RLG00000034855

Peptide methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013036
Physical Location & Seq
Forward (+)
56099248 .. 56103441
4194 bp
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UTR
Exon/CDS
Intron
RLM00000034855

Sequence Viewer

Length: 459 bp
ATGGGTTCCTCTGCTTCTTCTCCAGACAGCAGCACTTCTCAAGAGACTGGTGACTATAAATCTTTAAGTAATGACGAATGGAAAAATCGGCTTACGAAGGAACAATTTTACATTGCTCGTCAAAAGGGAACAGAGAGGGCGTTCACTGGGGAATACTGGAATACCAAAACTCCCGGAACTTACCATTGCATATGTTGTGACACCCCTCTTTTTGAATCATCTACTAAATTTGACAGTGGAACTGGTTGGCCATCTTATTACCAGCCGATAGCAAACAACGTGAAATCCAAGTTAGACTTGTCCATTATCATCATGCCTCGCCAGGAAGTTCTTTGTGCCGTTTGTGATGCTCATCTTGGCCATGTCTTTGATGATGGTCCACCACCAACAGGAAAGCGCTACTGTATTAACAGTGCTTCCCTGAAACTAAAACCAAAGCAGGAGTCAGCCTCAAATTAA

Protein Analysis

153

Amino Acids

16.89

Weight (kDa)

6.81

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 31 - 145 5.8e-50 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53670 AT1G53670
fragaria_vesca FvH4_3g28950 FvH4_3g28950
malus_domestica MD03G1251900.v1.1
prunus_persica Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis pycom03g19940
rosa_chinensis RchiOBHm_Chr5g0051791
rosa_laevigata RLG00000034855
rosa_multiflora Rmu_sc0000068.1_g000007
rosa_roxburghii Rroxscaffold_1G00027330
rosa_rugosa Rorug05G0276900
rosa_samantha Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana Rw5G032930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 248, 358
AcsI RAATTY 1 cut(s) 227
AfeI AGCGCT 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 38
Aor51HI AGCGCT 1 cut(s) 398
AoxI GGCC 2 cut(s) 248, 358
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 227
ArsI GACNNNNNNTTYG 1 cut(s) 428
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 377
BalI TGGCCA 2 cut(s) 250, 360
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 259, 368
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 323
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 400
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 174, 323
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 174, 323
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 156
BplI GAGNNNNNCTC 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 4 cut(s) 52, 151, 161, 247
Bse3DI GCAATG 2 cut(s) 111, 184
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 2 cut(s) 111, 184
BseNI ACTGG 4 cut(s) 52, 151, 161, 247
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 2 cut(s) 250, 360
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 2 cut(s) 250, 360
BspANI GGCC 2 cut(s) 250, 360
BspLI GGNNCC 1 cut(s) 7
BsrDI GCAATG 2 cut(s) 111, 184
BsrI ACTGG 4 cut(s) 52, 151, 161, 247
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 3 cut(s) 236, 404, 413
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 1 cut(s) 399
BstMAI GTCTC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 172, 321
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 250, 360
BtsIMutI CAGTG 3 cut(s) 144, 241, 418
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 377
CviAII CATG 2 cut(s) 313, 362
CviJI RGCY 5 cut(s) 91, 250, 265, 360, 449
CviKI_1 RGCY 5 cut(s) 91, 250, 265, 360, 449
EaeI YGGCCR 2 cut(s) 248, 358
Eco47I GGWCC 1 cut(s) 377
Eco47III AGCGCT 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 316, 365
FaiI YATR 5 cut(s) 57, 191, 193, 314, 363
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 2 cut(s) 312, 361
FauNDI CATATG 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 1 cut(s) 398
GluI GCNGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 2 cut(s) 250, 360
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 399
Hin1II CATG 2 cut(s) 316, 365
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HinfI GANTC 2 cut(s) 215, 443
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 144, 380
Hpy188III TCNNGA 2 cut(s) 23, 41
Hpy8I GTNNAC 2 cut(s) 144, 380
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 3 cut(s) 236, 404, 413
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 316, 365
HspAI GCGC 1 cut(s) 397
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 337
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 50, 197
MboII GAAGA 1 cut(s) 9
MlsI TGGCCA 2 cut(s) 250, 360
MluCI AATT 3 cut(s) 104, 227, 454
MluNI TGGCCA 2 cut(s) 250, 360
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 4 cut(s) 19, 129, 216, 327
Mox20I TGGCCA 2 cut(s) 250, 360
MscI TGGCCA 2 cut(s) 250, 360
MseI TTAA 3 cut(s) 65, 408, 457
Msp20I TGGCCA 2 cut(s) 250, 360
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 174, 323
MvaI CCWGG 1 cut(s) 323
NciI CCSGG 1 cut(s) 174
NdeI CATATG 1 cut(s) 191
NlaIII CATG 2 cut(s) 316, 365
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 50, 197
PfeI GAWTC 1 cut(s) 215
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 377
SaqAI TTAA 3 cut(s) 65, 408, 457
SatI GCNGC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 2 cut(s) 174, 323
SetI ASST 1 cut(s) 282
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 3 cut(s) 104, 227, 454
StyD4I CCNGG 2 cut(s) 172, 321
TaaI ACNGT 3 cut(s) 236, 404, 413
TaiI ACGT 1 cut(s) 282
TasI AATT 3 cut(s) 104, 227, 454
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 3 cut(s) 65, 408, 457
Tru9I TTAA 3 cut(s) 65, 408, 457
TscAI CASTG 3 cut(s) 151, 241, 418
TseFI GTSAC 2 cut(s) 50, 197
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 2 cut(s) 50, 197
TspRI CASTG 3 cut(s) 151, 241, 418
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.