Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Reverse (-)

57831075 .. 57836852

Gene Structure 5778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGGAAGTCTTCTATATTGCTCATCAATGGAAGCTTGCAAAGAAGAATCCATGGACTCATAGGAGCTTTCTTTAAGTCTCCACACCTCAAAGCTCAAATCACCAGAGACATGCAGAAGTATGTCCAAGAATCAATGGCAACTTGGAGAGATGACCTTCCCATTTTCATTCAAGATGAAACCAAAAATATTGCATTTCAAGTACTTGTCAAAGCATTGATTAGTCTGGATCCTGGTGAGGACATGGAGTTTCTAAAGAAACAGTTCCAAGAATTCATTGCTGGCCTCATGTCTATACCCATCAATATTCCTGGAAGTAGGCTTTACAGATCATTACAGGCCAAGAAGAAAATGGTCAAGCTAGTCCAGAAAATTATACAAGCTAAAAAGGAGAGTGGGATCTCCAATGTTTCCCAAGATGTGGTGGATGTTTTGCTCAATGACACAAGTGATCAATTAACAGATGATCTTATAGCAGATAACATGATTGATATGATGATACCAGGAGAGGATTCAGTACCACTTCTTATGACTCTTGCAATCAAATACCTTTCAGATTCCCCCACTGCTCTTCAACAGTTAACGAAGGAGAACATGGAGTTAAAAACACTCAAAGAGCAGCTTGGAGAGCCATTGTTTTGGAGTGATTACTTATCCTTACCATTTACACATAATGTGATTACAGAAACTCTAAGGATGGGAAACATCATAAATGGGGTGATGAGGAAGGCCATGAAAGATGTTGAGATAAAAGGCTATCAAATACCAAAGGGGTGGTGTGTCTTCACATACTTTAGATCAGTTCATCTTGATGAGAATAACTATGATGGGGCTTATGACTTCAATCCATGGAGATGGCAAGACAAAGACATAAGCAGCTGTAACTTCACTCCGTTTGGAGGTGGACAAAGACTTTGTCCTGGGCTTGACTTGGCTAGGCTGGAAGCTTCCATCTTCCTACACCACTTTATCACTCAGTTCAGTTGGGTGGCTGAGGATGACACAATTGTAAACTTCCCCACTGTAAGAATGAAGAGGAGGATGCCAATCTGGGTCAAAAGGACAAGGGCCGACCTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

360

Amino Acids

41.35

Weight (kDa)

