Rorug02G0389600

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015984
Physical Location & Seq
Forward (+)
49718121 .. 49766289
48169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0389600.1

Sequence Viewer

Length: 813 bp
ATGGGGTCACAAACTCAGCCAGCTAAGGTTCCCATTGTAGATTTATCAAAAGAGAACTTGAAGCCTGGTACGGATGCATGGCTCTTGGCAAGCAAGGAAGTCAAGTATGCTCTAGAAGAGTATGGCTGCTTTGAAGCTATTTACAATAAAGTTCCTCTGGAACTTCACAACTCGACTTTTTCTTTGCTCGAAGACCTTTTCAATCTTCCCTTGGAAACTAAGATGCAGAACACCAGTGACAGGCCTTACCACAGCTATTTCGGACAATATTCCTTCCTTCCTCTCTACGAATCCCTGGGTGTCGATAACCCGACGACATTAGAAGGAGCTCAACGCTTCACAAGTATCATGTGGCCTGAAGGAAATGACGAGTTTCGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTCTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCGAGTCATGAAATATAAGGGCCCTCAAACCAGCGAGACTAAGCTGGGCCTAAACGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATTACAGGAAATGAGGCTAGGTACTCCACTGGATTGTTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCACGTCGAGTTTCTTGGATTTTACTATTCAGAGGCTGGTCAGAGAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

270

Amino Acids

30.86

Weight (kDa)

