FvH4_3g28950

Peptide methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013036
Physical Location & Seq
Reverse (-)
22034694 .. 22038424
3731 bp
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UTR
Exon/CDS
Intron
FvH4_3g28950.t1

Sequence Viewer

Length: 576 bp
ATGGCATTTCGTGTTCATCATTTGAGTCTGAGCTTACCAACAACAACAACTAGTTGTGTTTCTTCAAAAACCCATTTCGGTTTTGCCTTGAAACCCAAGACTTTAACATTTGGTAAACCCAAGAGGCTCTTCTTCTCACTCCGTGCGATGGGTTCGTCTGCTTCTTCCCCAGACAGCAGCACTCAAGAGACTGGTGACTATAAATCTGTAAGTAATGATGAATGGAAAAAGAAGCTTACAAAGGAACAGTTTTACATTACTCGTCAAAAGGGAACAGAGAGGGCGTTCACCGGGGAATACTGGAATACCAAAACTCCCGGAACTTACCATTGCATATGTTGTGACACCCCTCTTTTCGATGGAACTGGTTGGCCATCTTATTACCAGCCGATTGGAAATAACGTTAAGTCCAAGTTAGATTTGTCCATTATCATCATGCCTCGCCAGGAAGTTCTTTGTGCTGTTTGTGATGCTCATCTTGGCCATGTCTTCGATGATGGGCCACCACCTACAGGAAAGCGCTACTGTATTAACAGCGCTTCCCTGAAATTAAAACCAAAGCAGGAGTCAGCTTGA

Protein Analysis

192

Amino Acids

21.3

Weight (kDa)

