Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0013036

Physical Location & Seq

Genomic Coordinates Forward (+)

33949708 .. 33952604

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1251900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGTCTTCTAGTTTTTGTTCGAGCTTACCCACAACAACTGCTCGCATTTCCTCCAAAACCCAGTTCGTATCTGGCTTGAAATCCAAGAAATTAATTTTGGGTTCCCGATCTTTGGTCAAACCCCAGAGGCTTTTCTCCTCTGTTCGTCGTATAATGGGTTTATCTGCTTCTTCCCCAGACAGAACTCAAGAGACAGGTGTTGGTGATTACAAATCTGTAAGTGATCAAGAATGGAAGGAGAAACTCACAGAGGAACAGTTTTACGTTACTCGTAAAAAGGGAACCGAGAGGGCTTTCACTGGGGAATACTGGAATACGAAAACTAAAGGAACATACCATTGCATATGTTGCGACACACCTCTTTTTGAATCATCTACCAAATTCAATAGCGGAACTGGTTGGCCATCGTATTACCAGCCCATAGGTGACAATGTGAAGTCCAAGTTAGACTTGTCTATATTTATGATGCCTCGAACTGAAGTTCTTTGTGCCGCTTGTGATGCTCATCTTGGCCATGTCTTCGATGATGGTCCACCACCAACAGGAAAGCGTTACTGTATCAACAGTGCCTCCCTGAAACTAAAGCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

199

Amino Acids

22.02

Weight (kDa)

9.23

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SelR	PF01641	83 - 197	1.3e-50	SelR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53670 AT1G53670
fragaria_vesca	FvH4_3g28950 FvH4_3g28950
malus_domestica	MD03G1251900.v1.1
prunus_persica	Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis	pycom03g19940
rosa_chinensis	RchiOBHm_Chr5g0051791
rosa_laevigata	RLG00000034855
rosa_multiflora	Rmu_sc0000068.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027330
rosa_rugosa	Rorug05G0276900
rosa_samantha	Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana	Rw5G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	393, 495
AcoI	YGGCCR	2 cut(s)	404, 514
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	115, 545
AgsI	TTSAA	3 cut(s)	82, 371, 388
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 83, 115
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	2 cut(s)	404, 514
ApoI	RAATTY	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	218, 440
AvaII	GGWCC	1 cut(s)	533
BalI	TGGCCA	2 cut(s)	406, 516
BbsI	GAAGAC	1 cut(s)	514
BccI	CCATC	2 cut(s)	415, 524
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	2 cut(s)	106, 286
BmrI	ACTGGG	2 cut(s)	58, 312
BmsI	GCATC	2 cut(s)	459, 493
BmuI	ACTGGG	2 cut(s)	58, 312
BpiI	GAAGAC	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 545
Bse1I	ACTGG	4 cut(s)	64, 307, 317, 403
Bse3DI	GCAATG	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	507
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	115, 545
BseMI	GCAATG	1 cut(s)	340
BseNI	ACTGG	4 cut(s)	64, 307, 317, 403
BseRI	GAGGAG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	406, 516
BslI	CCNNNNNNNGG	2 cut(s)	115, 545
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	406, 516
Bsp143I	GATC	2 cut(s)	110, 226
BspACI	CCGC	2 cut(s)	393, 495
BspANI	GGCC	2 cut(s)	406, 516
BspLI	GGNNCC	2 cut(s)	106, 286
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	4 cut(s)	64, 307, 317, 403
BssMI	GATC	2 cut(s)	110, 226
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	261, 560, 569
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	113, 229
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	110, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 503
BstV2I	GAAGAC	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	406, 516
BtsIMutI	CAGTG	2 cut(s)	300, 574
Cac8I	GCNNGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	533
CviAII	CATG	1 cut(s)	518
CviJI	RGCY	8 cut(s)	27, 78, 133, 296, 406, 421, 516, 589
CviKI_1	RGCY	8 cut(s)	27, 78, 133, 296, 406, 421, 516, 589
DpnI	GATC	2 cut(s)	112, 228
DpnII	GATC	2 cut(s)	110, 226
EaeI	YGGCCR	2 cut(s)	404, 514
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	501
FaeI	CATG	1 cut(s)	521
FaiI	YATR	8 cut(s)	155, 337, 347, 349, 425, 461, 467, 519
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	1 cut(s)	517
FauNDI	CATATG	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	495
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	406, 516
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	521
HinfI	GANTC	1 cut(s)	371
HphI	GGTGA	2 cut(s)	218, 440
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188III	TCNNGA	3 cut(s)	108, 191, 230
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	3 cut(s)	261, 560, 569
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 503
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	521
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	110, 226
LweI	GCATC	2 cut(s)	459, 493
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	268, 428, 554
MalI	GATC	2 cut(s)	112, 228
MboI	GATC	2 cut(s)	110, 226
MboII	GAAGA	2 cut(s)	165, 514
MlsI	TGGCCA	2 cut(s)	406, 516
MluCI	AATT	3 cut(s)	92, 96, 383
MluNI	TGGCCA	2 cut(s)	406, 516
MnlI	CCTC	8 cut(s)	64, 123, 151, 247, 285, 372, 483, 583
Mox20I	TGGCCA	2 cut(s)	406, 516
MscI	TGGCCA	2 cut(s)	406, 516
MseI	TTAA	1 cut(s)	95
Msp20I	TGGCCA	2 cut(s)	406, 516
MwoI	GCNNNNNNNGC	2 cut(s)	351, 503
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	2 cut(s)	110, 226
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	2 cut(s)	106, 286
NmuCI	GTSAC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	496
PshBI	ATTAAT	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	106, 286
PspPI	GGNCC	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	2 cut(s)	110, 226
Sau96I	GGNCC	1 cut(s)	533
SetI	ASST	5 cut(s)	29, 202, 270, 364, 430
SfaNI	GCATC	2 cut(s)	459, 493
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	92, 96, 383
SsiI	CCGC	2 cut(s)	393, 495
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	261, 560, 569
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	23, 475, 525
TasI	AATT	3 cut(s)	92, 96, 383
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	2 cut(s)	307, 574
TseFI	GTSAC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	428
TspRI	CASTG	2 cut(s)	307, 574
VpaK11BI	GGWCC	1 cut(s)	533
VspI	ATTAAT	1 cut(s)	95
XapI	RAATTY	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.