Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000068.1

Orthogroup ID

OG0013036

Physical Location & Seq

Genomic Coordinates Reverse (-)

37557 .. 41539

Gene Structure 3983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000068.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgggttcctctgcttcttctccagacagcagcacttctcaagagactggtgactataaatctataagtaatgacgaatggaaaaatcggcttacgaaggaacagttttacattactcgtcaaaagggaacagagagggcgttcactggggaatactggaataccaaaactcccggaacttaccattgcatatgttgtgacacccctctttttgaatcatctactaaatttgacagtggaactggttggccatcttattaccagccgattggagataacgtgaagtccaagttagacttgtccattatcatcatgcctcgccaggaagttctttgtgccgtttgtgatgctcatcttggccatgtcttcgatgatggtccaccaccaacaggacagcgctactgtattaacagtgcttccctgaaactacaaccaaagcaggagtcagccttaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016667 GO:0016671 GO:0033743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

152

Amino Acids

16.93

Weight (kDa)

5.57

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53670 AT1G53670
fragaria_vesca	FvH4_3g28950 FvH4_3g28950
malus_domestica	MD03G1251900.v1.1
prunus_persica	Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis	pycom03g19940
rosa_chinensis	RchiOBHm_Chr5g0051791
rosa_laevigata	RLG00000034855
rosa_multiflora	Rmu_sc0000068.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027330
rosa_rugosa	Rorug05G0276900
rosa_samantha	Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana	Rw5G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	248, 358
AcsI	RAATTY	1 cut(s)	227
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	38
Aor51HI	AGCGCT	1 cut(s)	398
AoxI	GGCC	2 cut(s)	248, 358
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	227
ArsI	GACNNNNNNTTYG	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	377
BalI	TGGCCA	2 cut(s)	250, 360
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	2 cut(s)	259, 368
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	400
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	2 cut(s)	174, 323
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	174, 323
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	351
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	4 cut(s)	52, 151, 161, 247
Bse3DI	GCAATG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	323
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	184
BseNI	ACTGG	4 cut(s)	52, 151, 161, 247
BseXI	GCAGC	1 cut(s)	42
BshFI	GGCC	2 cut(s)	250, 360
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	250, 360
BspANI	GGCC	2 cut(s)	250, 360
BspLI	GGNNCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	4 cut(s)	52, 151, 161, 247
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	4 cut(s)	105, 236, 404, 413
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	172, 321
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	250, 360
BtsIMutI	CAGTG	3 cut(s)	144, 241, 418
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	377
CviAII	CATG	2 cut(s)	313, 362
CviJI	RGCY	5 cut(s)	91, 250, 265, 360, 449
CviKI_1	RGCY	5 cut(s)	91, 250, 265, 360, 449
EaeI	YGGCCR	2 cut(s)	248, 358
Eco47I	GGWCC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	316, 365
FaiI	YATR	6 cut(s)	57, 65, 191, 193, 314, 363
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	2 cut(s)	312, 361
FauNDI	CATATG	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	31
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	250, 360
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	316, 365
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	215, 443
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	144, 380
Hpy188III	TCNNGA	2 cut(s)	23, 41
Hpy8I	GTNNAC	2 cut(s)	144, 380
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	4 cut(s)	105, 236, 404, 413
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	316, 365
HspAI	GCGC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	50, 197
MboII	GAAGA	2 cut(s)	9, 358
MlsI	TGGCCA	2 cut(s)	250, 360
MluCI	AATT	2 cut(s)	227, 454
MluNI	TGGCCA	2 cut(s)	250, 360
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	4 cut(s)	19, 129, 216, 327
Mox20I	TGGCCA	2 cut(s)	250, 360
MscI	TGGCCA	2 cut(s)	250, 360
MseI	TTAA	3 cut(s)	408, 452, 457
Msp20I	TGGCCA	2 cut(s)	250, 360
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	174, 323
MvaI	CCWGG	1 cut(s)	323
NciI	CCSGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	191
NlaIII	CATG	2 cut(s)	316, 365
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	2 cut(s)	50, 197
PfeI	GAWTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	408, 452, 457
SatI	GCNGC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	174, 323
SetI	ASST	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	227, 454
StyD4I	CCNGG	2 cut(s)	172, 321
TaaI	ACNGT	4 cut(s)	105, 236, 404, 413
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	227, 454
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	408, 452, 457
Tru9I	TTAA	3 cut(s)	408, 452, 457
TscAI	CASTG	3 cut(s)	151, 241, 418
TseFI	GTSAC	2 cut(s)	50, 197
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	2 cut(s)	50, 197
TspRI	CASTG	3 cut(s)	151, 241, 418
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.