AT1G55160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010994
Physical Location & Seq
Forward (+)
20577377 .. 20580010
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55160.1

Sequence Viewer

Length: 567 bp
ATGAGTGAAGAAACTCCGAAGCTTTTCACCAATAAACCCAAGAAGAAGGCCATTATCGCTCAGCTTAAGCACGTTGAAGCCAATTTCAACAATCCCACCGTTCCTCCATCATCTAAACCGTCTCCAGCTGCAGCAGCGGCGGCTTCGTATACGATGGGTGGTGGTTCTGTTCCTCCTCCGCCTCCTCCTAAGGAATCATTCGCTCGTAGGTACAAATATGTCTGGCCGCTTCTCCTTACCGTCAATCTCGCCGTCGGAGGTTATCTGTTCTTTAGAACTAAGAAAAAGGACCTAGATCCTGTAGTTGAAGAGACGGCTGCTAAATCGAGTTCAGTTGCAGCTCCTGTTACTGTGGAAAAAACTTTGTCTTCCACAGTGGTTGCAGAGCCAGTGGTGATCAAGGCACGTGAGCCAATTCCGGAGAAACAACAACGTGAGCTCTTCAAATGGATGTTGGAGGAGAAAAGGAAAGTAAATCCGAAAAACGCAGAAGAGAAGAAACGGAATGACGAAGAGAAAGCGATTCTCAAACAGTTCATCGGCTCCAAAACCATTCCTACTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.83

Weight (kDa)

