNGG 2 cut(s) 211, 237
BssMI GATC 2 cut(s) 228, 445
BssNAI GTATAC 1 cut(s) 787
BssNI GRCGYC 4 cut(s) 312, 336, 375, 519
BssSI CACGAG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 787
Bst2BI CACGAG 1 cut(s) 19
Bst2UI CCWGG 2 cut(s) 213, 683
Bst4CI ACNGT 2 cut(s) 133, 948
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 4 cut(s) 312, 336, 375, 519
BstAFI CTTAAG 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 310, 595
BstDEI CTNAG 3 cut(s) 758, 798, 833
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 445, 465
BstFNI CGCG 3 cut(s) 62, 239, 410
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 3 cut(s) 62, 82, 338
BstKTI GATC 2 cut(s) 231, 448
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 2 cut(s) 228, 445
BstMWI GCNNNNNNNGC 8 cut(s) 57, 68, 74, 77, 344, 395, 692, 768
BstNI CCWGG 2 cut(s) 213, 683
BstSCI CCNGG 3 cut(s) 51, 211, 681
BstSFI CTRYAG 2 cut(s) 693, 924
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 3 cut(s) 62, 239, 410
BstV1I GCAGC 2 cut(s) 55, 537
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 2 cut(s) 228, 445
BstYI RGATCY 2 cut(s) 228, 445
BstZ17I GTATAC 1 cut(s) 787
Bsu36I CCTNAGG 1 cut(s) 833
BsuRI GGCC 2 cut(s) 207, 308
BtgI CCRYGG 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 445, 465
BtsI GCAGTG 3 cut(s) 36, 690, 944
BtsIMutI CAGTG 3 cut(s) 36, 690, 944
Cac8I GCNNGC 2 cut(s) 310, 595
CfoI GCGC 3 cut(s) 62, 82, 338
Cfr10I RCCGGY 2 cut(s) 25, 308
Cfr13I GGNCC 4 cut(s) 205, 206, 241, 262
Cfr42I CCGCGG 1 cut(s) 240
CseI GACGC 3 cut(s) 301, 383, 416
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 322, 913
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 758, 798, 833
DinI GGCGCC 1 cut(s) 337
DpnI GATC 2 cut(s) 230, 447
DpnII GATC 2 cut(s) 228, 445
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 2 cut(s) 85, 312
Eco24I GRGCYC 2 cut(s) 114, 209
Eco31I GGTCTC 1 cut(s) 16
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 241, 262
Eco57I CTGAAG 1 cut(s) 343
Eco81I CCTNAGG 1 cut(s) 833
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 2 cut(s) 211, 681
EcoRV GATATC 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 114, 209
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
FaeI CATG 2 cut(s) 325, 916
FaiI YATR 8 cut(s) 8, 293, 323, 432, 451, 645, 787, 914
FaqI GGGAC 2 cut(s) 227, 377
FatI CATG 2 cut(s) 321, 912
FblI GTMKAC 2 cut(s) 318, 786
Fnu4HI GCNGC 5 cut(s) 69, 78, 334, 390, 551
FokI GGATG 2 cut(s) 452, 472
FriOI GRGCYC 2 cut(s) 114, 209
Fsp4HI GCNGC 5 cut(s) 69, 78, 334, 390, 551
FspBI CTAG 1 cut(s) 903
GlaI GCGC 3 cut(s) 61, 81, 337
GluI GCNGC 5 cut(s) 69, 78, 334, 390, 551
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 2 cut(s) 207, 308
HapII CCGG 3 cut(s) 26, 53, 309
HgaI GACGC 3 cut(s) 301, 383, 416
HhaI GCGC 3 cut(s) 62, 82, 338
Hin1I GRCGYC 4 cut(s) 312, 336, 375, 519
Hin1II CATG 2 cut(s) 325, 916
Hin6I GCGC 3 cut(s) 60, 80, 336
HinP1I GCGC 3 cut(s) 60, 80, 336
HindIII AAGCTT 2 cut(s) 477, 760
HinfI GANTC 2 cut(s) 569, 698
HpaII CCGG 3 cut(s) 26, 53, 309
HphI GGTGA 2 cut(s) 139, 424
Hpy166II GTNNAC 5 cut(s) 136, 319, 722, 787, 844
Hpy188I TCNGA 3 cut(s) 604, 709, 728
Hpy188III TCNNGA 2 cut(s) 223, 244
Hpy8I GTNNAC 5 cut(s) 136, 319, 722, 787, 844
Hpy99I CGWCG 4 cut(s) 254, 317, 521, 524
HpyAV CCTTC 2 cut(s) 578, 919
HpyCH4III ACNGT 2 cut(s) 133, 948
HpyCH4IV ACGT 3 cut(s) 249, 303, 519
HpyCH4V TGCA 3 cut(s) 653, 695, 926
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 68, 74, 77, 344, 395, 692, 768
