Rroxscaffold_2G00100970

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015984
Physical Location & Seq
Reverse (-)
22951675 .. 22955170
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100970.1

Sequence Viewer

Length: 1098 bp
ATGCTGACGTGTATTTCCTGCTCCTCCAAGCAGCTCAACAATGGATCTCTGCCGCACCAGGATGACGACGACGGCGTTGTCGCCACTCCGAGAACGAAGCAAGCTCTCAAGGCCCTTACTGCTCAGATCAAGGATATGGCATTGAAGGCCTCGGGAGCCTACAAGAACTGCAAGCCGTGTTCGAGGCCGTGCGGCGACCACCGCAACCGGAACTGTGCGGATTCCGATACGGCGTCGGAGTCGGCGAAGTTCCACTGCTCGTACCGGAGAACCGGGAGCTCGAATTCCACGCCGAGGCTGTGGGGGAAGGAGATGGAGAGCAGGCTGAAGGCGCTTTCGAGCGGCGAAGGGACGCCGGCGTCGGTGAGTGGGAGGACTGAGTCTGTGGTGTTGATGGAGGATGATGAGCCTAAGGAATGGGAAGCGCAAGTGGAGCCTGGTGTGCTCATCACTTTTGTTTCTCTGCCCCAAGGGGGAAATGATCTGAAGCGCATTCGATTCAGCCGGGAACTGTTTAACAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAATTATACAATGTGCAAAGGTTCAATCACCAAGAAGTCCCACTTCCAACCCCACCTAGAGATGAAGATGAGAATTCAAAGGTTGAATCTTCTAGGGAAAGTCCCGTGACTCCCCCGATGAGCAAAGAACGCCTGCCCCGCAACTTCCACCGGCCAATGGGGTACGCTTCATCAGATTCACTTGATCACCATCCAATGCAATCCCGTCACTACTGTGACACCAGTGGTTTAGCTTCAACACCTAAACTTTCCAGCATAAGTGGAGTCAAAACTGAGTCGTCATCAATAGATGGTTCTATAAGGAGTAGTTCAGAGGCAGATCGCTCAGAGGTTTCAATTAGCAACGCCAGCGATATGGAGACTGAATGGGTTGAGCAGGATGAACCAGGAGTGTACATCACTATCAGAGCATTGCCAGGTGGTGGTCGGGAGCTCAGACGTGTCCGGTTCAGCCGAGAAAAGTTTGGTGAAATGCATGCGAGATTGTGGTGGGAAGAGAATAGGGCCAGGATTCAGGAGCAGTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

365

Amino Acids

41.15

Weight (kDa)

