FvH4_6g34460

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015984
Physical Location & Seq
Forward (+)
27189949 .. 27194167
4219 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34460.t1

Sequence Viewer

Length: 1104 bp
ATGCTGACGTGTATTCCCTGCTCCAAGCAGCAGCTCAACAATGGATCTCTGCCGCACCAGGACGACGACGACGGCGTCGTCGCCACTCCCCGGACGAAGCAAGCCCTCAAGGCTCTCACTGCTCAGATCAAGGATATGGCATTGAAGGCGTCGGGAGCGTACAAGAACTGCAAGCCGTGTGCGAGGCCGTGCGGCGACCACCGGAACCGGAACTGCGCGGATTCCGACACGGCGTCGGAGTCGGCAAAGTTTCACTGCTCGTACCGGAGGACCGGGAGCGCGAATTCGACGCCGAGGATGTGGGGGAAGGAGATGGAGAGCCGGCTGAAGGCGCTTTCGAGCGGCGAAGGGACGCCGACGTCGGTGAGTGGGAGGACGGAGTCTGTGGTGTTGGTGGAGGATGATGAGCCGAAAGAGTGGGAAGCGCAAGTGGAGCCTGGTGTGCTCATCACTTTTGTTTCTCTGCCCCAAGGAGGAAATGATCTCAAGCGCATTCGATTTAGCCGGGAACTGTTTAACAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAATTATACAATGTGCAAAGATTTAATCACCAAGAAGTCCCACTTCCAACACCTCCTAGAGATGAAGACGAGAGTTCAAAGGTTGAATCTTCGAGGGAAAGTCCTGTGACTCCCCCAATGAACAAAGAACGCCTGCCCCGCAACATTCATCGGCCAATGGGTGTGGGGTACTCTTCATCGGATTCACTTGACCACCATCCAATGCAATCCCGTCAGTACTGTGACACCAGTGGTTTAGCTTCAACACCTAAACTTTCCAGCATCAGTGGAGTCAAAACTGAGTCATCATCAATAGATGGTTCTATAAGGAGTAGTTCAGAGGCAGATCGCTCAGAGGTTTCAATTAGCAACGCCAGTGATATGGAGACTGAATGGGTTGAGCAGGATGAACCAGGAGTGTACATCACTATCAGAGCATTGCCAGGTGGGGGTCGGGAGCTCAGACGTGTCCGGTTCAGCCGTGAAAAGTTTGGTGAAATGCATGCGAGATTGTGGTGGGAAGAAAATAGGGCCAGGATTCAGGAGCAGTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

368

Amino Acids

41.31

Weight (kDa)

