Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013036

Physical Location & Seq

Genomic Coordinates Forward (+)

20036631 .. 20038261

Gene Structure 1631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTTCTTCTACTAGATTAACTATTATACAATCAAGCTTCGTCTCCGCAAGAACAAGACTCAATTACGTCTCCAAGACAAATCATTCTGGGTTCGCTTGTCGTTCTCTTTCAAAACCCAGAAACTTGAGTCTCTCTGTTTATTCTATGGGTTCTTCTAGTTCTTCTCCGAAACCAGACAACGTCCAAGAGGCTGAGAAGAATGAGTTTGCTTCTCTAAGTGAAAATGAATGGAAGAAACGGCTAACACCAGAACAGTACTACATCACTAGACAGAAGGGCACAGAGAGAGCTTTCACTGGGGAGTATTGGAACTCAAAGACCCCTGGAGTATATAATTGTGTATGTTGCGACACACCTCTATTTGATTCATCAACAAAGTTTGATAGTGGAACAGGGTGGCCATCTTACTACCAACCAATTGGAAACAATGTGAAGACAAAGCTAGACCTCTCTATCATCTTCATGCCTAGACAAGAAGTTGTCTGTGCTGTTTGTAACGCCCATCTTGGTCATGTCTTTGACGACGGTCCACGCCCAACCGGAAAACGATATTGCCTCAACAGTGCTGCTCTGAAACTTAACGCATTGGAGAAAACAAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

202

Amino Acids

22.61

Weight (kDa)

9.15

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	82 - 188	4.4e-40	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53670 AT1G53670
fragaria_vesca	FvH4_3g28950 FvH4_3g28950
malus_domestica	MD03G1251900.v1.1
prunus_persica	Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis	pycom03g19940
rosa_chinensis	RchiOBHm_Chr5g0051791
rosa_laevigata	RLG00000034855
rosa_multiflora	Rmu_sc0000068.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027330
rosa_rugosa	Rorug05G0276900
rosa_samantha	Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana	Rw5G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	401
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	39, 293, 445
AluI	AGCT	3 cut(s)	39, 293, 445
Alw26I	GTCTC	3 cut(s)	49, 76, 137
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	2 cut(s)	412, 513
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	49, 76, 137
BfaI	CTAG	5 cut(s)	15, 159, 270, 446, 471
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	309
BoxI	GACNNNNGTC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	556
BshFI	GGCC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	543
BsmAI	GTCTC	3 cut(s)	49, 76, 137
BsmBI	CGTCTC	2 cut(s)	49, 76
BsnI	GGCC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	284
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	258, 530, 566
BstDEI	CTNAG	2 cut(s)	195, 218
BstMAI	GTCTC	3 cut(s)	49, 76, 137
BstNI	CCWGG	1 cut(s)	327
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	443
BstXI	CCANNNNNNTGG	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	297, 571
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	2 cut(s)	466, 515
CviJI	RGCY	7 cut(s)	5, 39, 194, 244, 293, 403, 445
CviKI_1	RGCY	7 cut(s)	5, 39, 194, 244, 293, 403, 445
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	195, 218
EaeI	YGGCCR	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	325
Esp3I	CGTCTC	2 cut(s)	49, 76
FaeI	CATG	2 cut(s)	469, 518
FaiI	YATR	7 cut(s)	29, 149, 334, 336, 346, 467, 516
FatI	CATG	2 cut(s)	465, 514
Fnu4HI	GCNGC	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	5 cut(s)	15, 159, 270, 446, 471
GluI	GCNGC	1 cut(s)	570
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	1 cut(s)	543
Hin1II	CATG	2 cut(s)	469, 518
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	3 cut(s)	60, 130, 368
HpaII	CCGG	1 cut(s)	543
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	2 cut(s)	171, 576
Hpy8I	GTNNAC	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	258, 530, 566
HpyCH4IV	ACGT	2 cut(s)	69, 183
HpyF3I	CTNAG	2 cut(s)	195, 218
HpySE526I	ACGT	2 cut(s)	69, 183
Hsp92II	CATG	2 cut(s)	469, 518
LpnPI	CCDG	9 cut(s)	75, 133, 189, 264, 285, 312, 339, 381, 556
Lsp1109I	GCAGC	1 cut(s)	556
MaeI	CTAG	5 cut(s)	15, 159, 270, 446, 471
MaeII	ACGT	2 cut(s)	69, 183
MaeIII	GTNAC	1 cut(s)	497
MboII	GAAGA	6 cut(s)	147, 156, 211, 247, 448, 454
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	284
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	3 cut(s)	64, 337, 420
MluNI	TGGCCA	1 cut(s)	403
MlyI	GAGTC	2 cut(s)	54, 139
MnlI	CCTC	4 cut(s)	184, 369, 461, 569
Mox20I	TGGCCA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	2 cut(s)	20, 582
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	403
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	327
NlaIII	CATG	2 cut(s)	469, 518
PfeI	GAWTC	1 cut(s)	368
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	2 cut(s)	54, 138
PpsI	GAGTC	2 cut(s)	54, 138
PshAI	GACNNNNGTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	530
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	20, 582
SatI	GCNGC	1 cut(s)	570
Sau96I	GGNCC	1 cut(s)	530
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	2 cut(s)	54, 139
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	7 cut(s)	41, 72, 186, 295, 361, 447, 453
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	64, 337, 420
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	5 cut(s)	15, 159, 270, 446, 471
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	258, 530, 566
TaiI	ACGT	2 cut(s)	72, 186
TasI	AATT	3 cut(s)	64, 337, 420
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	20, 582
Tru9I	TTAA	2 cut(s)	20, 582
TscAI	CASTG	2 cut(s)	304, 571
TseI	GCWGC	1 cut(s)	569
TspDTI	ATGAA	3 cut(s)	243, 360, 454
TspRI	CASTG	2 cut(s)	304, 571
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	530
XspI	CTAG	5 cut(s)	15, 159, 270, 446, 471
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.