Rh2AG441400

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015984
Physical Location & Seq
Forward (+)
65235333 .. 65239110
3778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG441400.1

Sequence Viewer

Length: 969 bp
ATGGCATTGAAGGCCTCGGGAGCCTACAAGAACTGCAAGCCGTGTTCGAGGCCTTGCGGGGATCACCGGAACCGGAACTGTGCGGATTCCGATACGGCGTCGGAGTCGGCGAAGTTCCACTGCTCGTACCGGAGAACCGGGAGCTCGAATTCGACGCCGAGGCTGTGGGGGAAGGAGATGGAGAGCAGGCTGAAGGCGCTTTCGAGCGGCGAAGGGACGCCGGCGTCGGTGAGTGGGAGGACTGAGTCTGTGGTGTTGATGGAGGATGATGAGCCAAAGGAATGGGAAGCGCAAGTGGAGCCTGGTGTGCTCATCACTTTTGTTTCTCTGCCCCAAGGAGGAAATGATCTGAAGCGCATTCGATTCAGCCGGGAACTGTTTAACAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAATTATACAATGTGCAAAGGTTCAATCACCAAGAAGTCCCACTTCCAACCCCACCTAGAGATGAAGATGAGAGCTCAAAGGTTGAATCTTCTAGGGAAAGTCCCGTGACTCCCCCAATGGGCAAAGAACGCCTGCCCCGAAACTTCCACCGGCCAATGGGCGTGGGCTACTCTTCATCAGATTCACTTGATCACCATCCAATGCAATCCCGTCACTACTGTGACACCAGTGGTTTAGCTTCAACACCTAAACTTTCCAGCATAAGTGGAGTCAAAACTGAGTCGTCATCAATAGATGGTTCTATAAGGAGTAGTTCAGAGGCAGATCGCTCAGAGGTTTCAATTAGCAATGCCAGCGATATGGAGACTGAATGGGTTGAGCAGGATGAACCAGGAGTGTACATCACTATCAGAGCATTGCCAGGTGGTGGTAGGGAGCTCAGACGTGTCCGGTTCAGCCGAGAAAAGTTTGGTGAAATGCATGCGAGATTGTGGTGGGAAGAGAATAGGGCCAGGATTCAGGAGCAGTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

322

Amino Acids

36.47

Weight (kDa)

