RLG00000020113

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015984
Physical Location & Seq
Forward (+)
61114392 .. 61117324
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020113

Sequence Viewer

Length: 1104 bp
ATGCTGACGTGTATTTCCTGCTCTTCCAAGCAGCTCAACAATGGATCTCTGCCGCACCAGGATGATGACGACGGCGTTGTCGCCACTCCGAGGACGAAGCAAGCTCTCAAGGCCCTCACTGCTCAGATCAAGGATATGGCATTGAAGGCCTCGGGAGCCTACAAGAACTGCAAGCCGTGTTCGAGGCCGTGCGGGGATCACCGGAACCGTAACTGTGCGGATTCCGATACGGCGTCGGAGTCGGCGAAGTTCCGCTGCTCGTACCGGAGAACCGGGAGCTCGAATTCGACGCCGAGGCTGTGGGGGAAGGAGATGGAGAGCAGGCTGAAGGCGCTTTCGAGCGGCGAAGGGACGCCGGCGTCGGTGAGTGGGAGGACCGAGTCTGTGGTGTTGATGGAGGATGATGAGCCTAAGGAATGGGAAGCGCAAGTGGAGCCTGGTGTGCTCATCACATTTGTTTCTCTGCCCCAAGGAGGAAATGATCTGAAACGCATTCGATTCAGCCGGGAACTGTTTAACAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAATTATACAATGTGCAAAGGTTCAATCACCAAGAAGTCCCACTTCCAATCCCACCTAGAGATGAAGATGAGAGTTCAAAGGTTGAATCTTCTAGGGAAAGTCCTGTGACTCCCCCGATGAGCAAAGAACGCCTGCCCCGCAACTTCCACCGGCCAATGGGCGTGGGGTACTCTTCATCAGATTCACTTTATCACCATCCAATGCAATCCCGTCACTACTGTGACACCAGTGGTTTAGCTTCAACACCTAAACTTTCCAACATAAGTGGAGTCAAAACTGAGTCGTCATCAATAGATGGTTCTATAAGGAGTAGTTCAGAGGCAGATCGCTCAGAGGTTTCAATTAGCAACGCCAGCGATATGGAGACTGAATGGGTTGAGCAGGATGAACCAGGAGTGTACATCACTATCAGAGCATTGCCAGGTGGTGGTCGGGAGCTCAGACGTGTCCGGTTCAGCCGAGAAAAGTTTGGTGAAATGCATGCGAGATTGTGGTGGGAAGAGAATAGGGCCAGGATTCAGGAGCAGTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

368

Amino Acids

41.4

Weight (kDa)

