MD09G1194300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010994
Physical Location & Seq
Forward (+)
17458537 .. 17461507
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1194300.v1.1.491

Sequence Viewer

Length: 666 bp
ATGAACCGGGCCCGGCCCAATCACGACCTGACTGCAAAAGTTAGAAAAGCAAACACCAGTGTAGATTGTGGAGTACGCGAGGAAAAGGACTTTGGAAGTTTGGGGAGAAGAAGAAAGGAAGGAATTTCGGACGTTCCAGCAACAATGATAGAAGATGGTCCCAAGCTCTACGCCAACAAACCCAAGAAAGCGCAGTTGAAACAGTTTCAGGATCAACACAAAGGGAAGGACTTTTCTTCGCCATCGCCATCGACAATGACGTCGGCTCAGTCTTCGTCTCCGCCGCCACCTCCGCCCCCGAAGGAGTCGTTTGCTCGGCGTTACAAGTTTCTCTGGCCTCTGCTCTTGACTGTCAATCTGGGCGTTGGAGCTTACCTGTTTATGAGAACAAAGAAGAAAGACATAGAGGAAGACGTGACTACTACCGTTCCAACAACAGCTCAAACAACACCTACTACTGAGAAACCCCTACCTTCACCAAGCATCACAGAGCCTGTGAAATTGCGGGAACCAATCCCGGAGGATCAACAACGCCAACTTTTCAAGTGGATGCTGGAAGAGAAAAGAAAGGTTAAACCAAAAGATCCTGAAGAGAAGAAGCGCCTTGATGAGGAGAAAGCCATTCTTAAACAGTTTATCCGGGCAAAATCCCTTCCAAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.16

Weight (kDa)

9.84

Isoelectric Point (pI)

