Rroxscaffold_1G00027330

Peptide methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013036
Physical Location & Seq
Forward (+)
34533257 .. 34538069
4813 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00027330.1

Sequence Viewer

Length: 531 bp
ATGGCATTTCAAGTTCATCATTTGAGCTTGAGGTTACCAACAACAACTAGTTGTATTTCTTCAAAAACCCAGTTCGGTTTTGCCTTGAAACCCAGGAATTTAACATTTGATAAACCCAAGAGGCTCTTCTCTGTTCGTGCAATGGGTTCCTCTTTTTCTTCTCCAGACAGCAGCACTCAAGAGACTGGTGACTATAAATCTATAAGTAATGACGAATGGAAAAATCGGCTTACGAAAGAACAGTTTTACATTACTCGTCAAAAGGGAACAGAGAGGGCGTTCACTGGATCATCTACTAAATTTGACAGTGGAACTGGTTGGCCATCTTATTACCAGCCGATAGGAAACAACGTGAAATCCAAGTTAGACTTGTCCATTATCATCATGCCTCGCCAGGAAGTTCTTTGTGCCGTTTGTGATGCTCATCTTGGCCATGTCTTCGATGATGGTCCACCACCGACAGGAAAGCGCTACTGTATTAACAGTGCTTCCTTGAAACTAAAACCAAAGCAGGAGTCAGCCTCAAATTAA

Protein Analysis

176

Amino Acids

19.65

Weight (kDa)

9.51

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 97 - 169 1.7e-28 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53670 AT1G53670
fragaria_vesca FvH4_3g28950 FvH4_3g28950
malus_domestica MD03G1251900.v1.1
prunus_persica Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis pycom03g19940
rosa_chinensis RchiOBHm_Chr5g0051791
rosa_laevigata RLG00000034855
rosa_multiflora Rmu_sc0000068.1_g000007
rosa_roxburghii Rroxscaffold_1G00027330
rosa_rugosa Rorug05G0276900
rosa_samantha Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana Rw5G032930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 2 cut(s) 320, 430
AcsI RAATTY 2 cut(s) 97, 299
AfeI AGCGCT 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 4 cut(s) 11, 63, 88, 496
AhlI ACTAGT 1 cut(s) 47
AjnI CCWGG 2 cut(s) 92, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 295
Aor51HI AGCGCT 1 cut(s) 470
AoxI GGCC 2 cut(s) 320, 430
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 2 cut(s) 97, 299
ArsI GACNNNNNNTTYG 1 cut(s) 500
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 449
BalI TGGCCA 2 cut(s) 322, 432
BbsI GAAGAC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 183
BccI CCATC 2 cut(s) 331, 440
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 94, 395
BcoDI GTCTC 1 cut(s) 176
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 472
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 94, 395
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 94, 395
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 430
BplI GAGNNNNNCTC 1 cut(s) 506
BpmI CTGGAG 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 49, 162
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse1I ACTGG 4 cut(s) 70, 190, 289, 319
Bse3DI GCAATG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 2 cut(s) 94, 395
BseDI CCNNGG 1 cut(s) 92
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 4 cut(s) 70, 190, 289, 319
BseXI GCAGC 1 cut(s) 183
BshFI GGCC 2 cut(s) 322, 432
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 2 cut(s) 322, 432
Bsp143I GATC 1 cut(s) 287
BspANI GGCC 2 cut(s) 322, 432
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 4 cut(s) 70, 190, 289, 319
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 94, 395
Bst4CI ACNGT 4 cut(s) 243, 308, 476, 485
Bst6I CTCTTC 1 cut(s) 131
BstEII GGTNACC 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 94, 395
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 92, 393
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 430
BsuRI GGCC 2 cut(s) 322, 432
BtsIMutI CAGTG 3 cut(s) 282, 313, 490
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 449
CviAII CATG 2 cut(s) 385, 434
CviJI RGCY 7 cut(s) 27, 124, 229, 322, 337, 432, 521
CviKI_1 RGCY 7 cut(s) 27, 124, 229, 322, 337, 432, 521
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 320, 430
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 449
Eco47III AGCGCT 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 33
EcoRII CCWGG 2 cut(s) 92, 393
FaeI CATG 2 cut(s) 388, 437
FaiI YATR 4 cut(s) 195, 203, 386, 435
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 353, 385
FatI CATG 2 cut(s) 384, 433
Fnu4HI GCNGC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 470
GluI GCNGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 2 cut(s) 322, 432
HhaI GCGC 1 cut(s) 471
Hin1II CATG 2 cut(s) 388, 437
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 1 cut(s) 515
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 282, 452
Hpy188III TCNNGA 2 cut(s) 164, 179
Hpy8I GTNNAC 2 cut(s) 282, 452
HpyCH4III ACNGT 4 cut(s) 243, 308, 476, 485
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 2 cut(s) 388, 437
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 1 cut(s) 287
LguI GCTCTTC 1 cut(s) 131
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 33, 188
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 4 cut(s) 51, 118, 150, 430
MlsI TGGCCA 2 cut(s) 322, 432
MluCI AATT 3 cut(s) 97, 299, 526
MluNI TGGCCA 2 cut(s) 322, 432
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 5 cut(s) 24, 114, 160, 267, 399
Mox20I TGGCCA 2 cut(s) 322, 432
MscI TGGCCA 2 cut(s) 322, 432
MseI TTAA 3 cut(s) 101, 480, 529
Msp20I TGGCCA 2 cut(s) 322, 432
MspR9I CCNGG 2 cut(s) 94, 395
MvaI CCWGG 2 cut(s) 94, 395
NdeII GATC 1 cut(s) 287
NlaIII CATG 2 cut(s) 388, 437
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 92, 393
PspEI GGTNACC 1 cut(s) 33
PspGI CCWGG 2 cut(s) 92, 393
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 449
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 101, 480, 529
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 94, 395
SetI ASST 3 cut(s) 29, 35, 354
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 28, 177
SmoI CTYRAG 2 cut(s) 28, 177
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 3 cut(s) 97, 299, 526
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 92, 393
TaaI ACNGT 4 cut(s) 243, 308, 476, 485
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 441
TasI AATT 3 cut(s) 97, 299, 526
Tru1I TTAA 3 cut(s) 101, 480, 529
Tru9I TTAA 3 cut(s) 101, 480, 529
TscAI CASTG 3 cut(s) 289, 313, 490
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 5
TspRI CASTG 3 cut(s) 289, 313, 490
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 2 cut(s) 97, 299
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.