6.29

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX PF08381 93 - 147 1.3e-24 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 266 - 321 4.4e-28 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54180 AT1G54180
fragaria_vesca FvH4_6g34460 FvH4_6g34460
malus_domestica MD09G1186000.v1.1
prunus_persica Prupe.3G043800_v2.0.a1
pyrus_communis pycom09g10320
rosa_chinensis RchiOBHm_Chr2g0144791
rosa_laevigata RLG00000020113
rosa_multiflora Rmu_sc0002354.1_g000028
rosa_roxburghii Rroxscaffold_2G00100970
rosa_rugosa Rorug02G0389600
rosa_samantha Rh2AG441400 Rh2CG428700
rosa_wichuraiana Rw2G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 860
AccBSI CCGCTC 1 cut(s) 207
AciI CCGC 3 cut(s) 57, 83, 207
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 584
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 212, 371
AcyI GRCGYC 4 cut(s) 98, 155, 218, 224
AfaI GTAC 3 cut(s) 128, 833, 962
AfiI CCNNNNNNNGG 4 cut(s) 338, 551, 589, 860
AflIII ACRYGT 1 cut(s) 877
AgsI TTSAA 5 cut(s) 10, 457, 518, 675, 774
AjiI CACGTC 1 cut(s) 878
AjnI CCWGG 4 cut(s) 301, 823, 853, 944
AleI CACNNNNGTG 1 cut(s) 651
AluBI AGCT 5 cut(s) 144, 395, 507, 671, 871
AluI AGCT 5 cut(s) 144, 395, 507, 671, 871
Alw21I GWGCWC 4 cut(s) 146, 312, 509, 873
Alw26I GTCTC 1 cut(s) 791
AlwI GGATC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 4 cut(s) 12, 50, 584, 942
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 3 cut(s) 199, 292, 357
AspS9I GGNCC 1 cut(s) 942
AsuC2I CCSGG 2 cut(s) 139, 371
AsuHPI GGTGA 5 cut(s) 56, 241, 452, 617, 917
AvaI CYCGRG 1 cut(s) 16
BanII GRGCYC 3 cut(s) 146, 509, 873
Bbv12I GWGCWC 4 cut(s) 146, 312, 509, 873
BccI CCATC 4 cut(s) 172, 253, 636, 722
BceAI ACGGC 2 cut(s) 25, 111
BciT130I CCWGG 4 cut(s) 303, 825, 855, 946
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 2 cut(s) 139, 371
BcoDI GTCTC 1 cut(s) 791
BfaI CTAG 2 cut(s) 489, 525
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 962
Bme1390I CCNGG 6 cut(s) 139, 303, 371, 825, 855, 946
BmeT110I CYCGRG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 878
BmgT120I GGNCC 1 cut(s) 942
BmiI GGNNCC 3 cut(s) 22, 71, 300
BmrFI CCNGG 6 cut(s) 139, 303, 371, 825, 855, 946
BpuMI CCSGG 2 cut(s) 139, 371
BsaBI GATNNNNATC 1 cut(s) 627
BsaHI GRCGYC 4 cut(s) 98, 155, 218, 224
BsaJI CCNNGG 3 cut(s) 15, 158, 334
BsaWI WCCGGW 4 cut(s) 66, 72, 129, 882
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 551, 589, 860
Bse118I RCCGGY 2 cut(s) 220, 582
Bse1I ACTGG 1 cut(s) 660
Bse3DI GCAATG 2 cut(s) 787, 848
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 4 cut(s) 303, 825, 855, 946
BseDI CCNNGG 3 cut(s) 15, 158, 334
BseGI GGATG 3 cut(s) 271, 628, 823
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 4 cut(s) 338, 551, 589, 860
BseMI GCAATG 2 cut(s) 787, 848
BseMII CTCAG 5 cut(s) 234, 410, 702, 777, 886
BseNI ACTGG 1 cut(s) 660
BshFI GGCC 4 cut(s) 14, 52, 586, 944
BsiHKAI GWGCWC 4 cut(s) 146, 312, 509, 873
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 8 cut(s) 67, 73, 130, 138, 221, 370, 583, 883
BslFI GGGAC 3 cut(s) 229, 455, 519
BslI CCNNNNNNNGG 4 cut(s) 338, 551, 589, 860
BsmAI GTCTC 1 cut(s) 791
BsmFI GGGAC 3 cut(s) 229, 455, 519
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 4 cut(s) 14, 52, 586, 944
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 4 cut(s) 146, 312, 509, 873
Bsp1407I TGTACA 1 cut(s) 831
Bsp143I GATC 4 cut(s) 61, 346, 622, 757
BspACI CCGC 3 cut(s) 57, 83, 207
BspANI GGCC 4 cut(s) 14, 52, 586, 944
BspCNI CTCAG 5 cut(s) 235, 409, 703, 776, 885
BspLI GGNNCC 3 cut(s) 22, 71, 300