6.29

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 28 - 60 4.5e-15 Transcription factor BRX N-terminal domain
BRX PF08381 138 - 192 1.5e-24 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 311 - 366 5.3e-28 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54180 AT1G54180
fragaria_vesca FvH4_6g34460 FvH4_6g34460
malus_domestica MD09G1186000.v1.1
prunus_persica Prupe.3G043800_v2.0.a1
pyrus_communis pycom09g10320
rosa_chinensis RchiOBHm_Chr2g0144791
rosa_laevigata RLG00000020113
rosa_multiflora Rmu_sc0002354.1_g000028
rosa_roxburghii Rroxscaffold_2G00100970
rosa_rugosa Rorug02G0389600
rosa_samantha Rh2AG441400 Rh2CG428700
rosa_wichuraiana Rw2G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 74, 77, 358
AatII GACGTC 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 342
AccII CGCG 2 cut(s) 218, 281
AciI CCGC 5 cut(s) 53, 192, 218, 342, 706
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 6 cut(s) 75, 149, 233, 290, 353, 359
AfaI GTAC 6 cut(s) 161, 263, 737, 785, 968, 1097
AfiI CCNNNNNNNGG 4 cut(s) 90, 328, 473, 995
AflIII ACRYGT 2 cut(s) 8, 1012
AgsI TTSAA 5 cut(s) 145, 645, 653, 810, 909
AhdI GACNNNNNGTC 1 cut(s) 232
AjiI CACGTC 2 cut(s) 9, 1013
AjnI CCWGG 5 cut(s) 57, 436, 958, 988, 1079
AluBI AGCT 4 cut(s) 34, 530, 806, 1006
AluI AGCT 4 cut(s) 34, 530, 806, 1006
Alw21I GWGCWC 2 cut(s) 447, 1008
Alw26I GTCTC 1 cut(s) 926
AlwI GGATC 1 cut(s) 52
AoxI GGCC 3 cut(s) 185, 719, 1077
ApeKI GCWGC 2 cut(s) 28, 31
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 5 cut(s) 218, 281, 334, 427, 492
AspS9I GGNCC 2 cut(s) 270, 1077
AsuC2I CCSGG 3 cut(s) 91, 274, 506
AsuHPI GGTGA 3 cut(s) 376, 587, 1052
AvaII GGWCC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 1008
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 2 cut(s) 447, 1008
BbvI GCAGC 2 cut(s) 40, 43
BccI CCATC 3 cut(s) 307, 771, 857
BceAI ACGGC 5 cut(s) 88, 160, 172, 246, 1011
BciT130I CCWGG 5 cut(s) 59, 438, 960, 990, 1081
BcnI CCSGG 3 cut(s) 91, 274, 506
BcoDI GTCTC 1 cut(s) 926
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 5 cut(s) 29, 32, 53, 193, 343
BlsI GCNGC 5 cut(s) 30, 33, 54, 194, 344
BmcAI AGTACT 2 cut(s) 785, 1097
Bme1390I CCNGG 8 cut(s) 59, 91, 274, 438, 506, 960, 990, 1081
Bme18I GGWCC 1 cut(s) 270
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgBI CACGTC 2 cut(s) 9, 1013
BmgT120I GGNCC 2 cut(s) 270, 1077
BmiI GGNNCC 2 cut(s) 206, 435
BmrFI CCNGG 8 cut(s) 59, 91, 274, 438, 506, 960, 990, 1081
BmsI GCATC 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 92, 470
BpuMI CCSGG 3 cut(s) 91, 274, 506
BsaHI GRCGYC 6 cut(s) 75, 149, 233, 290, 353, 359
BsaJI CCNNGG 3 cut(s) 89, 293, 469
BsaWI WCCGGW 4 cut(s) 201, 207, 264, 1017
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 328, 473, 995
Bse118I RCCGGY 1 cut(s) 321
Bse1I ACTGG 2 cut(s) 795, 921
Bse3DI GCAATG 1 cut(s) 983
BseBI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