7.02

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	103 - 335	3e-42	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AclWI	GGATC	3 cut(s)	224, 237, 407
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	3 cut(s)	204, 519, 1079
AfiI	CCNNNNNNNGG	2 cut(s)	421, 899
AgsI	TTSAA	4 cut(s)	173, 200, 575, 844
AjnI	CCWGG	4 cut(s)	232, 310, 502, 919
AluBI	AGCT	8 cut(s)	36, 68, 95, 361, 383, 622, 879, 947
AluI	AGCT	8 cut(s)	36, 68, 95, 361, 383, 622, 879, 947
Alw26I	GTCTC	2 cut(s)	84, 102
AlwI	GGATC	3 cut(s)	224, 237, 407
AoxI	GGCC	4 cut(s)	283, 339, 729, 1068
ApeKI	GCWGC	2 cut(s)	619, 876
ApoI	RAATTY	1 cut(s)	272
ArsI	GACNNNNNNTTYG	4 cut(s)	897, 901, 929, 933
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	1068
AsuHPI	GGTGA	3 cut(s)	94, 248, 730
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	3, 775
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	2 cut(s)	631, 888
BccI	CCATC	5 cut(s)	308, 691, 821, 849, 959
BciT130I	CCWGG	4 cut(s)	234, 312, 504, 921
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	84, 102
BfaI	CTAG	2 cut(s)	362, 936
BisI	GCNGC	2 cut(s)	620, 877
BlsI	GCNGC	2 cut(s)	621, 878
BmcAI	AGTACT	1 cut(s)	204
Bme1390I	CCNGG	4 cut(s)	234, 312, 504, 921
BmgT120I	GGNCC	1 cut(s)	1068
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	4 cut(s)	234, 312, 504, 921
BmsI	GCATC	1 cut(s)	1032
BpiI	GAAGAC	2 cut(s)	3, 775
Bpu10I	CCTNAGC	1 cut(s)	993
BsaBI	GATNNNNATC	1 cut(s)	1046
BsaJI	CCNNGG	3 cut(s)	52, 848, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 899
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	1046
BseBI	CCWGG	4 cut(s)	234, 312, 504, 921
BseDI	CCNNGG	3 cut(s)	52, 848, 920
BseGI	GGATG	4 cut(s)	433, 702, 1003, 1047
BseJI	GATNNNNATC	1 cut(s)	1046
BseLI	CCNNNNNNNGG	2 cut(s)	421, 899
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	984, 989
BseRI	GAGGAG	1 cut(s)	1051
BseXI	GCAGC	2 cut(s)	631, 888
BshFI	GGCC	4 cut(s)	285, 341, 731, 1070
BslI	CCNNNNNNNGG	2 cut(s)	421, 899
BsmAI	GTCTC	2 cut(s)	84, 102
BsnI	GGCC	4 cut(s)	285, 341, 731, 1070
Bsp143I	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
Bsp19I	CCATGG	2 cut(s)	52, 848
BspANI	GGCC	4 cut(s)	285, 341, 731, 1070
BspCNI	CTCAG	2 cut(s)	985, 988
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	224, 237, 407
BspQI	GCTCTTC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	52, 848, 920
BssMI	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
BssT1I	CCWWGG	2 cut(s)	52, 848
Bst2UI	CCWGG	4 cut(s)	234, 312, 504, 921
Bst4CI	ACNGT	3 cut(s)	264, 579, 1024
Bst6I	CTCTTC	2 cut(s)	576, 1028
BstC8I	GCNNGC	2 cut(s)	38, 283
BstDEI	CTNAG	3 cut(s)	692, 975, 993
BstDSI	CCRYGG	2 cut(s)	52, 848
BstF5I	GGATG	4 cut(s)	433, 702, 1003, 1047
BstKTI	GATC	6 cut(s)	232, 332, 402, 454, 469, 800
BstMAI	GTCTC	2 cut(s)	84, 102
BstMBI	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNI	CCWGG	4 cut(s)	234, 312, 504, 921
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	4 cut(s)	232, 310, 502, 919
BstV1I	GCAGC	2 cut(s)	631, 888
BstV2I	GAAGAC	2 cut(s)	3, 775
BstX2I	RGATCY	2 cut(s)	229, 399
BstXI	CCANNNNNNTGG	3 cut(s)	639, 774, 855
BstYI	RGATCY	2 cut(s)	229, 399
BsuRI	GGCC	4 cut(s)	285, 341, 731, 1070
BtgI	CCRYGG	2 cut(s)	52, 848
BtsCI	GGATG	4 cut(s)	433, 702, 1003, 1047
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	564, 1020
Cac8I	GCNNGC	2 cut(s)	38, 283
Cfr13I	GGNCC	1 cut(s)	1068
Csp6I	GTAC	3 cut(s)	203, 518, 1078
CviAII	CATG	8 cut(s)	53, 112, 244, 289, 484, 595, 733, 849
CviQI	GTAC	3 cut(s)	203, 518, 1078
DdeI	CTNAG	3 cut(s)	692, 975, 993
DpnI	GATC	6 cut(s)	231, 331, 401, 453, 468, 799
DpnII	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
Eam1104I	CTCTTC	2 cut(s)	576, 1028
EarI	CTCTTC	2 cut(s)	576, 1028
Eco130I	CCWWGG	2 cut(s)	52, 848