6.73

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 28 - 60 4.5e-15 Transcription factor BRX N-terminal domain
BRX PF08381 138 - 192 1.5e-24 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 311 - 366 5.3e-28 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54180 AT1G54180
fragaria_vesca FvH4_6g34460 FvH4_6g34460
malus_domestica MD09G1186000.v1.1
prunus_persica Prupe.3G043800_v2.0.a1
pyrus_communis pycom09g10320
rosa_chinensis RchiOBHm_Chr2g0144791
rosa_laevigata RLG00000020113
rosa_multiflora Rmu_sc0002354.1_g000028
rosa_roxburghii Rroxscaffold_2G00100970
rosa_rugosa Rorug02G0389600
rosa_samantha Rh2AG441400 Rh2CG428700
rosa_wichuraiana Rw2G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 77, 358
AccB7I CCANNNNNTGG 1 cut(s) 995
AccBSI CCGCTC 1 cut(s) 342
AciI CCGC 6 cut(s) 53, 192, 218, 253, 342, 706
AclWI GGATC 2 cut(s) 52, 204
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 4 cut(s) 233, 290, 353, 359
AfaI GTAC 4 cut(s) 263, 737, 968, 1097
AfiI CCNNNNNNNGG 4 cut(s) 90, 473, 724, 995
AflIII ACRYGT 2 cut(s) 8, 1012
AgsI TTSAA 6 cut(s) 145, 592, 645, 653, 810, 909
AjiI CACGTC 2 cut(s) 9, 1013
AjnI CCWGG 5 cut(s) 57, 436, 958, 988, 1079
AleI CACNNNNGTG 1 cut(s) 786
AluBI AGCT 6 cut(s) 34, 104, 279, 530, 806, 1006
AluI AGCT 6 cut(s) 34, 104, 279, 530, 806, 1006
Alw21I GWGCWC 3 cut(s) 281, 447, 1008
Alw26I GTCTC 1 cut(s) 926
AlwI GGATC 2 cut(s) 52, 204
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 5 cut(s) 111, 147, 185, 719, 1077
ApeKI GCWGC 2 cut(s) 31, 255
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 2 cut(s) 334, 427
AspS9I GGNCC 3 cut(s) 112, 375, 1077
AsuC2I CCSGG 2 cut(s) 274, 506
AsuHPI GGTGA 5 cut(s) 191, 376, 587, 752, 1052
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 1 cut(s) 375
AxyI CCTNAGG 1 cut(s) 411
BanII GRGCYC 2 cut(s) 281, 1008
Bbv12I GWGCWC 3 cut(s) 281, 447, 1008
BbvI GCAGC 2 cut(s) 43, 242
BccI CCATC 4 cut(s) 307, 388, 771, 857
BceAI ACGGC 4 cut(s) 88, 160, 172, 246
BciT130I CCWGG 5 cut(s) 59, 438, 960, 990, 1081
BcnI CCSGG 2 cut(s) 274, 506
BcoDI GTCTC 1 cut(s) 926
BfaI CTAG 2 cut(s) 624, 660
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 4 cut(s) 32, 53, 256, 343
BlsI GCNGC 4 cut(s) 33, 54, 257, 344
BmcAI AGTACT 1 cut(s) 1097
Bme1390I CCNGG 7 cut(s) 59, 274, 438, 506, 960, 990, 1081
Bme18I GGWCC 1 cut(s) 375
BmeT110I CYCGRG 1 cut(s) 151
BmgBI CACGTC 2 cut(s) 9, 1013
BmgT120I GGNCC 3 cut(s) 112, 375, 1077
BmiI GGNNCC 3 cut(s) 157, 206, 435
BmrFI CCNGG 7 cut(s) 59, 274, 438, 506, 960, 990, 1081
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 274, 506
BsaHI GRCGYC 4 cut(s) 233, 290, 353, 359
BsaJI CCNNGG 4 cut(s) 89, 150, 293, 469
BsaWI WCCGGW 3 cut(s) 201, 264, 1017
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 473, 724, 995
Bse118I RCCGGY 2 cut(s) 355, 717
Bse1I ACTGG 1 cut(s) 795
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 983
BseBI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
BseDI CCNNGG 4 cut(s) 89, 150, 293, 469
BseGI GGATG 4 cut(s) 67, 406, 763, 958
BseLI CCNNNNNNNGG 4 cut(s) 90, 473, 724, 995
BseMI GCAATG 1 cut(s) 983
BseMII CTCAG 5 cut(s) 137, 545, 837, 912, 1021
BseNI ACTGG 1 cut(s) 795
BseXI GCAGC 2 cut(s) 43, 242
BshFI GGCC 5 cut(s) 113, 149, 187, 721, 1079
BsiHKAI GWGCWC 3 cut(s) 281, 447, 1008
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 7 cut(s) 202, 265, 273, 356, 505, 718, 1018
BslFI GGGAC 2 cut(s) 364, 590
BslI CCNNNNNNNGG 4 cut(s) 90, 473, 724, 995
BsmAI GTCTC 1 cut(s) 926
BsmFI GGGAC 2 cut(s) 364, 590
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 5 cut(s) 113, 149, 187, 721, 1079
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 3 cut(s) 281, 447, 1008
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 5 cut(s) 44, 126, 196, 481, 892
BspACI CCGC 6 cut(s) 53, 192, 218, 253, 342, 706
BspANI GGCC 5 cut(s) 113, 149, 187, 721, 1079
BspCNI CTCAG 5 cut(s) 136, 544, 838, 911, 1020
