Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Forward (+)

48089151 .. 48135086

Gene Structure 45936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0376700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAAGCCAGAAGAAGATGATGGTTGTTTTTGGGTTACTTGCGGCTGTGTTTTTGGAGAGTGTGGCCGCGCAGACGGCCCATGTGGTGGGAGGTAGCGTAGGCTGGACCATACCACAGAATGGTGCACAAGAGTATGTCACTTGGGCGTCTAGTCAGAAGTTCATAGTCGGTGATGTTCTAATCTTCAACTTCGCGACAGACGCACACGACGTAGTGCAAGTACCCAAAGCATCGTTCGACTCATGCAGCTCCGCCAACCCAATCGGCAGTACCATCACCACGGGCCCGGCCAACATCACTCTCACATCTGCCGGCGACCACTACTACATCTGCACTTTCGGCAGCCACTGCCAGTCCGGCCAGAAGCTCGCCATCACCGTCTCAGCATCCGCCACGTCACCCGGAGCCTCCCCTTCTGCACCAACTCCTATGTCTCCACCTCCACCCACTACCACTACTACTCCTACCACGCCTTCACCCACATCTGACGCCCCTTGCCCTCCGGTCCAAGCACCATCTCCATCCACCAAAACCACGGGGCCCACAGCTAGCACCACACCAGGATCCACCGTGTTGCCGCCGAGCTCTTCTTCCCCTGCCGTTGGGGCTGGTTTCGTTTTGTGCTTGTTGTCCCTTGTTGTGGGATTGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

219

Amino Acids

22.12

Weight (kDa)