69.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55160 AT1G55160 AT1G55160
fragaria_vesca FvH4_6g33180
malus_domestica MD09G1194300.v1.1 MD17G1174800.v1.1
prunus_persica Prupe.3G050800_v2.0.a1
pyrus_communis pycom09g11080
rosa_chinensis RchiOBHm_Chr2g0142911
rosa_laevigata RLG00000019996
rosa_multiflora Rmu_sc0007929.1_g000004
rosa_roxburghii Rroxscaffold_2G00102230 Rroxscaffold_2G00103270
rosa_rugosa Rorug02G0376700 Rorug02G0385100
rosa_samantha Rh2AG429600 Rh2BG438700 Rh2CG415000 Rh2DG448800
rosa_wichuraiana Rw2G035110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 259
AatII GACGTC 1 cut(s) 263
AccII CGCG 1 cut(s) 78
AciI CCGC 4 cut(s) 281, 284, 293, 505
AclWI GGATC 3 cut(s) 219, 531, 578
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 260
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 2 cut(s) 199, 544
AjiI CACGTC 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 3 cut(s) 166, 371, 440
AluI AGCT 3 cut(s) 166, 371, 440
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 3 cut(s) 219, 531, 578
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 3 cut(s) 9, 14, 335
ApaI GGGCCC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 123
AspLEI GCGC 2 cut(s) 193, 603
AspS9I GGNCC 4 cut(s) 9, 10, 15, 158
AsuC2I CCSGG 4 cut(s) 8, 13, 518, 641
AsuHPI GGTGA 1 cut(s) 468
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 264, 417
BccI CCATC 3 cut(s) 149, 250, 256
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BcnI CCSGG 4 cut(s) 8, 13, 518, 641
BcoDI GTCTC 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 604
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 4 cut(s) 8, 13, 518, 641
Bme18I GGWCC 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 4 cut(s) 9, 10, 15, 158
BmiI GGNNCC 3 cut(s) 11, 160, 510
BmrFI CCNGG 4 cut(s) 8, 13, 518, 641
BmsI GCATC 2 cut(s) 492, 540
BpiI GAAGAC 2 cut(s) 264, 417
BpuMI CCSGG 4 cut(s) 8, 13, 518, 641
BsaHI GRCGYC 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 555
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 2 cut(s) 281, 450
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 626
BseSI GKGCMC 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 11, 16, 337
BsiSI CCGG 4 cut(s) 7, 13, 518, 640
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 3 cut(s) 11, 16, 337
Bsp120I GGGCCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 211, 523, 583
BspACI CCGC 4 cut(s) 281, 284, 293, 505
BspANI GGCC 3 cut(s) 11, 16, 337
BspCNI CTCAG 2 cut(s) 280, 451
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 11, 160, 510
BspPI GGATC 3 cut(s) 219, 531, 578
BsrI ACTGG 1 cut(s) 57
BssMI GATC 3 cut(s) 211, 523, 583
BssNI GRCGYC 1 cut(s) 260
Bst4CI ACNGT 4 cut(s) 204, 352, 427, 633
Bst6I CTCTTC 2 cut(s) 552, 585
BstACI GRCGYC 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 267, 459
BstENI CCTNNNNNAGG 1 cut(s) 608
BstF5I GGATG 1 cut(s) 555
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 2 cut(s) 193, 603
BstKTI GATC 3 cut(s) 214, 526, 586
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 3 cut(s) 211, 523, 583
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSCI CCNGG 4 cut(s) 6, 11, 516, 639
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 78
BstV2I GAAGAC 2 cut(s) 264, 417
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 3 cut(s) 11, 16, 337
BtgZI GCGATG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 64
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 2 cut(s) 193, 603
Cfr13I GGNCC 4 cut(s) 9, 10, 15, 158
Csp6I GTAC 1 cut(s) 74
CviJI RGCY 9 cut(s) 11, 16, 166, 266, 337, 371, 440, 493, 620
CviKI_1 RGCY 9 cut(s) 11, 16, 166, 266, 337, 371, 440, 493, 620
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 2 cut(s) 267, 459
DpnI GATC 3 cut(s) 213, 525, 585
DpnII GATC 3 cut(s) 211, 523, 583
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 552, 585
EarI CTCTTC 2 cut(s) 552, 585
EciI GGCGGA 2 cut(s) 270, 282
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 13
Esp3I CGTCTC 1 cut(s) 282
FaiI YATR 2 cut(s) 383, 404
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 144
FauI CCCGC 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 562
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 284
GlaI GCGC 2 cut(s) 192, 602
GluI GCNGC 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 3 cut(s) 11, 16, 337
HapII CCGG 4 cut(s) 7, 13, 518, 640
HhaI GCGC 2 cut(s) 193, 603
Hin1I GRCGYC 1 cut(s) 260
Hin6I GCGC 2 cut(s) 191, 601
HinP1I GCGC 2 cut(s) 191, 601
HinfI GANTC 1 cut(s) 305
HpaII CCGG 4 cut(s) 7, 13, 518, 640
HphI GGTGA 1 cut(s) 468
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 4 cut(s) 23, 209, 346, 587
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 5 cut(s) 113, 220, 295, 483, 662
HpyCH4III ACNGT 4 cut(s) 204, 352, 427, 633
HpyCH4IV ACGT 3 cut(s) 132, 260, 414
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 267, 459
HpySE526I ACGT 3 cut(s) 132, 260, 414
Hsp92I GRCGYC 1 cut(s) 260
HspAI GCGC 2 cut(s) 191, 601
Kzo9I GATC 3 cut(s) 211, 523, 583
LmnI GCTCC 1 cut(s) 368
LweI GCATC 2 cut(s) 492, 540
MaeII ACGT 3 cut(s) 132, 260, 414
MaeIII GTNAC 2 cut(s) 320, 415
MalI GATC 3 cut(s) 213, 525, 585
MboI GATC 3 cut(s) 211, 523, 583
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 123, 500
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 346, 455
MnlI CCTC 6 cut(s) 73, 300, 348, 400, 514, 604
MseI TTAA 2 cut(s) 573, 627
MspI CCGG 4 cut(s) 7, 13, 518, 640
MspR9I CCNGG 4 cut(s) 8, 13, 518, 641
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 4 cut(s) 8, 13, 518, 641
NdeII GATC 3 cut(s) 211, 523, 583
NlaIV GGNNCC 3 cut(s) 11, 160, 510
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 11, 160, 510
PspOMI GGGCCC 1 cut(s) 9
PspPI GGNCC 4 cut(s) 9, 10, 15, 158
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 573, 627
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 211, 523, 583
Sau96I GGNCC 4 cut(s) 9, 10, 15, 158
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 4 cut(s) 8, 13, 518, 641
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 492, 540
SinI GGWCC 1 cut(s) 158
Sse9I AATT 2 cut(s) 123, 500
SsiI CCGC 4 cut(s) 281, 284, 293, 505
StyD4I CCNGG 4 cut(s) 6, 11, 516, 639
TaaI ACNGT 4 cut(s) 204, 352, 427, 633
TaiI ACGT 3 cut(s) 135, 263, 417
TaqI TCGA 1 cut(s) 251
TasI AATT 2 cut(s) 123, 500
TauI GCSGC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 573, 627
Tru9I TTAA 2 cut(s) 573, 627
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 608
XapI RAATTY 1 cut(s) 123
ZraI GACGTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.