Prupe.3G043800_v2.0.a1

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015984
Physical Location & Seq
Reverse (-)
3107491 .. 3110963
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G043800.1

Sequence Viewer

Length: 1107 bp
ATGCTTACTTGTATACCCTGCTCCAAGCAGCTCAACAATGGATCTCTCCACCATCAACAAGACGAAGACGATGCCGTGGCTGGGACTCCTAGAACCAAGCAAGCCATCAAAGCTCTCACTGCTCAGATCAAGGACATGGCATTGAAGGCCTCAGGAGCCTACAAAAACTGCAAGCCATGTTCACGGTCCTGCAATGACAACCGGAACCGGAACTATGCTGAATCCGATACCAACTCGGAGTCGGCGAGGTTCCACTACTCATACCGGAGAACAATGGGGAGCTCGAATTCGACACCCAGGCTATGGGGGAAGGAGATGGACAGTAGGCTTAAAGCCCTATCCAGCGGGGAAGGGACGCCGGCGTCAGTGAGTGGACGGACGGAGTCTATTGTTTTAATGGAGGAAGATGAGCCTAAAGAATGGGTGGCACAAGTGGAGCCTGGTGTGATCATCACTTTTGTTTCTTTGCCCCAAGGAGGAAATGATCTCAAGCGTATTCGGTTCAGTCGTGAAATGTTTAACAAATGGCAAGCTCAAAGGTGGTGGGCAGAAAATTATGACAAGGTCATGGAACTGTACAATGTCCAAAGGTTCAATCACCAAGCAGTCCCACTTCCAACTCCACCTAGATCTGAAGACGAGAACTCAAAGGTTGAATCTGCTAGGGAAAGTCCTGTGACTCCCCCACTGAGCAAAGAGCGCTTGCCGCGCAACTTCCACAGACCAATGGGAATGGGGTACTCTTCATCCGATTCACTTGACCACCATCCAATGCAATCCCGTCCTTTCTGTGACACCAGTGGTCTAGCTTCAACACCTAAACTTTCCAGCATCAGTGGGGTGAATGAATCATCATCAATAGATGGTTCTGTAAGGACTAGTTCAGAGGCAGATCGCTCAGGAGAGTTTTCAGTTAGCAACGCTAGTGATATGGAGACTGAGTGGGTTGAACAGGACGAACCAGGAGTGTACATCACTATAAGAGCATTGCCAGGTGGCACTAGGGAGCTTAGACGTGTCCGGTTCAGCCGGGAAAAGTTTGGTGAAATGCATGCCAGATTGTGGTGGGAAGAGAATAGGGCAAGGATTCAAGAGCAGTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

369

Amino Acids

41.63

Weight (kDa)