9.78

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55160 AT1G55160 AT1G55160
fragaria_vesca FvH4_6g33180
malus_domestica MD09G1194300.v1.1 MD17G1174800.v1.1
prunus_persica Prupe.3G050800_v2.0.a1
pyrus_communis pycom09g11080
rosa_chinensis RchiOBHm_Chr2g0142911
rosa_laevigata RLG00000019996
rosa_multiflora Rmu_sc0007929.1_g000004
rosa_roxburghii Rroxscaffold_2G00102230 Rroxscaffold_2G00103270
rosa_rugosa Rorug02G0376700 Rorug02G0385100
rosa_samantha Rh2AG429600 Rh2BG438700 Rh2CG415000 Rh2DG448800
rosa_wichuraiana Rw2G035110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 4 cut(s) 137, 140, 179, 227
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 1 cut(s) 224
AcvI CACGTG 1 cut(s) 407
AfaI GTAC 1 cut(s) 212
AflII CTTAAG 1 cut(s) 65
AgsI TTSAA 4 cut(s) 77, 88, 308, 445
AluBI AGCT 5 cut(s) 22, 64, 128, 341, 439
AluI AGCT 5 cut(s) 22, 64, 128, 341, 439
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 126, 305
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 2 cut(s) 48, 224
ApeKI GCWGC 5 cut(s) 128, 131, 134, 317, 338
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 19, 406
AvaII GGWCC 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 189
BanII GRGCYC 1 cut(s) 441
BbrPI CACGTG 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 115, 143, 146, 304, 350
BccI CCATC 2 cut(s) 115, 148
BceAI ACGGC 2 cut(s) 236, 330
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 2 cut(s) 126, 305
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 129, 300
BfrI CTTAAG 1 cut(s) 65
BisI GCNGC 8 cut(s) 129, 132, 135, 138, 141, 227, 318, 339
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 8 cut(s) 130, 133, 136, 139, 142, 228, 319, 340
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 407
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bse1I ACTGG 1 cut(s) 389
Bse21I CCTNAGG 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 418
BseGI GGATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 3 cut(s) 165, 174, 473
BseXI GCAGC 5 cut(s) 115, 143, 146, 304, 350
BshFI GGCC 2 cut(s) 50, 226
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 126, 305
BsmBI CGTCTC 2 cut(s) 126, 305
BsnI GGCC 2 cut(s) 50, 226
Bsp1286I GDGCHC 1 cut(s) 441
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 295, 396
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 4 cut(s) 137, 140, 179, 227
BspANI GGCC 2 cut(s) 50, 226
BspCNI CTCAG 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 544
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 446
BspTI CTTAAG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 389
BssMI GATC 2 cut(s) 295, 396
BssNAI GTATAC 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 150
Bst4CI ACNGT 6 cut(s) 100, 120, 241, 352, 376, 534
Bst6I CTCTTC 4 cut(s) 303, 446, 486, 507
BstAFI CTTAAG 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 407
BstDEI CTNAG 3 cut(s) 60, 189, 279
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 2 cut(s) 298, 399
BstMAI GTCTC 2 cut(s) 126, 305
BstMBI GATC 2 cut(s) 295, 396
BstMWI GCNNNNNNNGC 4 cut(s) 56, 134, 137, 140
BstSFI CTRYAG 2 cut(s) 129, 300
BstV1I GCAGC 5 cut(s) 115, 143, 146, 304, 350
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 2 cut(s) 50, 226
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 2 cut(s) 381, 396
CaiI CAGNNNCTG 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 3 cut(s) 60, 189, 279
DpnI GATC 2 cut(s) 297, 398
DpnII GATC 2 cut(s) 295, 396
EaeI YGGCCR 1 cut(s) 224
Eam1104I CTCTTC 4 cut(s) 303, 446, 486, 507
EarI CTCTTC 4 cut(s) 303, 446, 486, 507
EciI GGCGGA 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 439
Eco72I CACGTG 1 cut(s) 407
Eco81I CCTNAGG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 441
Esp3I CGTCTC 2 cut(s) 126, 305
FaiI YATR 2 cut(s) 150, 219
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 8 cut(s) 129, 132, 135, 138, 141, 227, 318, 339
FokI GGATG 1 cut(s) 463
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 8 cut(s) 129, 132, 135, 138, 141, 227, 318, 339
FspBI CTAG 1 cut(s) 293
GluI GCNGC 8 cut(s) 129, 132, 135, 138, 141, 227, 318, 339
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 2 cut(s) 50, 226
HapII CCGG 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 194, 523
HpaII CCGG 1 cut(s) 419
HphI GGTGA 2 cut(s) 19, 406
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 4 cut(s) 18, 257, 480, 566
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 6 cut(s) 100, 120, 241, 352, 376, 534
HpyCH4IV ACGT 3 cut(s) 72, 406, 433
HpyCH4V TGCA 3 cut(s) 131, 338, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 134, 137, 140
HpyF3I CTNAG 3 cut(s) 60, 189, 279
HpySE526I ACGT 3 cut(s) 72, 406, 433
Kpn2I TCCGGA 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 2 cut(s) 295, 396
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 2 cut(s) 346, 548
LpnPI CCDG 6 cut(s) 138, 208, 312, 357, 402, 432
Lsp1109I GCAGC 5 cut(s) 115, 143, 146, 304, 350
MaeI CTAG 1 cut(s) 293
MaeII ACGT 3 cut(s) 72, 406, 433
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 297, 398
MboI GATC 2 cut(s) 295, 396
MboII GAAGA 8 cut(s) 20, 55, 320, 360, 433, 503, 508, 524
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 2 cut(s) 82, 414
MmeI TCCRAC 2 cut(s) 235, 435
MnlI CCTC 7 cut(s) 114, 183, 186, 192, 195, 251, 451
MroI TCCGGA 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 2 cut(s) 128, 137
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 1 cut(s) 419
MwoI GCNNNNNNNGC 4 cut(s) 56, 134, 137, 140
NdeII GATC 2 cut(s) 295, 396
NlaIV GGNNCC 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 194, 523
PkrI GCNGC 8 cut(s) 130, 133, 136, 139, 142, 228, 319, 340
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
Ppu21I YACGTR 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 289
PspCI CACGTG 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SacI GAGCTC 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 8 cut(s) 129, 132, 135, 138, 141, 227, 318, 339
Sau3AI GATC 2 cut(s) 295, 396
Sau96I GGNCC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 441
SfcI CTRYAG 2 cut(s) 129, 300
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 82, 414
SsiI CCGC 4 cut(s) 137, 140, 179, 227
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 1 cut(s) 441
TaaI ACNGT 6 cut(s) 100, 120, 241, 352, 376, 534
TaiI ACGT 3 cut(s) 75, 409, 436
TaqI TCGA 1 cut(s) 326
TasI AATT 2 cut(s) 82, 414
TauI GCSGC 3 cut(s) 140, 143, 229
TfiI GAWTC 2 cut(s) 194, 523
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 381, 396
TseI GCWGC 5 cut(s) 128, 131, 134, 317, 338
TspDTI ATGAA 1 cut(s) 526
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 2 cut(s) 381, 396
Vha464I CTTAAG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.