AT1G54180

Transcription factor BRX N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015984
Physical Location & Seq
Forward (+)
20227168 .. 20230237
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54180.2

Sequence Viewer

Length: 1113 bp
ATGCTGACGTGTATAGCTTGCACGAAGCAGCTTAACACCAACAATGGCGGATCTACTCGAGAAGAAGATGAAGAACACGGAGTTATTGGTACCCCTAGGACTAAGCAAGCGATTAAATCACTGACGTCACAGCTAAAAGACATGGCAGTAAAGGCTTCAGGGGCATACAAAAACTGCAAACCGTGTTCTGGGACAACAAACCGGAATCAGAATCGAAACTATGCTGATTCGGATGCTGCTTCAGATTCTGGAAGATTCCATTATTCATACCAGAGAGCTGGGACTGCAACCTCAACTCCTAAGATTTGGGGGAATGAAATGGAGTCAAGGTTAAAAGGGATTTCTAGTGAAGAAGGTACACCTACGTCTATGAGTGGTCGAACAGAATCCATAGTGTTCATGGAGGATGATGAGGTCAAGGAATGGGTTGCTCAAGTGGAGCCTGGTGTTCTCATCACATTTGTGTCATTGCCTCAGGGAGGGAATGATCTTAAGAGAATTCGGTTCAGAAGCACCAGGTTTCCATATTACCGAGACCAGCTTCTGTTGTGGTGCCGTCAAGGATGGGTATTTTGGCCCCAGAATTGTCGTGAGATGTTTAATAAATGGCAAGCTCAAAAATGGTGGGTGGAGAATTTCGAGAAGGTCATGGAGTTATACAACGTGCAGTTCAATCAGCAGAGCGTACCGCTTCAAACTCCTCCTGTATCTGAAGATGGGGGCTCACAAATACAGTCCGTGAAGGACAGTCCTGTAACTCCACCGCTGGAAAGAGAGCGACCTCACCGCAATATTCCAGGCTCTTCTGGTTTTGCTTCAACCCCAAAGCTCTCTAGCATCAGCGGAACCAAGACTGAAACATCATCTATCGATGGTTCTGCTAGAAGTAGCTCGGTAGATCGATCCGAGGAGGTCTCAGTGAGTAACGCAAGTGACATGGAAAGTGAATGGGTAGAACAAGATGAGCCTGGTATCTATATTACTATCAGAGCTTTACCAGATGGAAATCGCGAGCTTAGGCGAGTTCGATTCAGCCGAGACAAGTTTGGGGAAACACATGCGAGGTTATGGTGGGAACAAAACAGAGCGCGTATACAACAGCAATACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

370

Amino Acids

41.99

Weight (kDa)