BspPI GGATC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 2 cut(s) 787, 848
BsrFI RCCGGY 2 cut(s) 220, 582
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 1 cut(s) 660
BssAI RCCGGY 2 cut(s) 220, 582
BssECI CCNNGG 3 cut(s) 15, 158, 334
BssMI GATC 4 cut(s) 61, 346, 622, 757
BssNI GRCGYC 4 cut(s) 98, 155, 218, 224
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 4 cut(s) 303, 825, 855, 946
Bst4CI ACNGT 3 cut(s) 80, 378, 653
Bst6I CTCTTC 2 cut(s) 610, 927
BstACI GRCGYC 4 cut(s) 98, 155, 218, 224
BstAUI TGTACA 1 cut(s) 831
BstC8I GCNNGC 7 cut(s) 38, 188, 222, 393, 566, 787, 915
BstDEI CTNAG 5 cut(s) 243, 396, 711, 763, 872
BstF5I GGATG 3 cut(s) 271, 628, 823
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 3 cut(s) 199, 292, 357
BstKTI GATC 4 cut(s) 64, 349, 625, 760
BstMAI GTCTC 1 cut(s) 791
BstMBI GATC 4 cut(s) 61, 346, 622, 757
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 196, 298, 307, 561, 786
BstNI CCWGG 4 cut(s) 303, 825, 855, 946
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 6 cut(s) 137, 301, 369, 823, 853, 944
BstXI CCANNNNNNTGG 2 cut(s) 282, 793
BsuRI GGCC 4 cut(s) 14, 52, 586, 944
BtrI CACGTC 1 cut(s) 878
BtsCI GGATG 3 cut(s) 271, 628, 823
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 667
Cac8I GCNNGC 7 cut(s) 38, 188, 222, 393, 566, 787, 915
CfoI GCGC 3 cut(s) 199, 292, 357
Cfr10I RCCGGY 2 cut(s) 220, 582
Cfr13I GGNCC 1 cut(s) 942
CseI GACGC 4 cut(s) 87, 163, 213, 226
Csp6I GTAC 3 cut(s) 127, 832, 961
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 2 cut(s) 430, 914
CviQI GTAC 3 cut(s) 127, 832, 961
DdeI CTNAG 5 cut(s) 243, 396, 711, 763, 872
DpnI GATC 4 cut(s) 63, 348, 624, 759
DpnII GATC 4 cut(s) 61, 346, 622, 757
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 584
Eam1104I CTCTTC 2 cut(s) 610, 927
EarI CTCTTC 2 cut(s) 610, 927
Ecl136II GAGCTC 3 cut(s) 144, 507, 871
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 2 cut(s) 14, 52
Eco24I GRGCYC 3 cut(s) 146, 509, 873
Eco53kI GAGCTC 3 cut(s) 144, 507, 871
Eco57I CTGAAG 2 cut(s) 212, 371
Eco88I CYCGRG 1 cut(s) 16
EcoICRI GAGCTC 3 cut(s) 144, 507, 871
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 4 cut(s) 301, 823, 853, 944
EcoT14I CCWWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 915
EcoT38I GRGCYC 3 cut(s) 146, 509, 873
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 433, 917
FaiI YATR 8 cut(s) 420, 431, 439, 695, 737, 794, 915, 967
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 3 cut(s) 229, 455, 519
FatI CATG 2 cut(s) 429, 913
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 3 cut(s) 278, 615, 830
FriOI GRGCYC 3 cut(s) 146, 509, 873
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 2 cut(s) 489, 525
GlaI GCGC 3 cut(s) 198, 291, 356
GluI GCNGC 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 4 cut(s) 14, 52, 586, 944
HapII CCGG 8 cut(s) 67, 73, 130, 138, 221, 370, 583, 883
HgaI GACGC 4 cut(s) 87, 163, 213, 226
HhaI GCGC 3 cut(s) 199, 292, 357
Hin1I GRCGYC 4 cut(s) 98, 155, 218, 224
Hin1II CATG 2 cut(s) 433, 917
Hin6I GCGC 3 cut(s) 197, 290, 355
HinP1I GCGC 3 cut(s) 197, 290, 355
HpaII CCGG 8 cut(s) 67, 73, 130, 138, 221, 370, 583, 883
HphI GGTGA 5 cut(s) 56, 241, 452, 617, 917
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 9 cut(s) 91, 103, 351, 399, 613, 751, 766, 845, 875
Hpy188III TCNNGA 2 cut(s) 18, 953
Hpy8I GTNNAC 1 cut(s) 832
Hpy99I CGWCG 3 cut(s) 103, 157, 229
HpyAV CCTTC 4 cut(s) 4, 166, 187, 206
HpyCH4III ACNGT 3 cut(s) 80, 378, 653
HpyCH4IV ACGT 1 cut(s) 877
HpyCH4V TGCA 4 cut(s) 36, 448, 637, 913
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 196, 298, 307, 561, 786