BseDI CCNNGG 3 cut(s) 89, 293, 469
BseGI GGATG 4 cut(s) 303, 406, 763, 958
BseLI CCNNNNNNNGG 4 cut(s) 90, 328, 473, 995
BseMI GCAATG 1 cut(s) 983
BseMII CTCAG 4 cut(s) 137, 837, 912, 1021
BseNI ACTGG 2 cut(s) 795, 921
BseXI GCAGC 2 cut(s) 40, 43
Bsh1236I CGCG 2 cut(s) 218, 281
BshFI GGCC 3 cut(s) 187, 721, 1079
BsiHKAI GWGCWC 2 cut(s) 447, 1008
BsiSI CCGG 8 cut(s) 91, 202, 208, 265, 273, 322, 505, 1018
BslFI GGGAC 2 cut(s) 364, 590
BslI CCNNNNNNNGG 4 cut(s) 90, 328, 473, 995
BsmAI GTCTC 1 cut(s) 926
BsmFI GGGAC 2 cut(s) 364, 590
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 3 cut(s) 187, 721, 1079
Bsp1286I GDGCHC 2 cut(s) 447, 1008
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 4 cut(s) 44, 126, 481, 892
BspACI CCGC 5 cut(s) 53, 192, 218, 342, 706
BspANI GGCC 3 cut(s) 187, 721, 1079
BspCNI CTCAG 4 cut(s) 136, 838, 911, 1020
BspFNI CGCG 2 cut(s) 218, 281
BspLI GGNNCC 2 cut(s) 206, 435
BspPI GGATC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 983
BsrFI RCCGGY 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 966
BsrI ACTGG 2 cut(s) 795, 921
BssAI RCCGGY 1 cut(s) 321
BssECI CCNNGG 3 cut(s) 89, 293, 469
BssMI GATC 4 cut(s) 44, 126, 481, 892
BssNI GRCGYC 6 cut(s) 75, 149, 233, 290, 353, 359
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
Bst4CI ACNGT 2 cut(s) 513, 788
Bst6I CTCTTC 1 cut(s) 745
BstACI GRCGYC 6 cut(s) 75, 149, 233, 290, 353, 359
BstAUI TGTACA 1 cut(s) 966
BstC8I GCNNGC 6 cut(s) 102, 173, 323, 528, 701, 1050
BstDEI CTNAG 4 cut(s) 123, 846, 898, 1007
BstF5I GGATG 4 cut(s) 303, 406, 763, 958
BstFNI CGCG 2 cut(s) 218, 281
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 5 cut(s) 218, 281, 334, 427, 492
BstKTI GATC 4 cut(s) 47, 129, 484, 895
BstMAI GTCTC 1 cut(s) 926
BstMBI GATC 4 cut(s) 44, 126, 481, 892
BstMWI GCNNNNNNNGC 8 cut(s) 110, 119, 146, 155, 331, 433, 442, 705
BstNI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 8 cut(s) 57, 89, 272, 436, 504, 958, 988, 1079
BstUI CGCG 2 cut(s) 218, 281
BstV1I GCAGC 2 cut(s) 40, 43
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 928
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 3 cut(s) 187, 721, 1079
BtrI CACGTC 2 cut(s) 9, 1013
BtsCI GGATG 4 cut(s) 303, 406, 763, 958
BtsI GCAGTG 2 cut(s) 117, 253
BtsIMutI CAGTG 5 cut(s) 117, 253, 802, 838, 928
Cac8I GCNNGC 6 cut(s) 102, 173, 323, 528, 701, 1050
CfoI GCGC 5 cut(s) 218, 281, 334, 427, 492
Cfr10I RCCGGY 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 270, 1077
CseI GACGC 5 cut(s) 64, 138, 222, 298, 361
Csp6I GTAC 6 cut(s) 160, 262, 736, 784, 967, 1096
CspCI CAANNNNNGTGG 4 cut(s) 521, 556, 711, 746
CviAII CATG 2 cut(s) 565, 1049
CviQI GTAC 6 cut(s) 160, 262, 736, 784, 967, 1096
DdeI CTNAG 4 cut(s) 123, 846, 898, 1007
DpnI GATC 4 cut(s) 46, 128, 483, 894
DpnII GATC 4 cut(s) 44, 126, 481, 892
DrdI GACNNNNNNGTC 3 cut(s) 74, 77, 358