6.35

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 28 - 60 4.4e-15 Transcription factor BRX N-terminal domain
BRX PF08381 138 - 192 1.5e-24 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 309 - 364 5.3e-28 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54180 AT1G54180
fragaria_vesca FvH4_6g34460 FvH4_6g34460
malus_domestica MD09G1186000.v1.1
prunus_persica Prupe.3G043800_v2.0.a1
pyrus_communis pycom09g10320
rosa_chinensis RchiOBHm_Chr2g0144791
rosa_laevigata RLG00000020113
rosa_multiflora Rmu_sc0002354.1_g000028
rosa_roxburghii Rroxscaffold_2G00100970
rosa_rugosa Rorug02G0389600
rosa_samantha Rh2AG441400 Rh2CG428700
rosa_wichuraiana Rw2G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 77, 358
AccB7I CCANNNNNTGG 1 cut(s) 989
AccBSI CCGCTC 1 cut(s) 342
AciI CCGC 6 cut(s) 53, 192, 202, 218, 342, 706
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 2 cut(s) 283, 640
AcuI CTGAAG 2 cut(s) 347, 506
AcyI GRCGYC 3 cut(s) 233, 353, 359
AfaI GTAC 4 cut(s) 263, 731, 962, 1091
AfiI CCNNNNNNNGG 4 cut(s) 294, 473, 724, 989
AflIII ACRYGT 2 cut(s) 8, 1006
AgsI TTSAA 6 cut(s) 145, 592, 645, 653, 804, 903
AjiI CACGTC 2 cut(s) 9, 1007
AjnI CCWGG 5 cut(s) 57, 436, 952, 982, 1073
AleI CACNNNNGTG 1 cut(s) 780
AluBI AGCT 6 cut(s) 34, 104, 279, 530, 800, 1000
AluI AGCT 6 cut(s) 34, 104, 279, 530, 800, 1000
Alw21I GWGCWC 3 cut(s) 281, 447, 1002
Alw26I GTCTC 1 cut(s) 920
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 5 cut(s) 111, 147, 185, 719, 1071
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 2 cut(s) 283, 640
AspLEI GCGC 3 cut(s) 334, 427, 492
AspS9I GGNCC 2 cut(s) 112, 1071
AsuC2I CCSGG 2 cut(s) 274, 506
AsuHPI GGTGA 4 cut(s) 376, 587, 746, 1046
AvaI CYCGRG 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 411
BanII GRGCYC 2 cut(s) 281, 1002
Bbv12I GWGCWC 3 cut(s) 281, 447, 1002
BbvI GCAGC 1 cut(s) 43
BccI CCATC 4 cut(s) 307, 388, 765, 851
BceAI ACGGC 4 cut(s) 88, 160, 172, 246
BciT130I CCWGG 5 cut(s) 59, 438, 954, 984, 1075
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 2 cut(s) 274, 506
BcoDI GTCTC 1 cut(s) 920
BfaI CTAG 2 cut(s) 624, 660
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 4 cut(s) 32, 53, 193, 343
BlsI GCNGC 4 cut(s) 33, 54, 194, 344
BmcAI AGTACT 1 cut(s) 1091
Bme1390I CCNGG 7 cut(s) 59, 274, 438, 506, 954, 984, 1075
BmeT110I CYCGRG 1 cut(s) 151
BmgBI CACGTC 2 cut(s) 9, 1007
BmgT120I GGNCC 2 cut(s) 112, 1071
BmiI GGNNCC 2 cut(s) 157, 435
BmrFI CCNGG 7 cut(s) 59, 274, 438, 506, 954, 984, 1075
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 274, 506
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 3 cut(s) 233, 353, 359
BsaJI CCNNGG 3 cut(s) 150, 293, 469
BsaWI WCCGGW 3 cut(s) 207, 264, 1011
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 473, 724, 989
Bse118I RCCGGY 2 cut(s) 355, 717
Bse1I ACTGG 1 cut(s) 789
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 977
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 5 cut(s) 59, 438, 954, 984, 1075
BseDI CCNNGG 3 cut(s) 150, 293, 469
BseGI GGATG 4 cut(s) 67, 406, 757, 952
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 4 cut(s) 294, 473, 724, 989
BseMI GCAATG 1 cut(s) 977
BseMII CTCAG 6 cut(s) 137, 369, 545, 831, 906, 1015
BseNI ACTGG 1 cut(s) 789
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 5 cut(s) 113, 149, 187, 721, 1073
BsiHKAI GWGCWC 3 cut(s) 281, 447, 1002
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 7 cut(s) 208, 265, 273, 356, 505, 718, 1012
BslFI GGGAC 3 cut(s) 364, 590, 654
BslI CCNNNNNNNGG 4 cut(s) 294, 473, 724, 989
BsmAI GTCTC 1 cut(s) 920
BsmFI GGGAC 3 cut(s) 364, 590, 654
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 5 cut(s) 113, 149, 187, 721, 1073
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 3 cut(s) 281, 447, 1002
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 5 cut(s) 44, 126, 481, 751, 886