HpyF3I CTNAG 3 cut(s) 758, 798, 833
HpySE526I ACGT 3 cut(s) 249, 303, 519
Hsp92I GRCGYC 4 cut(s) 312, 336, 375, 519
Hsp92II CATG 2 cut(s) 325, 916
HspAI GCGC 3 cut(s) 60, 80, 336
KasI GGCGCC 1 cut(s) 335
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 2 cut(s) 228, 445
LmnI GCTCC 2 cut(s) 330, 665
Lsp1109I GCAGC 2 cut(s) 55, 537
LweI GCATC 2 cut(s) 450, 901
MaeI CTAG 1 cut(s) 903
MaeII ACGT 3 cut(s) 249, 303, 519
MaeIII GTNAC 1 cut(s) 688
MalI GATC 2 cut(s) 230, 447
MbiI CCGCTC 1 cut(s) 333
MboI GATC 2 cut(s) 228, 445
MboII GAAGA 4 cut(s) 109, 112, 238, 863
MflI RGATCY 2 cut(s) 228, 445
MhlI GDGCHC 2 cut(s) 114, 209
MluCI AATT 7 cut(s) 12, 369, 614, 648, 734, 875, 929
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 568
MroNI GCCGGC 1 cut(s) 308
MseI TTAA 3 cut(s) 15, 617, 764
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 2 cut(s) 239, 550
MspCI CTTAAG 1 cut(s) 763
MspI CCGG 3 cut(s) 26, 53, 309
MspR9I CCNGG 3 cut(s) 53, 213, 683
MvaI CCWGG 2 cut(s) 213, 683
MvnI CGCG 3 cut(s) 62, 239, 410
MwoI GCNNNNNNNGC 8 cut(s) 57, 68, 74, 77, 344, 395, 692, 768
NaeI GCCGGC 1 cut(s) 310
NarI GGCGCC 1 cut(s) 336
NciI CCSGG 1 cut(s) 53
NdeII GATC 2 cut(s) 228, 445
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 2 cut(s) 325, 916
NlaIV GGNNCC 6 cut(s) 207, 208, 243, 286, 337, 667
NmuCI GTSAC 1 cut(s) 688
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 309, 432
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 698
PkrI GCNGC 5 cut(s) 70, 79, 335, 391, 552
PleI GAGTC 1 cut(s) 577
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 577
PshBI ATTAAT 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 211, 681
PspGI CCWGG 2 cut(s) 211, 681
PspN4I GGNNCC 6 cut(s) 207, 208, 243, 286, 337, 667
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 4 cut(s) 205, 206, 241, 262
PsrI GAACNNNNNNTAC 2 cut(s) 497, 529
PstI CTGCAG 2 cut(s) 697, 928
PsuI RGATCY 2 cut(s) 228, 445
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 897
SacII CCGCGG 1 cut(s) 240
SaqAI TTAA 3 cut(s) 15, 617, 764
SatI GCNGC 5 cut(s) 69, 78, 334, 390, 551
Sau3AI GATC 2 cut(s) 228, 445
Sau96I GGNCC 4 cut(s) 205, 206, 241, 262
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 3 cut(s) 53, 213, 683
SduI GDGCHC 2 cut(s) 114, 209
SfaNI GCATC 2 cut(s) 450, 901
SfcI CTRYAG 2 cut(s) 693, 924
SfoI GGCGCC 1 cut(s) 337
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SinI GGWCC 2 cut(s) 241, 262
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
Sse9I AATT 7 cut(s) 12, 369, 614, 648, 734, 875, 929
SspDI GGCGCC 1 cut(s) 335
SspMI CTAG 1 cut(s) 903
StyD4I CCNGG 3 cut(s) 51, 211, 681
TaaI ACNGT 2 cut(s) 133, 948
TaiI ACGT 3 cut(s) 252, 306, 522
TaqI TCGA 7 cut(s) 108, 177, 195, 351, 426, 435, 895
TasI AATT 7 cut(s) 12, 369, 614, 648, 734, 875, 929
TauI GCSGC 3 cut(s) 80, 336, 392
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 3 cut(s) 15, 617, 764
Tru9I TTAA 3 cut(s) 15, 617, 764
TscAI CASTG 3 cut(s) 36, 697, 944
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 2 cut(s) 68, 550
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 4 cut(s) 17, 338, 660, 901
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 3 cut(s) 36, 697, 944
Vha464I CTTAAG 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 241, 262
VspI ATTAAT 1 cut(s) 617
XapI RAATTY 2 cut(s) 875, 929
XmiI GTMKAC 2 cut(s) 318, 786
XspI CTAG 1 cut(s) 903
ZraI GACGTC 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.