DriI GACNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 3 cut(s) 74, 77, 358
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 745
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 745
Ecl136II GAGCTC 1 cut(s) 1006
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 1008
Eco47I GGWCC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 1006
Eco57I CTGAAG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 1006
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 5 cut(s) 57, 436, 958, 988, 1079
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 1050
EcoT38I GRGCYC 1 cut(s) 1008
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 568, 1052
FaiI YATR 8 cut(s) 137, 555, 566, 574, 872, 929, 1050, 1102
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 364, 590
FatI CATG 2 cut(s) 564, 1048
FauI CCCGC 1 cut(s) 713
Fnu4HI GCNGC 5 cut(s) 29, 32, 53, 193, 343
FokI GGATG 4 cut(s) 310, 413, 750, 965
FriOI GRGCYC 1 cut(s) 1008
Fsp4HI GCNGC 5 cut(s) 29, 32, 53, 193, 343
FspBI CTAG 1 cut(s) 624
GlaI GCGC 5 cut(s) 217, 280, 333, 426, 491
GluI GCNGC 5 cut(s) 29, 32, 53, 193, 343
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 3 cut(s) 187, 721, 1079
HapII CCGG 8 cut(s) 91, 202, 208, 265, 273, 322, 505, 1018
HgaI GACGC 5 cut(s) 64, 138, 222, 298, 361
HhaI GCGC 5 cut(s) 218, 281, 334, 427, 492
Hin1I GRCGYC 6 cut(s) 75, 149, 233, 290, 353, 359
Hin1II CATG 2 cut(s) 568, 1052
Hin6I GCGC 5 cut(s) 216, 279, 332, 425, 490
HinP1I GCGC 5 cut(s) 216, 279, 332, 425, 490
HinfI GANTC 9 cut(s) 221, 239, 380, 653, 676, 749, 837, 848, 1084
HpaII CCGG 8 cut(s) 91, 202, 208, 265, 273, 322, 505, 1018
HphI GGTGA 3 cut(s) 376, 587, 1052
Hpy166II GTNNAC 1 cut(s) 967
Hpy188I TCNGA 8 cut(s) 126, 226, 238, 748, 886, 901, 980, 1010
Hpy188III TCNNGA 3 cut(s) 153, 1001, 1088
Hpy8I GTNNAC 1 cut(s) 967
HpyAV CCTTC 4 cut(s) 139, 301, 322, 341
HpyCH4III ACNGT 2 cut(s) 513, 788
HpyCH4IV ACGT 3 cut(s) 8, 359, 1012
HpyCH4V TGCA 4 cut(s) 171, 583, 772, 1048
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 119, 146, 155, 331, 433, 442, 705
HpyF3I CTNAG 4 cut(s) 123, 846, 898, 1007
HpySE526I ACGT 3 cut(s) 8, 359, 1012
Hsp92I GRCGYC 6 cut(s) 75, 149, 233, 290, 353, 359
Hsp92II CATG 2 cut(s) 568, 1052
HspAI GCGC 5 cut(s) 216, 279, 332, 425, 490
KroI GCCGGC 1 cut(s) 321
KroNI GCCGGC 1 cut(s) 323
Kzo9I GATC 4 cut(s) 44, 126, 481, 892
LmnI GCTCC 6 cut(s) 26, 155, 276, 433, 1003, 1090
Lsp1109I GCAGC 2 cut(s) 40, 43
LweI GCATC 1 cut(s) 837
MaeI CTAG 1 cut(s) 624
MaeII ACGT 3 cut(s) 8, 359, 1012
MaeIII GTNAC 2 cut(s) 673, 788
MalI GATC 4 cut(s) 46, 128, 483, 894
MbiI CCGCTC 1 cut(s) 342
MboI GATC 4 cut(s) 44, 126, 481, 892
MboII GAAGA 4 cut(s) 644, 648, 732, 1079
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 447, 1008
MluCI AATT 4 cut(s) 283, 550, 569, 909
MlyI GAGTC 5 cut(s) 248, 389, 670, 846, 857
MmeI TCCRAC 3 cut(s) 216, 249, 638
Mph1103I ATGCAT 1 cut(s) 1050