BspACI CCGC 6 cut(s) 53, 192, 202, 218, 342, 706
BspANI GGCC 5 cut(s) 113, 149, 187, 721, 1073
BspCNI CTCAG 6 cut(s) 136, 370, 544, 832, 905, 1014
BspLI GGNNCC 2 cut(s) 157, 435
BspPI GGATC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 977
BsrFI RCCGGY 2 cut(s) 355, 717
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 1 cut(s) 789
BssAI RCCGGY 2 cut(s) 355, 717
BssECI CCNNGG 3 cut(s) 150, 293, 469
BssMI GATC 5 cut(s) 44, 126, 481, 751, 886
BssNI GRCGYC 3 cut(s) 233, 353, 359
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 5 cut(s) 59, 438, 954, 984, 1075
Bst4CI ACNGT 3 cut(s) 215, 513, 782
Bst6I CTCTTC 1 cut(s) 1056
BstACI GRCGYC 3 cut(s) 233, 353, 359
BstAUI TGTACA 1 cut(s) 960
BstC8I GCNNGC 8 cut(s) 102, 173, 323, 357, 528, 701, 916, 1044
BstDEI CTNAG 7 cut(s) 123, 378, 411, 531, 840, 892, 1001
BstF5I GGATG 4 cut(s) 67, 406, 757, 952
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 3 cut(s) 334, 427, 492
BstKTI GATC 5 cut(s) 47, 129, 484, 754, 889
BstMAI GTCTC 1 cut(s) 920
BstMBI GATC 5 cut(s) 44, 126, 481, 751, 886
BstNI CCWGG 5 cut(s) 59, 438, 954, 984, 1075
BstNSI RCATGY 1 cut(s) 1046
BstSCI CCNGG 7 cut(s) 57, 272, 436, 504, 952, 982, 1073
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 922
BstYI RGATCY 1 cut(s) 44
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 5 cut(s) 113, 149, 187, 721, 1073
BtrI CACGTC 2 cut(s) 9, 1007
BtsCI GGATG 4 cut(s) 67, 406, 757, 952
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 796
Cac8I GCNNGC 8 cut(s) 102, 173, 323, 357, 528, 701, 916, 1044
CfoI GCGC 3 cut(s) 334, 427, 492
Cfr10I RCCGGY 2 cut(s) 355, 717
Cfr13I GGNCC 2 cut(s) 112, 1071
CseI GACGC 3 cut(s) 222, 348, 361
Csp6I GTAC 4 cut(s) 262, 730, 961, 1090
CviAII CATG 2 cut(s) 565, 1043
CviQI GTAC 4 cut(s) 262, 730, 961, 1090
DdeI CTNAG 7 cut(s) 123, 378, 411, 531, 840, 892, 1001
DpnI GATC 5 cut(s) 46, 128, 483, 753, 888
DpnII GATC 5 cut(s) 44, 126, 481, 751, 886
DrdI GACNNNNNNGTC 2 cut(s) 77, 358
DseDI GACNNNNNNGTC 2 cut(s) 77, 358
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 1056
EarI CTCTTC 1 cut(s) 1056
Ecl136II GAGCTC 2 cut(s) 279, 1000
Eco130I CCWWGG 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 281, 1002
Eco53kI GAGCTC 2 cut(s) 279, 1000
Eco57I CTGAAG 2 cut(s) 347, 506
Eco81I CCTNAGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 2 cut(s) 279, 1000
EcoO109I RGGNCCY 1 cut(s) 112
EcoRI GAATTC 2 cut(s) 283, 640
EcoRII CCWGG 5 cut(s) 57, 436, 952, 982, 1073
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 1044
EcoT38I GRGCYC 2 cut(s) 281, 1002
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 568, 1046
FaiI YATR 9 cut(s) 137, 555, 566, 574, 824, 866, 923, 1044, 1096
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 3 cut(s) 364, 590, 654
FatI CATG 2 cut(s) 564, 1042
FauI CCCGC 1 cut(s) 713
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 4 cut(s) 32, 53, 193, 343
FokI GGATG 4 cut(s) 74, 413, 744, 959
FriOI GRGCYC 2 cut(s) 281, 1002
Fsp4HI GCNGC 4 cut(s) 32, 53, 193, 343
FspBI CTAG 2 cut(s) 624, 660
GlaI GCGC 3 cut(s) 333, 426, 491
GluI GCNGC 4 cut(s) 32, 53, 193, 343
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 5 cut(s) 113, 149, 187, 721, 1073
HapII CCGG 7 cut(s) 208, 265, 273, 356, 505, 718, 1012
HgaI GACGC 3 cut(s) 222, 348, 361
HhaI GCGC 3 cut(s) 334, 427, 492
Hin1I GRCGYC 3 cut(s) 233, 353, 359
Hin1II CATG 2 cut(s) 568, 1046
Hin6I GCGC 3 cut(s) 332, 425, 490
HinP1I GCGC 3 cut(s) 332, 425, 490
HpaII CCGG 7 cut(s) 208, 265, 273, 356, 505, 718, 1012
HphI GGTGA 4 cut(s) 376, 587, 746, 1046
Hpy166II GTNNAC 1 cut(s) 961
Hpy188III TCNNGA 3 cut(s) 153, 995, 1082
Hpy8I GTNNAC 1 cut(s) 961
Hpy99I CGWCG 4 cut(s) 71, 74, 238, 364
HpyAV CCTTC 4 cut(s) 139, 301, 322, 341
HpyCH4III ACNGT 3 cut(s) 215, 513, 782
HpyCH4IV ACGT 2 cut(s) 8, 1006
HpyCH4V TGCA 4 cut(s) 171, 583, 766, 1042
HpyF3I CTNAG 7 cut(s) 123, 378, 411, 531, 840, 892, 1001