6.93

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 31 - 62 7.4e-17 Transcription factor BRX N-terminal domain
BRX PF08381 140 - 194 4.2e-25 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 288 - 343 3e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54180 AT1G54180
fragaria_vesca FvH4_6g34460 FvH4_6g34460
malus_domestica MD09G1186000.v1.1
prunus_persica Prupe.3G043800_v2.0.a1
pyrus_communis pycom09g10320
rosa_chinensis RchiOBHm_Chr2g0144791
rosa_laevigata RLG00000020113
rosa_multiflora Rmu_sc0002354.1_g000028
rosa_roxburghii Rroxscaffold_2G00100970
rosa_rugosa Rorug02G0389600
rosa_samantha Rh2AG441400 Rh2CG428700
rosa_wichuraiana Rw2G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 128
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 89, 552
AccI GTMKAC 1 cut(s) 1093
AccII CGCG 2 cut(s) 1011, 1090
AciI CCGC 5 cut(s) 48, 689, 764, 787, 843
AclWI GGATC 2 cut(s) 58, 897
AcsI RAATTY 2 cut(s) 498, 634
AcuI CTGAAG 3 cut(s) 141, 225, 732
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 3 cut(s) 91, 358, 687
AfiI CCNNNNNNNGG 2 cut(s) 188, 479
AflII CTTAAG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 3 cut(s) 673, 695, 819
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 4 cut(s) 442, 515, 796, 967
AleI CACNNNNGTG 1 cut(s) 461
Alw26I GTCTC 3 cut(s) 528, 919, 1032
AlwI GGATC 2 cut(s) 58, 897
AlwNI CAGNNNCTG 2 cut(s) 248, 544
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 2 cut(s) 28, 236
ApoI RAATTY 2 cut(s) 498, 634
Asp718I GGTACC 1 cut(s) 89
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 1 cut(s) 1090
AspS9I GGNCC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 776
AvaI CYCGRG 1 cut(s) 57
AvrII CCTAGG 1 cut(s) 95
AxyI CCTNAGG 1 cut(s) 474
BanI GGYRCC 2 cut(s) 89, 552
BanII GRGCYC 1 cut(s) 725
BbvI GCAGC 2 cut(s) 40, 223
BccI CCATC 4 cut(s) 558, 710, 866, 995
BceAI ACGGC 1 cut(s) 540
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BciT130I CCWGG 4 cut(s) 444, 517, 798, 969
BcoDI GTCTC 3 cut(s) 528, 919, 1032
BfaI CTAG 4 cut(s) 96, 345, 834, 882
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 2 cut(s) 29, 237
BlnI CCTAGG 1 cut(s) 95
BlsI GCNGC 2 cut(s) 30, 238
Bme1390I CCNGG 4 cut(s) 444, 517, 798, 969
BmeT110I CYCGRG 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 5 cut(s) 91, 441, 554, 578, 847
BmrFI CCNGG 4 cut(s) 444, 517, 798, 969
BmsI GCATC 2 cut(s) 223, 846
BplI GAGNNNNNCTC 2 cut(s) 899, 931
Bpu10I CCTNAGC 1 cut(s) 1016
BpuEI CTTGAG 1 cut(s) 417
Bsa29I ATCGAT 2 cut(s) 870, 901
BsaBI GATNNNNATC 1 cut(s) 1005
BsaHI GRCGYC 1 cut(s) 125
BsaI GGTCTC 2 cut(s) 528, 919
BsaJI CCNNGG 2 cut(s) 95, 906
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 4 cut(s) 280, 310, 314, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 479
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 4 cut(s) 444, 517, 798, 969
BseCI ATCGAT 2 cut(s) 870, 901
BseDI CCNNGG 2 cut(s) 95, 906
BseGI GGATG 3 cut(s) 238, 412, 569
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 2 cut(s) 188, 479
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 2 cut(s) 488, 930
BseRI GAGGAG 2 cut(s) 690, 923
BseXI GCAGC 2 cut(s) 40, 223
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 2 cut(s) 1011, 1090
BshFI GGCC 1 cut(s) 577
BshNI GGYRCC 2 cut(s) 89, 552
BshVI ATCGAT 2 cut(s) 870, 901
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 202
BslFI GGGAC 2 cut(s) 205, 295
BslI CCNNNNNNNGG 2 cut(s) 188, 479
BsmAI GTCTC 3 cut(s) 528, 919, 1032
BsmFI GGGAC 2 cut(s) 205, 295
BsnI GGCC 1 cut(s) 577
Bso31I GGTCTC 2 cut(s) 528, 919