5.65

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 122	1.2e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	88, 122
AccII	CGCG	2 cut(s)	71, 197
AciI	CCGC	5 cut(s)	44, 69, 255, 393, 581
AclWI	GGATC	2 cut(s)	561, 574
AcoI	YGGCCR	3 cut(s)	66, 291, 361
AcyI	GRCGYC	2 cut(s)	149, 492
AfaI	GTAC	2 cut(s)	225, 274
AfiI	CCNNNNNNNGG	4 cut(s)	88, 122, 605, 643
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	252, 370, 551, 588
AluI	AGCT	4 cut(s)	252, 370, 551, 588
Alw21I	GWGCWC	2 cut(s)	130, 590
Alw26I	GTCTC	2 cut(s)	388, 441
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	561, 574
AlwNI	CAGNNNCTG	1 cut(s)	351
AoxI	GGCC	6 cut(s)	66, 78, 286, 291, 361, 542
ApaI	GGGCCC	2 cut(s)	290, 546
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	249, 345
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
AsuC2I	CCSGG	2 cut(s)	290, 405
AsuHPI	GGTGA	5 cut(s)	185, 271, 370, 393, 471
AsuNHI	GCTAGC	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	108, 508
BaeGI	GKGCMC	3 cut(s)	130, 290, 546
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	3 cut(s)	290, 546, 590
Bbv12I	GWGCWC	2 cut(s)	130, 590
BbvI	GCAGC	2 cut(s)	261, 357
BccI	CCATC	5 cut(s)	16, 284, 383, 526, 532
BceAI	ACGGC	2 cut(s)	93, 587
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	2 cut(s)	290, 405
BcoDI	GTCTC	2 cut(s)	388, 441
BfaI	CTAG	2 cut(s)	153, 552
BglI	GCCNNNNNGGC	2 cut(s)	360, 608
BisI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
BlsI	GCNGC	5 cut(s)	46, 70, 251, 347, 582
Bme1390I	CCNGG	3 cut(s)	290, 405, 564
Bme18I	GGWCC	2 cut(s)	108, 508
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
BmiI	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
BmrFI	CCNGG	3 cut(s)	290, 405, 564
BmsI	GCATC	2 cut(s)	242, 398
BmtI	GCTAGC	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	290, 405
BsaHI	GRCGYC	2 cut(s)	149, 492
BsaJI	CCNNGG	2 cut(s)	282, 537
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 448, 478
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 122, 605, 643
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	282, 537
BseGI	GGATG	2 cut(s)	389, 524
BseLI	CCNNNNNNNGG	4 cut(s)	88, 122, 605, 643
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	3 cut(s)	130, 290, 546
BseXI	GCAGC	2 cut(s)	261, 357
BsgI	GTGCAG	2 cut(s)	319, 405
Bsh1236I	CGCG	2 cut(s)	71, 197
BshFI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
BsiHKAI	GWGCWC	2 cut(s)	130, 590
BsiSI	CCGG	5 cut(s)	290, 315, 360, 405, 506
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	4 cut(s)	88, 122, 605, 643
BsmAI	GTCTC	2 cut(s)	388, 441
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
Bsp120I	GGGCCC	2 cut(s)	286, 542
Bsp1286I	GDGCHC	4 cut(s)	130, 290, 546, 590
Bsp143I	GATC	1 cut(s)	566
Bsp68I	TCGCGA	1 cut(s)	197
BspACI	CCGC	5 cut(s)	44, 69, 255, 393, 581
BspANI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	2 cut(s)	71, 197
BspLI	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	561, 574
BspQI	GCTCTTC	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	282, 537
BssMI	GATC	1 cut(s)	566
BssNI	GRCGYC	2 cut(s)	149, 492
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	382, 574
Bst6I	CTCTTC	1 cut(s)	595
BstACI	GRCGYC	2 cut(s)	149, 492
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	316, 372, 553
BstDEI	CTNAG	1 cut(s)	385
BstDSI	CCRYGG	2 cut(s)	282, 537
BstF5I	GGATG	2 cut(s)	389, 524
BstFNI	CGCG	2 cut(s)	71, 197
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	2 cut(s)	388, 441
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 203, 342, 351, 360, 608
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	3 cut(s)	288, 403, 562
BstSLI	GKGCMC	3 cut(s)	130, 290, 546
BstUI	CGCG	2 cut(s)	71, 197
BstV1I	GCAGC	2 cut(s)	261, 357
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BsuRI	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
BtgI	CCRYGG	2 cut(s)	282, 537
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	389, 524
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	349
BtuMI	TCGCGA	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	316, 372, 553
CaiI	CAGNNNCTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
CseI	GACGC	3 cut(s)	138, 212, 500
Csp6I	GTAC	2 cut(s)	224, 273
CviAII	CATG	2 cut(s)	83, 246
CviQI	GTAC	2 cut(s)	224, 273
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
EaeI	YGGCCR	3 cut(s)	66, 291, 361
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
EciI	GGCGGA	2 cut(s)	244, 382
Ecl136II	GAGCTC	1 cut(s)	588
Eco24I	GRGCYC	3 cut(s)	290, 546, 590
Eco47I	GGWCC	2 cut(s)	108, 508
Eco53kI	GAGCTC	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	562
EcoT38I	GRGCYC	3 cut(s)	290, 546, 590
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	2 cut(s)	86, 249
FaiI	YATR	6 cut(s)	84, 113, 138, 167, 247, 434
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	2 cut(s)	82, 245
Fnu4HI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
FokI	GGATG	2 cut(s)	376, 511
FriOI	GRGCYC	3 cut(s)	290, 546, 590
Fsp4HI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
FspBI	CTAG	2 cut(s)	153, 552
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
HaeIII	GGCC	6 cut(s)	68, 80, 288, 293, 363, 544
HapII	CCGG	5 cut(s)	290, 315, 360, 405, 506
HgaI	GACGC	3 cut(s)	138, 212, 500
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	2 cut(s)	149, 492
Hin1II	CATG	2 cut(s)	86, 249
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	5 cut(s)	290, 315, 360, 405, 506
HphI	GGTGA	5 cut(s)	185, 271, 370, 393, 471
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	159, 490
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	426, 486
HpyCH4III	ACNGT	2 cut(s)	382, 574
HpyCH4IV	ACGT	2 cut(s)	213, 398
HpyCH4V	TGCA	5 cut(s)	128, 220, 249, 336, 422
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 203, 342, 351, 360, 608
HpyF3I	CTNAG	1 cut(s)	385
HpySE526I	ACGT	2 cut(s)	213, 398
Hsp92I	GRCGYC	2 cut(s)	149, 492
Hsp92II	CATG	2 cut(s)	86, 249
HspAI	GCGC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	566
LguI	GCTCTTC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	257, 407
Lsp1109I	GCAGC	2 cut(s)	261, 357
LweI	GCATC	2 cut(s)	242, 398
MaeI	CTAG	2 cut(s)	153, 552
MaeII	ACGT	2 cut(s)	213, 398
MaeIII	GTNAC	3 cut(s)	36, 139, 399
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	5 cut(s)	25, 28, 178, 582, 585
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	4 cut(s)	130, 290, 546, 590
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	86, 421, 453, 513
MroNI	GCCGGC	1 cut(s)	314
MspI	CCGG	5 cut(s)	290, 315, 360, 405, 506
MspR9I	CCNGG	3 cut(s)	290, 405, 564
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	2 cut(s)	71, 197
MwoI	GCNNNNNNNGC	6 cut(s)	77, 203, 342, 351, 360, 608
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	2 cut(s)	290, 405
NdeII	GATC	1 cut(s)	566
NgoMIV	GCCGGC	1 cut(s)	314
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	2 cut(s)	86, 249
NlaIV	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
NmeAIII	GCCGAG	1 cut(s)	609
NmuCI	GTSAC	2 cut(s)	139, 399
NruI	TCGCGA	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 378
PdiI	GCCGGC	1 cut(s)	316
PflMI	CCANNNNNTGG	2 cut(s)	88, 122
PkrI	GCNGC	5 cut(s)	46, 70, 251, 347, 582
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	5 cut(s)	288, 409, 543, 544, 568
PspOMI	GGGCCC	2 cut(s)	286, 542
PspPI	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
PstNI	CAGNNNCTG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	566
RruI	TCGCGA	1 cut(s)	197
RsaI	GTAC	2 cut(s)	225, 274
RsaNI	GTAC	2 cut(s)	224, 273
SacI	GAGCTC	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	595
SatI	GCNGC	5 cut(s)	45, 69, 250, 346, 581
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	7 cut(s)	79, 108, 286, 287, 508, 542, 543
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	290, 405, 564
SduI	GDGCHC	4 cut(s)	130, 290, 546, 590
SetI	ASST	8 cut(s)	97, 216, 254, 372, 401, 445, 553, 590
SfaNI	GCATC	2 cut(s)	242, 398
SinI	GGWCC	2 cut(s)	108, 508
SsiI	CCGC	5 cut(s)	44, 69, 255, 393, 581
SspMI	CTAG	2 cut(s)	153, 552
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	3 cut(s)	288, 403, 562
TaaI	ACNGT	2 cut(s)	382, 574
TaiI	ACGT	2 cut(s)	216, 401
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	3 cut(s)	47, 71, 583
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	2 cut(s)	139, 399
TseI	GCWGC	2 cut(s)	249, 345
Tsp45I	GTSAC	2 cut(s)	139, 399
TspDTI	ATGAA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	2 cut(s)	88, 122
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	2 cut(s)	108, 508
XspI	CTAG	2 cut(s)	153, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.