6.74

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54180 AT1G54180
fragaria_vesca FvH4_6g34460 FvH4_6g34460
malus_domestica MD09G1186000.v1.1
prunus_persica Prupe.3G043800_v2.0.a1
pyrus_communis pycom09g10320
rosa_chinensis RchiOBHm_Chr2g0144791
rosa_laevigata RLG00000020113
rosa_multiflora Rmu_sc0002354.1_g000028
rosa_roxburghii Rroxscaffold_2G00100970
rosa_rugosa Rorug02G0389600
rosa_samantha Rh2AG441400 Rh2CG428700
rosa_wichuraiana Rw2G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AccB7I CCANNNNNTGG 2 cut(s) 303, 1062
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 709
AciI CCGC 2 cut(s) 345, 707
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 2 cut(s) 356, 362
AfaI GTAC 4 cut(s) 578, 740, 971, 1100
AfeI AGCGCT 1 cut(s) 701
AfiI CCNNNNNNNGG 4 cut(s) 81, 303, 476, 1062
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 6 cut(s) 145, 595, 656, 813, 950, 1091
AhlI ACTAGT 1 cut(s) 878
AjiI CACGTC 1 cut(s) 1016
AjnI CCWGG 4 cut(s) 296, 439, 961, 991
AluBI AGCT 6 cut(s) 31, 113, 282, 533, 809, 1009
AluI AGCT 6 cut(s) 31, 113, 282, 533, 809, 1009
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 929
AlwI GGATC 1 cut(s) 49
Aor51HI AGCGCT 1 cut(s) 701
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 2 cut(s) 702, 711
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 1031
AsuHPI GGTGA 3 cut(s) 590, 853, 1055
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 151
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 72, 642
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 40
BccI CCATC 5 cut(s) 60, 113, 310, 774, 857
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 4 cut(s) 298, 441, 963, 993
BclI TGATCA 1 cut(s) 447
BcnI CCSGG 1 cut(s) 1031
BcoDI GTCTC 1 cut(s) 929
BcuI ACTAGT 1 cut(s) 878
BfaI CTAG 7 cut(s) 90, 627, 663, 806, 879, 924, 1002
BfoI RGCGCY 1 cut(s) 703
BglII AGATCT 1 cut(s) 629
BisI GCNGC 2 cut(s) 29, 707
BlsI GCNGC 2 cut(s) 30, 708
BmcAI AGTACT 1 cut(s) 1100
Bme1390I CCNGG 5 cut(s) 298, 441, 963, 993, 1031
Bme18I GGWCC 1 cut(s) 186
BmgBI CACGTC 1 cut(s) 1016
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 4 cut(s) 157, 206, 251, 438
BmrFI CCNGG 5 cut(s) 298, 441, 963, 993, 1031
BmsI GCATC 2 cut(s) 61, 840
BpiI GAAGAC 2 cut(s) 72, 642
Bpu10I CCTNAGC 1 cut(s) 898
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 1031
BsaHI GRCGYC 2 cut(s) 356, 362
BsaJI CCNNGG 3 cut(s) 75, 296, 472
BsaWI WCCGGW 4 cut(s) 201, 207, 264, 1020
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 303, 476, 1062
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 798
Bse21I CCTNAGG 1 cut(s) 151
Bse3DI GCAATG 2 cut(s) 199, 986
BseBI CCWGG 4 cut(s) 298, 441, 963, 993
BseDI CCNNGG 3 cut(s) 75, 296, 472
BseGI GGATG 2 cut(s) 746, 766
BseLI CCNNNNNNNGG 4 cut(s) 81, 303, 476, 1062
BseMI GCAATG 2 cut(s) 199, 986
BseMII CTCAG 5 cut(s) 137, 165, 680, 912, 930
BseNI ACTGG 1 cut(s) 798
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 709
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 6 cut(s) 202, 208, 265, 359, 1021, 1030
BslFI GGGAC 3 cut(s) 97, 367, 593
BslI CCNNNNNNNGG 4 cut(s) 81, 303, 476, 1062
BsmAI GTCTC 1 cut(s) 929
BsmFI GGGAC 3 cut(s) 97, 367, 593
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 284
Bsp1407I TGTACA 2 cut(s) 576, 969
Bsp143I GATC 6 cut(s) 41, 126, 447, 484, 629, 892
BspACI CCGC 2 cut(s) 345, 707
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 5 cut(s) 136, 164, 681, 911, 931
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 157, 206, 251, 438
BspPI GGATC 1 cut(s) 49
BsrDI GCAATG 2 cut(s) 199, 986
BsrFI RCCGGY 1 cut(s) 358
BsrGI TGTACA 2 cut(s) 576, 969
BsrI ACTGG 1 cut(s) 798
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 75, 296, 472