BspLI GGNNCC 3 cut(s) 157, 206, 435
BspPI GGATC 2 cut(s) 52, 204
BspQI GCTCTTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 983
BsrFI RCCGGY 2 cut(s) 355, 717
BsrGI TGTACA 1 cut(s) 966
BsrI ACTGG 1 cut(s) 795
BssAI RCCGGY 2 cut(s) 355, 717
BssECI CCNNGG 4 cut(s) 89, 150, 293, 469
BssMI GATC 5 cut(s) 44, 126, 196, 481, 892
BssNI GRCGYC 4 cut(s) 233, 290, 353, 359
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
Bst4CI ACNGT 4 cut(s) 209, 215, 513, 788
Bst6I CTCTTC 3 cut(s) 28, 745, 1062
BstACI GRCGYC 4 cut(s) 233, 290, 353, 359
BstAUI TGTACA 1 cut(s) 966
BstC8I GCNNGC 8 cut(s) 102, 173, 323, 357, 528, 701, 922, 1050
BstDEI CTNAG 6 cut(s) 123, 411, 531, 846, 898, 1007
BstF5I GGATG 4 cut(s) 67, 406, 763, 958
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 2 cut(s) 334, 427
BstKTI GATC 5 cut(s) 47, 129, 199, 484, 895
BstMAI GTCTC 1 cut(s) 926
BstMBI GATC 5 cut(s) 44, 126, 196, 481, 892
BstNI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 7 cut(s) 57, 272, 436, 504, 958, 988, 1079
BstV1I GCAGC 2 cut(s) 43, 242
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 928
BstYI RGATCY 1 cut(s) 44
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 5 cut(s) 113, 149, 187, 721, 1079
BtrI CACGTC 2 cut(s) 9, 1013
BtsCI GGATG 4 cut(s) 67, 406, 763, 958
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 117, 802
Cac8I GCNNGC 8 cut(s) 102, 173, 323, 357, 528, 701, 922, 1050
CfoI GCGC 2 cut(s) 334, 427
Cfr10I RCCGGY 2 cut(s) 355, 717
Cfr13I GGNCC 3 cut(s) 112, 375, 1077
CseI GACGC 4 cut(s) 222, 298, 348, 361
Csp6I GTAC 4 cut(s) 262, 736, 967, 1096
CspCI CAANNNNNGTGG 4 cut(s) 711, 746, 814, 849
CviAII CATG 2 cut(s) 565, 1049
CviQI GTAC 4 cut(s) 262, 736, 967, 1096
DdeI CTNAG 6 cut(s) 123, 411, 531, 846, 898, 1007
DpnI GATC 5 cut(s) 46, 128, 198, 483, 894
DpnII GATC 5 cut(s) 44, 126, 196, 481, 892
DrdI GACNNNNNNGTC 2 cut(s) 77, 358
DseDI GACNNNNNNGTC 2 cut(s) 77, 358
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 3 cut(s) 28, 745, 1062
EarI CTCTTC 3 cut(s) 28, 745, 1062
Ecl136II GAGCTC 2 cut(s) 279, 1006
Eco130I CCWWGG 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 281, 1008
Eco47I GGWCC 1 cut(s) 375
Eco53kI GAGCTC 2 cut(s) 279, 1006
Eco57I CTGAAG 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 2 cut(s) 279, 1006
EcoO109I RGGNCCY 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 5 cut(s) 57, 436, 958, 988, 1079
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 1050
EcoT38I GRGCYC 2 cut(s) 281, 1008
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 568, 1052
FaiI YATR 9 cut(s) 137, 555, 566, 574, 830, 872, 929, 1050, 1102
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 364, 590
FatI CATG 2 cut(s) 564, 1048
FauI CCCGC 2 cut(s) 185, 713
Fnu4HI GCNGC 4 cut(s) 32, 53, 256, 343
FokI GGATG 4 cut(s) 74, 413, 750, 965
FriOI GRGCYC 2 cut(s) 281, 1008
Fsp4HI GCNGC 4 cut(s) 32, 53, 256, 343
FspBI CTAG 2 cut(s) 624, 660
GlaI GCGC 2 cut(s) 333, 426
GluI GCNGC 4 cut(s) 32, 53, 256, 343
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 5 cut(s) 113, 149, 187, 721, 1079
HapII CCGG 7 cut(s) 202, 265, 273, 356, 505, 718, 1018
HgaI GACGC 4 cut(s) 222, 298, 348, 361
HhaI GCGC 2 cut(s) 334, 427
Hin1I GRCGYC 4 cut(s) 233, 290, 353, 359
Hin1II CATG 2 cut(s) 568, 1052
Hin6I GCGC 2 cut(s) 332, 425
HinP1I GCGC 2 cut(s) 332, 425
HpaII CCGG 7 cut(s) 202, 265, 273, 356, 505, 718, 1018
HphI GGTGA 5 cut(s) 191, 376, 587, 752, 1052
Hpy166II GTNNAC 1 cut(s) 967
Hpy188III TCNNGA 3 cut(s) 153, 1001, 1088
Hpy8I GTNNAC 1 cut(s) 967
Hpy99I CGWCG 4 cut(s) 74, 238, 292, 364
HpyAV CCTTC 4 cut(s) 139, 301, 322, 341
HpyCH4III ACNGT 4 cut(s) 209, 215, 513, 788
HpyCH4IV ACGT 2 cut(s) 8, 1012
HpyCH4V TGCA 4 cut(s) 171, 583, 772, 1048
HpyF3I CTNAG 6 cut(s) 123, 411, 531, 846, 898, 1007
HpySE526I ACGT 2 cut(s) 8, 1012
Hsp92I GRCGYC 4 cut(s) 233, 290, 353, 359
Hsp92II CATG 2 cut(s) 568, 1052