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 725
Bsp143I GATC 4 cut(s) 50, 487, 898, 902
Bsp68I TCGCGA 1 cut(s) 1011
BspACI CCGC 5 cut(s) 48, 689, 764, 787, 843
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 2 cut(s) 487, 929
BspDI ATCGAT 2 cut(s) 870, 901
BspFNI CGCG 2 cut(s) 1011, 1090
BspLI GGNNCC 5 cut(s) 91, 441, 554, 578, 847
BspPI GGATC 2 cut(s) 58, 897
BspQI GCTCTTC 1 cut(s) 808
BspT107I GGYRCC 2 cut(s) 89, 552
BspTI CTTAAG 1 cut(s) 491
BspTNI GGTCTC 2 cut(s) 528, 919
BsrDI GCAATG 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 95, 906
BssMI GATC 4 cut(s) 50, 487, 898, 902
BssNAI GTATAC 1 cut(s) 1094
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 95
Bst1107I GTATAC 1 cut(s) 1094
Bst2UI CCWGG 4 cut(s) 444, 517, 798, 969
Bst4CI ACNGT 3 cut(s) 183, 735, 749
Bst6I CTCTTC 1 cut(s) 808
BstACI GRCGYC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 491
BstC8I GCNNGC 4 cut(s) 19, 108, 612, 1013
BstDEI CTNAG 5 cut(s) 102, 300, 474, 916, 1016
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 238, 412, 569
BstFNI CGCG 2 cut(s) 1011, 1090
BstHHI GCGC 1 cut(s) 1090
BstKTI GATC 4 cut(s) 53, 490, 901, 905
BstMAI GTCTC 3 cut(s) 528, 919, 1032
BstMBI GATC 4 cut(s) 50, 487, 898, 902
BstMWI GCNNNNNNNGC 3 cut(s) 152, 161, 284
BstNI CCWGG 4 cut(s) 444, 517, 798, 969
BstNSI RCATGY 1 cut(s) 1061
BstSCI CCNGG 4 cut(s) 442, 515, 796, 967
BstUI CGCG 2 cut(s) 1011, 1090
BstV1I GCAGC 2 cut(s) 40, 223
BstX2I RGATCY 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 1094
Bsu15I ATCGAT 2 cut(s) 870, 901
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 1 cut(s) 577
BsuTUI ATCGAT 2 cut(s) 870, 901
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 3 cut(s) 238, 412, 569
BtsIMutI CAGTG 2 cut(s) 119, 924
BtuMI TCGCGA 1 cut(s) 1011
Cac8I GCNNGC 4 cut(s) 19, 108, 612, 1013
CaiI CAGNNNCTG 2 cut(s) 248, 544
CfoI GCGC 1 cut(s) 1090
Cfr13I GGNCC 1 cut(s) 576
ClaI ATCGAT 2 cut(s) 870, 901
CsiI ACCWGGT 1 cut(s) 515
Csp6I GTAC 3 cut(s) 90, 357, 686
CspCI CAANNNNNGTGG 2 cut(s) 605, 640
CviAII CATG 5 cut(s) 142, 400, 649, 937, 1058
CviQI GTAC 3 cut(s) 90, 357, 686
DdeI CTNAG 5 cut(s) 102, 300, 474, 916, 1016
DpnI GATC 4 cut(s) 52, 489, 900, 904
DpnII GATC 4 cut(s) 50, 487, 898, 902
Eam1104I CTCTTC 1 cut(s) 808
EarI CTCTTC 1 cut(s) 808
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 725
Eco31I GGTCTC 2 cut(s) 528, 919
Eco57I CTGAAG 3 cut(s) 141, 225, 732
Eco81I CCTNAGG 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 498
EcoRII CCWGG 4 cut(s) 442, 515, 796, 967
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 5 cut(s) 145, 403, 652, 940, 1061
FaqI GGGAC 2 cut(s) 205, 295
FatI CATG 5 cut(s) 141, 399, 648, 936, 1057
FblI GTMKAC 1 cut(s) 1093
Fnu4HI GCNGC 2 cut(s) 29, 237
FokI GGATG 3 cut(s) 245, 419, 576
FriOI GRGCYC 1 cut(s) 725
Fsp4HI GCNGC 2 cut(s) 29, 237
FspBI CTAG 4 cut(s) 96, 345, 834, 882
GlaI GCGC 1 cut(s) 1089
GluI GCNGC 2 cut(s) 29, 237
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 577
HapII CCGG 1 cut(s) 202
HhaI GCGC 1 cut(s) 1090
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 5 cut(s) 145, 403, 652, 940, 1061
Hin6I GCGC 1 cut(s) 1088
HinP1I GCGC 1 cut(s) 1088
HinfI GANTC 8 cut(s) 205, 211, 227, 245, 255, 323, 386, 1029
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 776
Hpy166II GTNNAC 2 cut(s) 359, 1094
Hpy188I TCNGA 7 cut(s) 210, 232, 244, 509, 712, 907, 989
Hpy188III TCNNGA 5 cut(s) 59, 249, 590, 640, 1010
Hpy8I GTNNAC 2 cut(s) 359, 1094
HpyAV CCTTC 3 cut(s) 347, 637, 736
HpyCH4III ACNGT 3 cut(s) 183, 735, 749