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	4 cut(s)	232, 310, 502, 919
EcoT14I	CCWWGG	2 cut(s)	52, 848
ErhI	CCWWGG	2 cut(s)	52, 848
FaeI	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	8 cut(s)	52, 111, 243, 288, 483, 594, 732, 848
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	620, 877
FokI	GGATG	4 cut(s)	440, 709, 1010, 1054
Fsp4HI	GCNGC	2 cut(s)	620, 877
FspBI	CTAG	2 cut(s)	362, 936
GluI	GCNGC	2 cut(s)	620, 877
HaeIII	GGCC	4 cut(s)	285, 341, 731, 1070
Hin1II	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	2 cut(s)	34, 945
HinfI	GANTC	6 cut(s)	48, 57, 131, 512, 532, 557
HpaI	GTTAAC	1 cut(s)	582
HphI	GGTGA	3 cut(s)	94, 248, 730
Hpy166II	GTNNAC	3 cut(s)	582, 905, 1012
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	4 cut(s)	173, 227, 367, 809
Hpy8I	GTNNAC	3 cut(s)	582, 905, 1012
HpyAV	CCTTC	3 cut(s)	167, 580, 721
HpyCH4III	ACNGT	3 cut(s)	264, 579, 1024
HpyCH4V	TGCA	4 cut(s)	40, 115, 194, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	3 cut(s)	692, 975, 993
Hsp92II	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
Ksp22I	TGATCA	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	582
Kzo9I	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	2 cut(s)	631, 888
LweI	GCATC	1 cut(s)	1032
MaeI	CTAG	2 cut(s)	362, 936
MaeIII	GTNAC	1 cut(s)	881
MalI	GATC	6 cut(s)	231, 331, 401, 453, 468, 799
MboI	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
MboII	GAAGA	7 cut(s)	3, 57, 358, 563, 775, 946, 1045
MfeI	CAATTG	1 cut(s)	1005
MflI	RGATCY	2 cut(s)	229, 399
MluCI	AATT	4 cut(s)	272, 372, 455, 1005
MlyI	GAGTC	2 cut(s)	51, 526
MnlI	CCTC	9 cut(s)	98, 232, 296, 502, 717, 893, 988, 1029, 1032
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	4 cut(s)	75, 458, 581, 602
MslI	CAYNNNNRTG	2 cut(s)	810, 853
MspA1I	CMGCKG	1 cut(s)	879
MspR9I	CCNGG	4 cut(s)	234, 312, 504, 921
MunI	CAATTG	1 cut(s)	1005
MvaI	CCWGG	4 cut(s)	234, 312, 504, 921
MwoI	GCNNNNNNNGC	1 cut(s)	628
NcoI	CCATGG	2 cut(s)	52, 848
NdeII	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
NlaIII	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	48, 131, 512, 557
PflFI	GACNNNGTC	1 cut(s)	915
PflMI	CCANNNNNTGG	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	621, 878
PleI	GAGTC	2 cut(s)	51, 526
PpsI	GAGTC	2 cut(s)	51, 526
Psp6I	CCWGG	4 cut(s)	232, 310, 502, 919
PspGI	CCWGG	4 cut(s)	232, 310, 502, 919
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	1068
PsuI	RGATCY	2 cut(s)	229, 399
PsyI	GACNNNGTC	1 cut(s)	915
PvuII	CAGCTG	1 cut(s)	879
RsaI	GTAC	3 cut(s)	204, 519, 1079
RsaNI	GTAC	3 cut(s)	203, 518, 1078
RseI	CAYNNNNRTG	2 cut(s)	810, 853
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	4 cut(s)	75, 458, 581, 602
SatI	GCNGC	2 cut(s)	620, 877
Sau3AI	GATC	6 cut(s)	229, 329, 399, 451, 466, 797
Sau96I	GGNCC	1 cut(s)	1068
ScaI	AGTACT	1 cut(s)	204
SchI	GAGTC	2 cut(s)	51, 526
ScrFI	CCNGG	4 cut(s)	234, 312, 504, 921
SfaNI	GCATC	1 cut(s)	1032
SmiMI	CAYNNNNRTG	2 cut(s)	810, 853
Sse9I	AATT	4 cut(s)	272, 372, 455, 1005
SspI	AATATT	2 cut(s)	190, 307
SspMI	CTAG	2 cut(s)	362, 936
StyD4I	CCNGG	4 cut(s)	232, 310, 502, 919
StyI	CCWWGG	2 cut(s)	52, 848
TaaI	ACNGT	3 cut(s)	264, 579, 1024
TasI	AATT	4 cut(s)	272, 372, 455, 1005
TatI	WGTACW	2 cut(s)	202, 1077
TfiI	GAWTC	4 cut(s)	48, 131, 512, 557
Tru1I	TTAA	4 cut(s)	75, 458, 581, 602
Tru9I	TTAA	4 cut(s)	75, 458, 581, 602
TscAI	CASTG	2 cut(s)	571, 1027
TseI	GCWGC	2 cut(s)	619, 876
TspDTI	ATGAA	6 cut(s)	157, 192, 265, 749, 794, 1046
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	2 cut(s)	571, 1027
Tth111I	GACNNNGTC	1 cut(s)	915
Van91I	CCANNNNNTGG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	362, 936
ZrmI	AGTACT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.