HspAI GCGC 2 cut(s) 332, 425
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 5 cut(s) 44, 126, 196, 481, 892
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 5 cut(s) 155, 276, 433, 1003, 1090
Lsp1109I GCAGC 2 cut(s) 43, 242
MaeI CTAG 2 cut(s) 624, 660
MaeII ACGT 2 cut(s) 8, 1012
MaeIII GTNAC 4 cut(s) 209, 673, 779, 788
MalI GATC 5 cut(s) 46, 128, 198, 483, 894
MbiI CCGCTC 1 cut(s) 342
MboI GATC 5 cut(s) 44, 126, 196, 481, 892
MboII GAAGA 5 cut(s) 15, 644, 648, 732, 1079
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 3 cut(s) 281, 447, 1008
MluCI AATT 4 cut(s) 283, 550, 569, 909
MlyI GAGTC 5 cut(s) 248, 389, 670, 846, 857
MmeI TCCRAC 2 cut(s) 216, 849
Mph1103I ATGCAT 1 cut(s) 1050
MreI CGCCGGCG 1 cut(s) 355
MroNI GCCGGC 1 cut(s) 355
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 2 cut(s) 60, 786
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 7 cut(s) 202, 265, 273, 356, 505, 718, 1018
MspR9I CCNGG 7 cut(s) 59, 274, 438, 506, 960, 990, 1081
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 5 cut(s) 59, 438, 960, 990, 1081
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 2 cut(s) 274, 506
NdeII GATC 5 cut(s) 44, 126, 196, 481, 892
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 568, 1052
NlaIV GGNNCC 3 cut(s) 157, 206, 435
NmeAIII GCCGAG 2 cut(s) 318, 1052
NmuCI GTSAC 3 cut(s) 673, 779, 788
NsiI ATGCAT 1 cut(s) 1050
NspI RCATGY 1 cut(s) 1052
OliI CACNNNNGTG 1 cut(s) 786
PaeI GCATGC 1 cut(s) 1052
PceI AGGCCT 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PctI GAATGC 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 5 cut(s) 221, 498, 653, 749, 1084
PflFI GACNNNGTC 2 cut(s) 379, 560
PflMI CCANNNNNTGG 1 cut(s) 995
PkrI GCNGC 4 cut(s) 33, 54, 257, 344
PleI GAGTC 5 cut(s) 247, 388, 670, 845, 856
PpsI GAGTC 5 cut(s) 247, 388, 670, 845, 856
Psp124BI GAGCTC 2 cut(s) 281, 1008
Psp6I CCWGG 5 cut(s) 57, 436, 958, 988, 1079
PspGI CCWGG 5 cut(s) 57, 436, 958, 988, 1079
PspN4I GGNNCC 3 cut(s) 157, 206, 435
PspPI GGNCC 3 cut(s) 112, 375, 1077
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 2 cut(s) 379, 560
RsaI GTAC 4 cut(s) 263, 737, 968, 1097
RsaNI GTAC 4 cut(s) 262, 736, 967, 1096
RseI CAYNNNNRTG 2 cut(s) 60, 786
SacI GAGCTC 2 cut(s) 281, 1008
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 4 cut(s) 32, 53, 256, 343
Sau3AI GATC 5 cut(s) 44, 126, 196, 481, 892
Sau96I GGNCC 3 cut(s) 112, 375, 1077
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 5 cut(s) 248, 389, 670, 846, 857
ScrFI CCNGG 7 cut(s) 59, 274, 438, 506, 960, 990, 1081
SduI GDGCHC 3 cut(s) 281, 447, 1008
SgrAI CRCCGGYG 1 cut(s) 355
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 2 cut(s) 60, 786
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SphI GCATGC 1 cut(s) 1052
Sse9I AATT 4 cut(s) 283, 550, 569, 909
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 6 cut(s) 53, 192, 218, 253, 342, 706
SspMI CTAG 2 cut(s) 624, 660
SstI GAGCTC 2 cut(s) 281, 1008
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 7 cut(s) 57, 272, 436, 504, 958, 988, 1079
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 4 cut(s) 209, 215, 513, 788
TaiI ACGT 2 cut(s) 11, 1015
TaqI TCGA 5 cut(s) 182, 281, 287, 338, 496
TaqII GACCGA 1 cut(s) 392
TasI AATT 4 cut(s) 283, 550, 569, 909
TatI WGTACW 2 cut(s) 966, 1095
TauI GCSGC 2 cut(s) 55, 345
TfiI GAWTC 5 cut(s) 221, 498, 653, 749, 1084
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 2 cut(s) 124, 802
TseFI GTSAC 3 cut(s) 673, 779, 788
TseI GCWGC 2 cut(s) 31, 255
Tsp45I GTSAC 3 cut(s) 673, 779, 788
TspDTI ATGAA 3 cut(s) 645, 732, 969
TspRI CASTG 2 cut(s) 124, 802
Tth111I GACNNNGTC 2 cut(s) 379, 560
Van91I CCANNNNNTGG 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 375
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 1052
XspI CTAG 2 cut(s) 624, 660
ZrmI AGTACT 1 cut(s) 1097
Zsp2I ATGCAT 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.