BssMI GATC 6 cut(s) 41, 126, 447, 484, 629, 892
BssNAI GTATAC 1 cut(s) 14
BssNI GRCGYC 2 cut(s) 356, 362
BssT1I CCWWGG 1 cut(s) 472
Bst1107I GTATAC 1 cut(s) 14
Bst2UI CCWGG 4 cut(s) 298, 441, 963, 993
Bst4CI ACNGT 3 cut(s) 186, 323, 576
Bst6I CTCTTC 2 cut(s) 748, 1065
BstACI GRCGYC 2 cut(s) 356, 362
BstAUI TGTACA 2 cut(s) 576, 969
BstC8I GCNNGC 6 cut(s) 102, 173, 360, 531, 704, 1053
BstDEI CTNAG 6 cut(s) 123, 151, 689, 898, 939, 1010
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 746, 766
BstFNI CGCG 1 cut(s) 709
BstH2I RGCGCY 1 cut(s) 703
BstHHI GCGC 2 cut(s) 702, 711
BstKTI GATC 6 cut(s) 44, 129, 450, 487, 632, 895
BstMAI GTCTC 1 cut(s) 929
BstMBI GATC 6 cut(s) 41, 126, 447, 484, 629, 892
BstMWI GCNNNNNNNGC 7 cut(s) 110, 119, 146, 155, 699, 706, 708
BstNI CCWGG 4 cut(s) 298, 441, 963, 993
BstNSI RCATGY 1 cut(s) 1055
BstSCI CCNGG 5 cut(s) 296, 439, 961, 991, 1029
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 72, 642
BstX2I RGATCY 2 cut(s) 41, 629
BstYI RGATCY 2 cut(s) 41, 629
BstZ17I GTATAC 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 151
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 1016
BtsCI GGATG 2 cut(s) 746, 766
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 5 cut(s) 117, 372, 686, 805, 841
Cac8I GCNNGC 6 cut(s) 102, 173, 360, 531, 704, 1053
CfoI GCGC 2 cut(s) 702, 711
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 2 cut(s) 351, 364
Csp6I GTAC 4 cut(s) 577, 739, 970, 1099
CspCI CAANNNNNGTGG 2 cut(s) 524, 559
CviAII CATG 4 cut(s) 136, 177, 568, 1052
CviQI GTAC 4 cut(s) 577, 739, 970, 1099
DdeI CTNAG 6 cut(s) 123, 151, 689, 898, 939, 1010
DpnI GATC 6 cut(s) 43, 128, 449, 486, 631, 894
DpnII GATC 6 cut(s) 41, 126, 447, 484, 629, 892
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 748, 1065
EarI CTCTTC 2 cut(s) 748, 1065
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 654
Eco81I CCTNAGG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 4 cut(s) 296, 439, 961, 991
EcoT14I CCWWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 1053
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 4 cut(s) 139, 180, 571, 1055
FaqI GGGAC 3 cut(s) 97, 367, 593
FatI CATG 4 cut(s) 135, 176, 567, 1051
FauI CCCGC 1 cut(s) 338
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 29, 707
FokI GGATG 2 cut(s) 733, 753
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 29, 707
FspBI CTAG 7 cut(s) 90, 627, 663, 806, 879, 924, 1002
GlaI GCGC 2 cut(s) 701, 710
GluI GCNGC 2 cut(s) 29, 707
GsaI CCCAGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 703
HaeIII GGCC 1 cut(s) 149
HapII CCGG 6 cut(s) 202, 208, 265, 359, 1021, 1030
HgaI GACGC 2 cut(s) 351, 364
HhaI GCGC 2 cut(s) 702, 711
Hin1I GRCGYC 2 cut(s) 356, 362
Hin1II CATG 4 cut(s) 139, 180, 571, 1055
Hin6I GCGC 2 cut(s) 700, 709
HinP1I GCGC 2 cut(s) 700, 709
HinfI GANTC 9 cut(s) 85, 221, 239, 383, 656, 679, 752, 848, 1087
HpaII CCGG 6 cut(s) 202, 208, 265, 359, 1021, 1030
HphI GGTGA 3 cut(s) 590, 853, 1055
Hpy166II GTNNAC 4 cut(s) 14, 182, 374, 970
Hpy188I TCNGA 6 cut(s) 126, 226, 238, 634, 751, 886
Hpy188III TCNNGA 4 cut(s) 153, 509, 900, 1091
Hpy8I GTNNAC 4 cut(s) 14, 182, 374, 970
HpyAV CCTTC 3 cut(s) 139, 304, 344
HpyCH4III ACNGT 3 cut(s) 186, 323, 576
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 4 cut(s) 171, 192, 775, 1051
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 119, 146, 155, 699, 706, 708
HpyF3I CTNAG 6 cut(s) 123, 151, 689, 898, 939, 1010
HpySE526I ACGT 1 cut(s) 1015
Hsp92I GRCGYC 2 cut(s) 356, 362
Hsp92II CATG 4 cut(s) 139, 180, 571, 1055
HspAI GCGC 2 cut(s) 700, 709
KroI GCCGGC 1 cut(s) 358
KroNI GCCGGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 6 cut(s) 41, 126, 447, 484, 629, 892