9.23

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 79 - 186 1.9e-40 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53670 AT1G53670
fragaria_vesca FvH4_3g28950 FvH4_3g28950
malus_domestica MD03G1251900.v1.1
prunus_persica Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis pycom03g19940
rosa_chinensis RchiOBHm_Chr5g0051791
rosa_laevigata RLG00000034855
rosa_multiflora Rmu_sc0000068.1_g000007
rosa_roxburghii Rroxscaffold_1G00027330
rosa_rugosa Rorug05G0276900
rosa_samantha Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana Rw5G032930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 402
AcoI YGGCCR 2 cut(s) 371, 481
AdeI CACNNNGTG 1 cut(s) 143
AfeI AGCGCT 2 cut(s) 521, 538
AfiI CCNNNNNNNGG 2 cut(s) 148, 512
AgsI TTSAA 2 cut(s) 66, 91
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 1 cut(s) 444
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 3 cut(s) 33, 235, 572
AluI AGCT 3 cut(s) 33, 235, 572
Alw26I GTCTC 1 cut(s) 182
Aor51HI AGCGCT 2 cut(s) 521, 538
AoxI GGCC 3 cut(s) 371, 481, 500
ApeKI GCWGC 1 cut(s) 177
ArsI GACNNNNNNTTYG 1 cut(s) 551
AspLEI GCGC 2 cut(s) 522, 539
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 2 cut(s) 292, 318
AsuHPI GGTGA 2 cut(s) 206, 280
BalI TGGCCA 2 cut(s) 373, 483
BbsI GAAGAC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 189
BccI CCATC 4 cut(s) 142, 353, 382, 491
BciT130I CCWGG 1 cut(s) 446
BcnI CCSGG 2 cut(s) 292, 318
BcoDI GTCTC 1 cut(s) 182
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 2 cut(s) 523, 540
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 3 cut(s) 292, 318, 446
BmgT120I GGNCC 1 cut(s) 500
BmrFI CCNGG 3 cut(s) 292, 318, 446
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 168
BpuMI CCSGG 2 cut(s) 292, 318
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 512
Bse1I ACTGG 3 cut(s) 196, 305, 370
Bse3DI GCAATG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 148, 512
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 3 cut(s) 196, 305, 370
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 3 cut(s) 373, 483, 502
BsiSI CCGG 2 cut(s) 291, 318
BslI CCNNNNNNNGG 2 cut(s) 148, 512
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 3 cut(s) 373, 483, 502
BspANI GGCC 3 cut(s) 373, 483, 502
BspCNI CTCAG 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 3 cut(s) 196, 305, 370
BssECI CCNNGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 2 cut(s) 249, 527
Bst6I CTCTTC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 29
BstH2I RGCGCY 2 cut(s) 523, 540
BstHHI GCGC 2 cut(s) 522, 539
BstMAI GTCTC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 290, 316, 444
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 3 cut(s) 373, 483, 502
BtgZI GCGATG 1 cut(s) 161
CfoI GCGC 2 cut(s) 522, 539
Cfr13I GGNCC 1 cut(s) 500
CviAII CATG 2 cut(s) 436, 485
CviJI RGCY 8 cut(s) 33, 127, 235, 373, 388, 483, 502, 572
CviKI_1 RGCY 8 cut(s) 33, 127, 235, 373, 388, 483, 502, 572
DdeI CTNAG 1 cut(s) 29
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 371, 481
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco47III AGCGCT 2 cut(s) 521, 538
EcoRII CCWGG 1 cut(s) 444
FaeI CATG 2 cut(s) 439, 488
FaiI YATR 5 cut(s) 201, 335, 337, 437, 486
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 2 cut(s) 435, 484
FauNDI CATATG 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 51
GlaI GCGC 2 cut(s) 521, 538
GluI GCNGC 1 cut(s) 178
HaeII RGCGCY 2 cut(s) 523, 540
HaeIII GGCC 3 cut(s) 373, 483, 502
HapII CCGG 2 cut(s) 291, 318
HhaI GCGC 2 cut(s) 522, 539
Hin1II CATG 2 cut(s) 439, 488
Hin6I GCGC 2 cut(s) 520, 537
HinP1I GCGC 2 cut(s) 520, 537
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 2 cut(s) 25, 566
HpaII CCGG 2 cut(s) 291, 318
HphI GGTGA 2 cut(s) 206, 280
Hpy166II GTNNAC 2 cut(s) 116, 288
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 2 cut(s) 116, 288
HpyCH4III ACNGT 2 cut(s) 249, 527
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 2 cut(s) 439, 488
HspAI GCGC 2 cut(s) 520, 537
LguI GCTCTTC 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 194, 341
MboII GAAGA 5 cut(s) 54, 121, 124, 156, 481
MlsI TGGCCA 2 cut(s) 373, 483
MluCI AATT 1 cut(s) 548
MluNI TGGCCA 2 cut(s) 373, 483
MlyI GAGTC 2 cut(s) 34, 575
MnlI CCTC 4 cut(s) 117, 273, 360, 450
Mox20I TGGCCA 2 cut(s) 373, 483
MscI TGGCCA 2 cut(s) 373, 483
MseI TTAA 4 cut(s) 104, 405, 531, 551
Msp20I TGGCCA 2 cut(s) 373, 483
MspI CCGG 2 cut(s) 291, 318
MspR9I CCNGG 3 cut(s) 292, 318, 446
MvaI CCWGG 1 cut(s) 446
NciI CCSGG 2 cut(s) 292, 318
NdeI CATATG 1 cut(s) 335
NlaIII CATG 2 cut(s) 439, 488
NmuCI GTSAC 2 cut(s) 194, 341
PciSI GCTCTTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 2 cut(s) 33, 574
PpsI GAGTC 2 cut(s) 33, 574
Psp1406I AACGTT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspPI GGNCC 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 4 cut(s) 104, 405, 531, 551
SatI GCNGC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 2 cut(s) 34, 575
ScrFI CCNGG 3 cut(s) 292, 318, 446
SetI ASST 5 cut(s) 35, 237, 405, 511, 574
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 1 cut(s) 548
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 290, 316, 444
TaaI ACNGT 2 cut(s) 249, 527
TaiI ACGT 1 cut(s) 405
TaqI TCGA 2 cut(s) 357, 492
TasI AATT 1 cut(s) 548
Tru1I TTAA 4 cut(s) 104, 405, 531, 551
Tru9I TTAA 4 cut(s) 104, 405, 531, 551
TseFI GTSAC 2 cut(s) 194, 341
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 2 cut(s) 194, 341
TspDTI ATGAA 2 cut(s) 5, 234
TspGWI ACGGA 1 cut(s) 131
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.