HpySE526I ACGT 2 cut(s) 8, 1006
Hsp92I GRCGYC 3 cut(s) 233, 353, 359
Hsp92II CATG 2 cut(s) 568, 1046
HspAI GCGC 3 cut(s) 332, 425, 490
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 5 cut(s) 44, 126, 481, 751, 886
LmnI GCTCC 6 cut(s) 26, 155, 276, 433, 997, 1084
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 2 cut(s) 624, 660
MaeII ACGT 2 cut(s) 8, 1006
MaeIII GTNAC 3 cut(s) 673, 773, 782
MalI GATC 5 cut(s) 46, 128, 483, 753, 888
MbiI CCGCTC 1 cut(s) 342
MboI GATC 5 cut(s) 44, 126, 481, 751, 886
MboII GAAGA 3 cut(s) 644, 648, 1073
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 3 cut(s) 281, 447, 1002
MluCI AATT 5 cut(s) 283, 550, 569, 640, 903
MlyI GAGTC 5 cut(s) 248, 389, 670, 840, 851
MmeI TCCRAC 2 cut(s) 216, 638
MnlI CCTC 9 cut(s) 34, 160, 177, 288, 366, 391, 528, 874, 889
Mph1103I ATGCAT 1 cut(s) 1044
MreI CGCCGGCG 1 cut(s) 355
MroNI GCCGGC 1 cut(s) 355
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 2 cut(s) 60, 780
MspI CCGG 7 cut(s) 208, 265, 273, 356, 505, 718, 1012
MspR9I CCNGG 7 cut(s) 59, 274, 438, 506, 954, 984, 1075
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 5 cut(s) 59, 438, 954, 984, 1075
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 2 cut(s) 274, 506
NdeII GATC 5 cut(s) 44, 126, 481, 751, 886
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 568, 1046
NlaIV GGNNCC 2 cut(s) 157, 435
NmeAIII GCCGAG 2 cut(s) 318, 1046
NmuCI GTSAC 3 cut(s) 673, 773, 782
NsiI ATGCAT 1 cut(s) 1044
NspI RCATGY 1 cut(s) 1046
OliI CACNNNNGTG 1 cut(s) 780
PaeI GCATGC 1 cut(s) 1046
PceI AGGCCT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 242
PctI GAATGC 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 5 cut(s) 221, 498, 653, 743, 1078
PflFI GACNNNGTC 2 cut(s) 379, 560
PflMI CCANNNNNTGG 1 cut(s) 989
PkrI GCNGC 4 cut(s) 33, 54, 194, 344
PleI GAGTC 5 cut(s) 247, 388, 670, 839, 850
PpsI GAGTC 5 cut(s) 247, 388, 670, 839, 850
Psp124BI GAGCTC 2 cut(s) 281, 1002
Psp6I CCWGG 5 cut(s) 57, 436, 952, 982, 1073
PspGI CCWGG 5 cut(s) 57, 436, 952, 982, 1073
PspN4I GGNNCC 2 cut(s) 157, 435
PspPI GGNCC 2 cut(s) 112, 1071
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 2 cut(s) 379, 560
RsaI GTAC 4 cut(s) 263, 731, 962, 1091
RsaNI GTAC 4 cut(s) 262, 730, 961, 1090
RseI CAYNNNNRTG 2 cut(s) 60, 780
SacI GAGCTC 2 cut(s) 281, 1002
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 4 cut(s) 32, 53, 193, 343
Sau3AI GATC 5 cut(s) 44, 126, 481, 751, 886
Sau96I GGNCC 2 cut(s) 112, 1071
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 5 cut(s) 248, 389, 670, 840, 851
ScrFI CCNGG 7 cut(s) 59, 274, 438, 506, 954, 984, 1075
SduI GDGCHC 3 cut(s) 281, 447, 1002
SgrAI CRCCGGYG 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 60, 780
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SphI GCATGC 1 cut(s) 1046
Sse9I AATT 5 cut(s) 283, 550, 569, 640, 903
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 6 cut(s) 53, 192, 202, 218, 342, 706
SspMI CTAG 2 cut(s) 624, 660
SstI GAGCTC 2 cut(s) 281, 1002
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 7 cut(s) 57, 272, 436, 504, 952, 982, 1073
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 3 cut(s) 215, 513, 782
TaiI ACGT 2 cut(s) 11, 1009
TaqI TCGA 4 cut(s) 182, 281, 338, 496
TasI AATT 5 cut(s) 283, 550, 569, 640, 903
TatI WGTACW 2 cut(s) 960, 1089
TauI GCSGC 3 cut(s) 55, 195, 345
TfiI GAWTC 5 cut(s) 221, 498, 653, 743, 1078
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 2 cut(s) 260, 796
TseFI GTSAC 3 cut(s) 673, 773, 782
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 3 cut(s) 673, 773, 782
TspDTI ATGAA 3 cut(s) 645, 726, 963
TspRI CASTG 2 cut(s) 260, 796
Tth111I GACNNNGTC 2 cut(s) 379, 560
Van91I CCANNNNNTGG 1 cut(s) 989
XapI RAATTY 2 cut(s) 283, 640
XceI RCATGY 1 cut(s) 1046
XspI CTAG 2 cut(s) 624, 660
ZrmI AGTACT 1 cut(s) 1091
Zsp2I ATGCAT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.