Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013036

Physical Location & Seq

Genomic Coordinates Reverse (-)

8839869 .. 8842528

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G154300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCATCTTCTGGTTGTAGTTTGCGCTTACCAACAACAGCAGCTTGCATTTCCTCGAAAACTCAGTTCGTCTTTGGCTTGAAATCCAAGAATTTTGTATTGAATTCCCGACCTTTGGCCAAACCGAGGCTCTGCTTCTCTGTTCGTGCAATGGGTTCATCTGCTTCTTCACCAGACAGAAGTTCTCAAGAGACAGGTGTGGTTGACTATAAATCTGTAAGTGATCAAGAATGGAAGAAGCGGCTTACCCAGGAACAGTTTTACATCACTCGTAAAAAGGGAACAGAGAGGGCTTTCACTGGGGAATACTGGAATACCAAAACTCAAGGAACTTACCATTGCATATGTTGTGACACACCTCTATTTGAATCATCTACCAAATTTGATAGTGGAACCGGTTGGCCATCTTATTACCAGCCGATAGGAAACAATGTGAAGTCCAAGTTAGACTTGTCTATTATAATCATGCCTCGCACGGAAGTTCTTTGTGCCGCATGTGATGCTCATCTTGGCCATGTCTTTGATGATGGACCACCACCCACGGGAAAGCGTTACTGTATAAACAGCGCCTCTCTGAAACTAAAACCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

198

Amino Acids

21.82

Weight (kDa)

9.14

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53670 AT1G53670
fragaria_vesca	FvH4_3g28950 FvH4_3g28950
malus_domestica	MD03G1251900.v1.1
prunus_persica	Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis	pycom03g19940
rosa_chinensis	RchiOBHm_Chr5g0051791
rosa_laevigata	RLG00000034855
rosa_multiflora	Rmu_sc0000068.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027330
rosa_rugosa	Rorug05G0276900
rosa_samantha	Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana	Rw5G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AciI	CCGC	2 cut(s)	241, 492
AcoI	YGGCCR	3 cut(s)	117, 401, 511
AcsI	RAATTY	3 cut(s)	91, 103, 380
AfiI	CCNNNNNNNGG	3 cut(s)	115, 126, 542
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	82, 103, 368
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	3 cut(s)	117, 401, 511
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	3 cut(s)	91, 103, 380
AsiGI	ACCGGT	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	27, 569
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	530
BalI	TGGCCA	3 cut(s)	119, 403, 513
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	412, 521
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	570
BisI	GCNGC	3 cut(s)	42, 242, 492
BlsI	GCNGC	3 cut(s)	43, 243, 493
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	14, 490
BmuI	ACTGGG	1 cut(s)	309
BpuEI	CTTGAG	2 cut(s)	171, 309
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	125, 249, 540
BsaWI	WCCGGW	2 cut(s)	395, 586
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 126, 542
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	304, 314
Bse3DI	GCAATG	2 cut(s)	156, 337
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	125, 249, 540
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	115, 126, 542
BseMI	GCAATG	2 cut(s)	156, 337
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	304, 314
BseXI	GCAGC	1 cut(s)	53
BshFI	GGCC	3 cut(s)	119, 403, 513
BshTI	ACCGGT	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	396, 587
BslI	CCNNNNNNNGG	3 cut(s)	115, 126, 542
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	119, 403, 513
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	241, 492
BspANI	GGCC	3 cut(s)	119, 403, 513
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	394
BsrDI	GCAATG	2 cut(s)	156, 337
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	304, 314
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	3 cut(s)	125, 249, 540
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	258, 557
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	540
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	27, 569
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	119, 403, 513
BtgI	CCRYGG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	2 cut(s)	27, 569
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	530
CspAI	ACCGGT	1 cut(s)	395
CviAII	CATG	3 cut(s)	466, 495, 515
CviJI	RGCY	9 cut(s)	44, 78, 119, 130, 244, 293, 403, 418, 513
CviKI_1	RGCY	9 cut(s)	44, 78, 119, 130, 244, 293, 403, 418, 513
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	3 cut(s)	117, 401, 511
Eco47I	GGWCC	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	469, 498, 518
FaiI	YATR	8 cut(s)	210, 344, 346, 461, 467, 496, 516, 560
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	3 cut(s)	465, 494, 514
FauNDI	CATATG	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	42, 242, 492
Fsp4HI	GCNGC	3 cut(s)	42, 242, 492
GlaI	GCGC	2 cut(s)	26, 568
GluI	GCNGC	3 cut(s)	42, 242, 492
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	3 cut(s)	119, 403, 513
HapII	CCGG	2 cut(s)	396, 587
HhaI	GCGC	2 cut(s)	27, 569
Hin1II	CATG	3 cut(s)	469, 498, 518
Hin6I	GCGC	2 cut(s)	25, 567
HinP1I	GCGC	2 cut(s)	25, 567
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	396, 587
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	576
Hpy188III	TCNNGA	3 cut(s)	108, 188, 227
Hpy8I	GTNNAC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	258, 557
HpyCH4V	TGCA	3 cut(s)	48, 149, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	469, 498, 518
HspAI	GCGC	2 cut(s)	25, 567
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	8 cut(s)	180, 186, 236, 263, 285, 295, 409, 428
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	2 cut(s)	14, 490
MaeIII	GTNAC	2 cut(s)	350, 551
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	2 cut(s)	159, 247
MlsI	TGGCCA	3 cut(s)	119, 403, 513
MluCI	AATT	3 cut(s)	91, 103, 380
MluNI	TGGCCA	3 cut(s)	119, 403, 513
MnlI	CCTC	6 cut(s)	64, 120, 282, 369, 480, 580
Mox20I	TGGCCA	3 cut(s)	119, 403, 513
MscI	TGGCCA	3 cut(s)	119, 403, 513
Msp20I	TGGCCA	3 cut(s)	119, 403, 513
MspI	CCGG	2 cut(s)	396, 587
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	469, 498, 518
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	368
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	43, 243, 493
PsiI	TTATAA	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	530
SatI	GCNGC	3 cut(s)	42, 242, 492
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	4 cut(s)	46, 115, 199, 361
SfaNI	GCATC	2 cut(s)	14, 490
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	186, 324
SmoI	CTYRAG	2 cut(s)	186, 324
Sse9I	AATT	3 cut(s)	91, 103, 380
SsiI	CCGC	2 cut(s)	241, 492
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	258, 557
TaqI	TCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	91, 103, 380
TauI	GCSGC	2 cut(s)	244, 494
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	3 cut(s)	91, 103, 380
XceI	RCATGY	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.