5.63

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 10 - 88 3.9e-10 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54180 AT1G54180
fragaria_vesca FvH4_6g34460 FvH4_6g34460
malus_domestica MD09G1186000.v1.1
prunus_persica Prupe.3G043800_v2.0.a1
pyrus_communis pycom09g10320
rosa_chinensis RchiOBHm_Chr2g0144791
rosa_laevigata RLG00000020113
rosa_multiflora Rmu_sc0002354.1_g000028
rosa_roxburghii Rroxscaffold_2G00100970
rosa_rugosa Rorug02G0389600
rosa_samantha Rh2AG441400 Rh2CG428700
rosa_wichuraiana Rw2G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 647
AccI GTMKAC 1 cut(s) 574
AclWI GGATC 1 cut(s) 426
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 70, 626
AfiI CCNNNNNNNGG 3 cut(s) 240, 656, 682
AgsI TTSAA 5 cut(s) 61, 134, 202, 715, 787
AhdI GACNNNNNGTC 1 cut(s) 570
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 3 cut(s) 64, 294, 468
AluBI AGCT 8 cut(s) 23, 137, 255, 329, 415, 450, 547, 773
AluI AGCT 8 cut(s) 23, 137, 255, 329, 415, 450, 547, 773
Alw21I GWGCWC 2 cut(s) 331, 775
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 4 cut(s) 242, 353, 523, 550
ApaI GGGCCC 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspS9I GGNCC 3 cut(s) 523, 524, 550
BaeGI GKGCMC 1 cut(s) 527
BanII GRGCYC 3 cut(s) 331, 527, 775
BbsI GAAGAC 2 cut(s) 198, 794
Bbv12I GWGCWC 2 cut(s) 331, 775
BbvI GCAGC 1 cut(s) 113
BciT130I CCWGG 3 cut(s) 66, 296, 470
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 3 cut(s) 113, 621, 811
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 66, 296, 470
BmeRI GACNNNNNGTC 1 cut(s) 570
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 3 cut(s) 523, 524, 550
BmiI GGNNCC 2 cut(s) 30, 525
BmrFI CCNGG 3 cut(s) 66, 296, 470
BmsI GCATC 3 cut(s) 64, 213, 709
BpiI GAAGAC 2 cut(s) 198, 794
BpmI CTGGAG 2 cut(s) 464, 491
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 210, 294, 295
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 656, 682
Bse1I ACTGG 2 cut(s) 234, 637
BseBI CCWGG 3 cut(s) 66, 296, 470
BseDI CCNNGG 3 cut(s) 210, 294, 295
BseGI GGATG 3 cut(s) 79, 697, 700
BseLI CCNNNNNNNGG 3 cut(s) 240, 656, 682
BseMII CTCAG 2 cut(s) 29, 402
BseNI ACTGG 2 cut(s) 234, 637
BseRI GAGGAG 1 cut(s) 695
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 547
BshFI GGCC 4 cut(s) 244, 355, 525, 552
BsiHKAI GWGCWC 2 cut(s) 331, 775
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 3 cut(s) 240, 656, 682
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 4 cut(s) 244, 355, 525, 552
Bsp120I GGGCCC 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 331, 527, 775
Bsp143I GATC 2 cut(s) 418, 724
BspANI GGCC 4 cut(s) 244, 355, 525, 552
BspCNI CTCAG 2 cut(s) 28, 403
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 30, 525
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 1 cut(s) 426
BspQI GCTCTTC 1 cut(s) 690
BsrI ACTGG 2 cut(s) 234, 637
BssECI CCNNGG 3 cut(s) 210, 294, 295
BssMI GATC 2 cut(s) 418, 724
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 66, 296, 470
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 2 cut(s) 111, 690
BstAPI GCANNNNNTGC 1 cut(s) 706
BstC8I GCNNGC 2 cut(s) 21, 91
BstDEI CTNAG 5 cut(s) 15, 24, 219, 411, 543
BstF5I GGATG 3 cut(s) 79, 697, 700
BstKTI GATC 2 cut(s) 421, 727
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 2 cut(s) 418, 724
BstMWI GCNNNNNNNGC 3 cut(s) 706, 715, 779
BstNI CCWGG 3 cut(s) 66, 296, 470
BstSCI CCNGG 3 cut(s) 64, 294, 468
BstSLI GKGCMC 1 cut(s) 527
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 2 cut(s) 198, 794
BsuRI GGCC 4 cut(s) 244, 355, 525, 552
BtrI CACGTC 1 cut(s) 730
BtsCI GGATG 3 cut(s) 79, 697, 700
BtsIMutI CAGTG 2 cut(s) 241, 630
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 21, 91
CaiI CAGNNNCTG 1 cut(s) 761
CciI TCATGA 1 cut(s) 510
Cfr13I GGNCC 3 cut(s) 523, 524, 550
Csp6I GTAC 2 cut(s) 69, 625
CviAII CATG 4 cut(s) 78, 349, 511, 561
CviQI GTAC 2 cut(s) 69, 625
DdeI CTNAG 5 cut(s) 15, 24, 219, 411, 543
DpnI GATC 2 cut(s) 420, 726
DpnII GATC 2 cut(s) 418, 724