HpyF3I CTNAG 5 cut(s) 243, 396, 711, 763, 872
HpySE526I ACGT 1 cut(s) 877
Hsp92I GRCGYC 4 cut(s) 98, 155, 218, 224
Hsp92II CATG 2 cut(s) 433, 917
HspAI GCGC 3 cut(s) 197, 290, 355
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 4 cut(s) 61, 346, 622, 757
LmnI GCTCC 5 cut(s) 20, 141, 298, 868, 955
MaeI CTAG 2 cut(s) 489, 525
MaeII ACGT 1 cut(s) 877
MaeIII GTNAC 3 cut(s) 538, 644, 653
MalI GATC 4 cut(s) 63, 348, 624, 759
MbiI CCGCTC 1 cut(s) 207
MboI GATC 4 cut(s) 61, 346, 622, 757
MboII GAAGA 4 cut(s) 509, 513, 597, 944
MhlI GDGCHC 4 cut(s) 146, 312, 509, 873
MluCI AATT 4 cut(s) 148, 415, 434, 774
MlyI GAGTC 5 cut(s) 113, 254, 535, 711, 722
MmeI TCCRAC 2 cut(s) 81, 503
MnlI CCTC 9 cut(s) 25, 42, 153, 231, 256, 332, 393, 745, 760
Mph1103I ATGCAT 1 cut(s) 915
MreI CGCCGGCG 1 cut(s) 220
MroNI GCCGGC 1 cut(s) 220
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 8 cut(s) 67, 73, 130, 138, 221, 370, 583, 883
MspR9I CCNGG 6 cut(s) 139, 303, 371, 825, 855, 946
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 4 cut(s) 303, 825, 855, 946
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 196, 298, 307, 561, 786
NaeI GCCGGC 1 cut(s) 222
NciI CCSGG 2 cut(s) 139, 371
NdeII GATC 4 cut(s) 61, 346, 622, 757
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 433, 917
NlaIV GGNNCC 3 cut(s) 22, 71, 300
NmeAIII GCCGAG 2 cut(s) 183, 917
NmuCI GTSAC 3 cut(s) 538, 644, 653
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 1 cut(s) 917
OliI CACNNNNGTG 1 cut(s) 651
PaeI GCATGC 1 cut(s) 917
PceI AGGCCT 2 cut(s) 14, 52
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 568
PctI GAATGC 1 cut(s) 357
PdiI GCCGGC 1 cut(s) 222
PfeI GAWTC 5 cut(s) 86, 363, 518, 614, 949
PflFI GACNNNGTC 2 cut(s) 244, 425
PflMI CCANNNNNTGG 1 cut(s) 860
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 5 cut(s) 112, 253, 535, 710, 721
PpsI GAGTC 5 cut(s) 112, 253, 535, 710, 721
Psp124BI GAGCTC 3 cut(s) 146, 509, 873
Psp6I CCWGG 4 cut(s) 301, 823, 853, 944
PspGI CCWGG 4 cut(s) 301, 823, 853, 944
PspN4I GGNNCC 3 cut(s) 22, 71, 300
PspPI GGNCC 1 cut(s) 942
PsyI GACNNNGTC 2 cut(s) 244, 425
RsaI GTAC 3 cut(s) 128, 833, 962
RsaNI GTAC 3 cut(s) 127, 832, 961
RseI CAYNNNNRTG 1 cut(s) 651
SacI GAGCTC 3 cut(s) 146, 509, 873
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 4 cut(s) 61, 346, 622, 757
Sau96I GGNCC 1 cut(s) 942
ScaI AGTACT 1 cut(s) 962
SchI GAGTC 5 cut(s) 113, 254, 535, 711, 722
ScrFI CCNGG 6 cut(s) 139, 303, 371, 825, 855, 946
SduI GDGCHC 4 cut(s) 146, 312, 509, 873
SgrAI CRCCGGYG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 651
SphI GCATGC 1 cut(s) 917
Sse9I AATT 4 cut(s) 148, 415, 434, 774
SseBI AGGCCT 2 cut(s) 14, 52
SsiI CCGC 3 cut(s) 57, 83, 207
SspMI CTAG 2 cut(s) 489, 525
SstI GAGCTC 3 cut(s) 146, 509, 873
StuI AGGCCT 2 cut(s) 14, 52
StyD4I CCNGG 6 cut(s) 137, 301, 369, 823, 853, 944
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 80, 378, 653
TaiI ACGT 1 cut(s) 880
TaqI TCGA 5 cut(s) 47, 146, 152, 203, 361
TasI AATT 4 cut(s) 148, 415, 434, 774
TatI WGTACW 2 cut(s) 831, 960
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 5 cut(s) 86, 363, 518, 614, 949
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 125, 667
TseFI GTSAC 3 cut(s) 538, 644, 653
Tsp45I GTSAC 3 cut(s) 538, 644, 653
TspDTI ATGAA 3 cut(s) 510, 597, 834
TspRI CASTG 2 cut(s) 125, 667
Tth111I GACNNNGTC 2 cut(s) 244, 425
Van91I CCANNNNNTGG 1 cut(s) 860
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 917
XspI CTAG 2 cut(s) 489, 525
ZrmI AGTACT 1 cut(s) 962
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.