LmnI GCTCC 5 cut(s) 26, 155, 279, 436, 1006
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 61, 840
MaeI CTAG 7 cut(s) 90, 627, 663, 806, 879, 924, 1002
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 2 cut(s) 676, 791
MalI GATC 6 cut(s) 43, 128, 449, 486, 631, 894
MboI GATC 6 cut(s) 41, 126, 447, 484, 629, 892
MboII GAAGA 5 cut(s) 77, 416, 647, 735, 1082
MflI RGATCY 2 cut(s) 41, 629
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 286, 553
MlyI GAGTC 4 cut(s) 79, 248, 392, 673
MmeI TCCRAC 1 cut(s) 641
MnlI CCTC 5 cut(s) 160, 240, 394, 470, 880
Mph1103I ATGCAT 1 cut(s) 1053
MreI CGCCGGCG 1 cut(s) 358
MroNI GCCGGC 1 cut(s) 358
MseI TTAA 3 cut(s) 330, 395, 519
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 6 cut(s) 202, 208, 265, 359, 1021, 1030
MspR9I CCNGG 5 cut(s) 298, 441, 963, 993, 1031
MvaI CCWGG 4 cut(s) 298, 441, 963, 993
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 7 cut(s) 110, 119, 146, 155, 699, 706, 708
NaeI GCCGGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 1031
NdeII GATC 6 cut(s) 41, 126, 447, 484, 629, 892
NgoMIV GCCGGC 1 cut(s) 358
NlaIII CATG 4 cut(s) 139, 180, 571, 1055
NlaIV GGNNCC 4 cut(s) 157, 206, 251, 438
NmuCI GTSAC 2 cut(s) 676, 791
NsiI ATGCAT 1 cut(s) 1053
NspI RCATGY 1 cut(s) 1055
PaeI GCATGC 1 cut(s) 1055
PceI AGGCCT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 2 cut(s) 242, 505
PdiI GCCGGC 1 cut(s) 360
PfeI GAWTC 5 cut(s) 221, 656, 752, 848, 1087
PflFI GACNNNGTC 2 cut(s) 382, 563
PflMI CCANNNNNTGG 2 cut(s) 303, 1062
PkrI GCNGC 2 cut(s) 30, 708
PleI GAGTC 4 cut(s) 79, 247, 391, 673
PpsI GAGTC 4 cut(s) 79, 247, 391, 673
Psp124BI GAGCTC 1 cut(s) 284
Psp6I CCWGG 4 cut(s) 296, 439, 961, 991
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 4 cut(s) 296, 439, 961, 991
PspN4I GGNNCC 4 cut(s) 157, 206, 251, 438
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 2 cut(s) 41, 629
PsyI GACNNNGTC 2 cut(s) 382, 563
RsaI GTAC 4 cut(s) 578, 740, 971, 1100
RsaNI GTAC 4 cut(s) 577, 739, 970, 1099
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 330, 395, 519
SatI GCNGC 2 cut(s) 29, 707
Sau3AI GATC 6 cut(s) 41, 126, 447, 484, 629, 892
Sau96I GGNCC 1 cut(s) 186
ScaI AGTACT 1 cut(s) 1100
SchI GAGTC 4 cut(s) 79, 248, 392, 673
ScrFI CCNGG 5 cut(s) 298, 441, 963, 993, 1031
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 2 cut(s) 61, 840
SgrAI CRCCGGYG 1 cut(s) 358
SinI GGWCC 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SpeI ACTAGT 1 cut(s) 878
SphI GCATGC 1 cut(s) 1055
Sse9I AATT 2 cut(s) 286, 553
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 2 cut(s) 345, 707
SspMI CTAG 7 cut(s) 90, 627, 663, 806, 879, 924, 1002
SstI GAGCTC 1 cut(s) 284
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 5 cut(s) 296, 439, 961, 991, 1029
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 186, 323, 576
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 2 cut(s) 284, 290
TasI AATT 2 cut(s) 286, 553
TatI WGTACW 3 cut(s) 576, 969, 1098
TauI GCSGC 1 cut(s) 709
TfiI GAWTC 5 cut(s) 221, 656, 752, 848, 1087
Tru1I TTAA 3 cut(s) 330, 395, 519
Tru9I TTAA 3 cut(s) 330, 395, 519
TscAI CASTG 5 cut(s) 124, 372, 693, 805, 841
TseFI GTSAC 2 cut(s) 676, 791
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 2 cut(s) 676, 791
TspDTI ATGAA 2 cut(s) 735, 861
TspGWI ACGGA 2 cut(s) 391, 395
TspRI CASTG 5 cut(s) 124, 372, 693, 805, 841
Tth111I GACNNNGTC 2 cut(s) 382, 563
Van91I CCANNNNNTGG 2 cut(s) 303, 1062
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 1055
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 7 cut(s) 90, 627, 663, 806, 879, 924, 1002
ZrmI AGTACT 1 cut(s) 1100
Zsp2I ATGCAT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.