DriI GACNNNNNGTC 1 cut(s) 570
Eam1104I CTCTTC 2 cut(s) 111, 690
Eam1105I GACNNNNNGTC 1 cut(s) 570
EarI CTCTTC 2 cut(s) 111, 690
Ecl136II GAGCTC 2 cut(s) 329, 773
Eco130I CCWWGG 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 244
Eco24I GRGCYC 3 cut(s) 331, 527, 775
Eco53kI GAGCTC 2 cut(s) 329, 773
Eco57I CTGAAG 1 cut(s) 378
EcoICRI GAGCTC 2 cut(s) 329, 773
EcoO109I RGGNCCY 2 cut(s) 523, 524
EcoRII CCWGG 3 cut(s) 64, 294, 468
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 3 cut(s) 331, 527, 775
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 81, 352, 514, 564
FaqI GGGAC 1 cut(s) 468
FatI CATG 4 cut(s) 77, 348, 510, 560
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 3 cut(s) 86, 687, 704
FriOI GRGCYC 3 cut(s) 331, 527, 775
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 3 cut(s) 113, 621, 811
GluI GCNGC 1 cut(s) 127
GsaI CCCAGC 1 cut(s) 551
GsuI CTGGAG 2 cut(s) 464, 491
HaeIII GGCC 4 cut(s) 244, 355, 525, 552
Hin1II CATG 4 cut(s) 81, 352, 514, 564
HincII GTYRAC 2 cut(s) 489, 575
HindII GTYRAC 2 cut(s) 489, 575
HinfI GANTC 3 cut(s) 290, 439, 507
Hpy166II GTNNAC 2 cut(s) 489, 575
Hpy188I TCNGA 5 cut(s) 263, 400, 412, 757, 768
Hpy188III TCNNGA 4 cut(s) 113, 158, 443, 511
Hpy8I GTNNAC 2 cut(s) 489, 575
Hpy99I CGWCG 2 cut(s) 316, 734
HpyAV CCTTC 6 cut(s) 283, 287, 317, 353, 403, 509
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 2 cut(s) 77, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 706, 715, 779
HpyF3I CTNAG 5 cut(s) 15, 24, 219, 411, 543
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 4 cut(s) 81, 352, 514, 564
Kzo9I GATC 2 cut(s) 418, 724
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 3 cut(s) 64, 213, 709
MaeI CTAG 3 cut(s) 113, 621, 811
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 3 cut(s) 6, 236, 659
MalI GATC 2 cut(s) 420, 726
MboI GATC 2 cut(s) 418, 724
MboII GAAGA 6 cut(s) 128, 197, 203, 494, 707, 799
MhlI GDGCHC 3 cut(s) 331, 527, 775
MluCI AATT 1 cut(s) 423
MlyI GAGTC 1 cut(s) 516
MnlI CCTC 9 cut(s) 165, 291, 466, 537, 610, 673, 676, 714, 751
Mph1103I ATGCAT 1 cut(s) 79
MspR9I CCNGG 3 cut(s) 66, 296, 470
MvaI CCWGG 3 cut(s) 66, 296, 470
MwoI GCNNNNNNNGC 3 cut(s) 706, 715, 779
NdeII GATC 2 cut(s) 418, 724
NlaIII CATG 4 cut(s) 81, 352, 514, 564
NlaIV GGNNCC 2 cut(s) 30, 525
NmuCI GTSAC 2 cut(s) 6, 236
NsiI ATGCAT 1 cut(s) 79
PagI TCATGA 1 cut(s) 510
PasI CCCWGGG 1 cut(s) 295
PceI AGGCCT 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 729
PfeI GAWTC 2 cut(s) 290, 439
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 2 cut(s) 331, 775
Psp6I CCWGG 3 cut(s) 64, 294, 468
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 3 cut(s) 64, 294, 468
PspN4I GGNNCC 2 cut(s) 30, 525
PspOMI GGGCCC 1 cut(s) 523
PspPI GGNCC 3 cut(s) 523, 524, 550
PstNI CAGNNNCTG 1 cut(s) 761
RsaI GTAC 2 cut(s) 70, 626
RsaNI GTAC 2 cut(s) 69, 625
SacI GAGCTC 2 cut(s) 331, 775
SalI GTCGAC 1 cut(s) 573
SapI GCTCTTC 1 cut(s) 690
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 418, 724
Sau96I GGNCC 3 cut(s) 523, 524, 550
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 3 cut(s) 66, 296, 470
SduI GDGCHC 3 cut(s) 331, 527, 775
SfaNI GCATC 3 cut(s) 64, 213, 709
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 1 cut(s) 423
SseBI AGGCCT 1 cut(s) 244
SspI AATATT 1 cut(s) 269
SspMI CTAG 3 cut(s) 113, 621, 811
SstI GAGCTC 2 cut(s) 331, 775
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 3 cut(s) 64, 294, 468
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 732
TaqI TCGA 8 cut(s) 173, 189, 303, 505, 574, 595, 723, 732
TasI AATT 1 cut(s) 423
TfiI GAWTC 2 cut(s) 290, 439
TscAI CASTG 2 cut(s) 241, 637
TseFI GTSAC 2 cut(s) 6, 236
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 2 cut(s) 6, 236
TspDTI ATGAA 3 cut(s) 377, 527, 708
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 2 cut(s) 241, 637
XbaI TCTAGA 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 3 cut(s) 113, 621, 811
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.