HpyCH4IV ACGT 4 cut(s) 8, 125, 365, 663
HpyCH4V TGCA 4 cut(s) 21, 177, 287, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 161, 284
HpyF3I CTNAG 5 cut(s) 102, 300, 474, 916, 1016
HpySE526I ACGT 4 cut(s) 8, 125, 365, 663
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 5 cut(s) 145, 403, 652, 940, 1061
HspAI GCGC 1 cut(s) 1088
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 4 cut(s) 50, 487, 898, 902
LguI GCTCTTC 1 cut(s) 808
LmnI GCTCC 1 cut(s) 439
Lsp1109I GCAGC 2 cut(s) 40, 223
LweI GCATC 2 cut(s) 223, 846
MabI ACCWGGT 1 cut(s) 515
MaeI CTAG 4 cut(s) 96, 345, 834, 882
MaeII ACGT 4 cut(s) 8, 125, 365, 663
MaeIII GTNAC 4 cut(s) 126, 754, 923, 932
MalI GATC 4 cut(s) 52, 489, 900, 904
MboI GATC 4 cut(s) 50, 487, 898, 902
MboII GAAGA 7 cut(s) 74, 77, 83, 264, 362, 725, 795
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 725
MluCI AATT 3 cut(s) 498, 583, 634
MlyI GAGTC 1 cut(s) 332
MseI TTAA 5 cut(s) 33, 114, 332, 492, 600
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 2 cut(s) 766, 843
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 4 cut(s) 444, 517, 798, 969
MvaI CCWGG 4 cut(s) 444, 517, 798, 969
MvnI CGCG 2 cut(s) 1011, 1090
MwoI GCNNNNNNNGC 3 cut(s) 152, 161, 284
NdeII GATC 4 cut(s) 50, 487, 898, 902
NlaIII CATG 5 cut(s) 145, 403, 652, 940, 1061
NlaIV GGNNCC 5 cut(s) 91, 441, 554, 578, 847
NmeAIII GCCGAG 1 cut(s) 1061
NmuCI GTSAC 2 cut(s) 126, 932
NruI TCGCGA 1 cut(s) 1011
NspI RCATGY 1 cut(s) 1061
OliI CACNNNNGTG 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 808
PcsI WCGNNNNNNNCGW 1 cut(s) 1033
PfeI GAWTC 7 cut(s) 205, 211, 227, 245, 255, 386, 1029
PkrI GCNGC 2 cut(s) 30, 238
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp6I CCWGG 4 cut(s) 442, 515, 796, 967
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 4 cut(s) 442, 515, 796, 967
PspN4I GGNNCC 5 cut(s) 91, 441, 554, 578, 847
PspPI GGNCC 1 cut(s) 576
PstNI CAGNNNCTG 2 cut(s) 248, 544
PsuI RGATCY 1 cut(s) 50
RruI TCGCGA 1 cut(s) 1011
RsaI GTAC 3 cut(s) 91, 358, 687
RsaNI GTAC 3 cut(s) 90, 357, 686
RseI CAYNNNNRTG 1 cut(s) 461
SapI GCTCTTC 1 cut(s) 808
SaqAI TTAA 5 cut(s) 33, 114, 332, 492, 600
SatI GCNGC 2 cut(s) 29, 237
Sau3AI GATC 4 cut(s) 50, 487, 898, 902
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 4 cut(s) 444, 517, 798, 969
SduI GDGCHC 1 cut(s) 725
SexAI ACCWGGT 1 cut(s) 515
SfaNI GCATC 2 cut(s) 223, 846
Sfr274I CTCGAG 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 3 cut(s) 57, 432, 491
SmoI CTYRAG 3 cut(s) 57, 432, 491
Sse9I AATT 3 cut(s) 498, 583, 634
SsiI CCGC 5 cut(s) 48, 689, 764, 787, 843
SspI AATATT 1 cut(s) 793
SspMI CTAG 4 cut(s) 96, 345, 834, 882
StyD4I CCNGG 4 cut(s) 442, 515, 796, 967
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 183, 735, 749
TaiI ACGT 4 cut(s) 11, 128, 368, 666
TaqI TCGA 7 cut(s) 58, 214, 379, 639, 870, 901, 1027
TasI AATT 3 cut(s) 498, 583, 634
TfiI GAWTC 7 cut(s) 205, 211, 227, 245, 255, 386, 1029
Tru1I TTAA 5 cut(s) 33, 114, 332, 492, 600
Tru9I TTAA 5 cut(s) 33, 114, 332, 492, 600
TscAI CASTG 2 cut(s) 126, 924
TseFI GTSAC 2 cut(s) 126, 932
TseI GCWGC 2 cut(s) 28, 236
Tsp45I GTSAC 2 cut(s) 126, 932
TspDTI ATGAA 4 cut(s) 84, 255, 330, 388
TspGWI ACGGA 2 cut(s) 93, 727
TspRI CASTG 2 cut(s) 126, 924
Vha464I CTTAAG 1 cut(s) 491
XagI CCTNNNNNAGG 1 cut(s) 477
XapI RAATTY 2 cut(s) 498, 634
XceI RCATGY 1 cut(s) 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 57
XmaJI CCTAGG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 1093
XspI CTAG 4 cut(s) 96, 345, 834, 882
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.