MroNI GCCGGC 1 cut(s) 321
MseI TTAA 2 cut(s) 516, 591
MspI CCGG 8 cut(s) 91, 202, 208, 265, 273, 322, 505, 1018
MspR9I CCNGG 8 cut(s) 59, 91, 274, 438, 506, 960, 990, 1081
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
MvnI CGCG 2 cut(s) 218, 281
MwoI GCNNNNNNNGC 8 cut(s) 110, 119, 146, 155, 331, 433, 442, 705
NaeI GCCGGC 1 cut(s) 323
NciI CCSGG 3 cut(s) 91, 274, 506
NdeII GATC 4 cut(s) 44, 126, 481, 892
NgoMIV GCCGGC 1 cut(s) 321
NlaIII CATG 2 cut(s) 568, 1052
NlaIV GGNNCC 2 cut(s) 206, 435
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 2 cut(s) 673, 788
NsiI ATGCAT 1 cut(s) 1050
NspI RCATGY 1 cut(s) 1052
PaeI GCATGC 1 cut(s) 1052
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 75
PctI GAATGC 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 323
PfeI GAWTC 4 cut(s) 221, 653, 749, 1084
PflFI GACNNNGTC 3 cut(s) 74, 379, 560
PkrI GCNGC 5 cut(s) 30, 33, 54, 194, 344
PleI GAGTC 5 cut(s) 247, 388, 670, 845, 856
PpsI GAGTC 5 cut(s) 247, 388, 670, 845, 856
Psp124BI GAGCTC 1 cut(s) 1008
Psp6I CCWGG 5 cut(s) 57, 436, 958, 988, 1079
PspGI CCWGG 5 cut(s) 57, 436, 958, 988, 1079
PspN4I GGNNCC 2 cut(s) 206, 435
PspPI GGNCC 2 cut(s) 270, 1077
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 3 cut(s) 74, 379, 560
RsaI GTAC 6 cut(s) 161, 263, 737, 785, 968, 1097
RsaNI GTAC 6 cut(s) 160, 262, 736, 784, 967, 1096
SacI GAGCTC 1 cut(s) 1008
SaqAI TTAA 2 cut(s) 516, 591
SatI GCNGC 5 cut(s) 29, 32, 53, 193, 343
Sau3AI GATC 4 cut(s) 44, 126, 481, 892
Sau96I GGNCC 2 cut(s) 270, 1077
ScaI AGTACT 2 cut(s) 785, 1097
SchI GAGTC 5 cut(s) 248, 389, 670, 846, 857
ScrFI CCNGG 8 cut(s) 59, 91, 274, 438, 506, 960, 990, 1081
SduI GDGCHC 2 cut(s) 447, 1008
SfaNI GCATC 1 cut(s) 837
SinI GGWCC 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 107, 485
SmoI CTYRAG 2 cut(s) 107, 485
SphI GCATGC 1 cut(s) 1052
Sse9I AATT 4 cut(s) 283, 550, 569, 909
SsiI CCGC 5 cut(s) 53, 192, 218, 342, 706
SspMI CTAG 1 cut(s) 624
SstI GAGCTC 1 cut(s) 1008
StyD4I CCNGG 8 cut(s) 57, 89, 272, 436, 504, 958, 988, 1079
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 2 cut(s) 513, 788
TaiI ACGT 3 cut(s) 11, 362, 1015
TaqI TCGA 4 cut(s) 287, 338, 496, 659
TasI AATT 4 cut(s) 283, 550, 569, 909
TatI WGTACW 3 cut(s) 783, 966, 1095
TauI GCSGC 3 cut(s) 55, 195, 345
TfiI GAWTC 4 cut(s) 221, 653, 749, 1084
Tru1I TTAA 2 cut(s) 516, 591
Tru9I TTAA 2 cut(s) 516, 591
TscAI CASTG 5 cut(s) 124, 260, 802, 838, 928
TseFI GTSAC 2 cut(s) 673, 788
TseI GCWGC 2 cut(s) 28, 31
Tsp45I GTSAC 2 cut(s) 673, 788
TspDTI ATGAA 5 cut(s) 645, 701, 704, 732, 969
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 5 cut(s) 124, 260, 802, 838, 928
Tth111I GACNNNGTC 3 cut(s) 74, 379, 560
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 1052
XspI CTAG 1 cut(s) 624
ZraI GACGTC 1 cut(s) 360
ZrmI AGTACT 2 cut(s) 785, 1097
Zsp2I ATGCAT 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.