Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Reverse (-)

59818140 .. 59823020

Gene Structure 4881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGACAATTTGTTGCTGATTGTACTAGTCAGTAGTACTACCATATTCTTGTCCACAGTACTAATTCTCTCCAGAAACTACTTCAGGTTTAGTCCAGTCTGTTTCAATATCAGATCATCAAAACACAGAAGACTCTCACTTCCTTTAGGCACGCTTGGATGGCCGTTTCTCGGCGAAACCATTGAGTTTGTGTCTTGTGCTTACTCTGATTGCCCCGAGAGCTTCGTCAATAAACGTCGCCATAGGTATGGAAAGGTGTTTAAATCACACATATTTGGGAGTCCAACTATTGTTTCAACAGATGCAGAAGTGAGTAAGTTTGTTCTGCAAAGTGATGCCAAGGCTTTTGTTCCATCTTACCCAAAATCTCTCACAGAGTTGATGGGGAAGTCTTCTATATTGCTCATCAATGGAAGCTTGCAAAGAAGAATCCATGGACTCATAGGAGCTTTCTTTAAGTCTCCACACCTCAAAGCTCAAATCACCAGAGACATGCAGGAGTATGTCCAAGAATCAATGGCAACTTGGAGAGATGACCTTCCCATTTTCATTCAAGATGAAACCAAAAATATTGCATTTCAAGTACTTGTCAAAGCATTGATTAGTCTGGATCCTGGTGAGGACATGGAGTTTCTAAAGAAACAGTTCCAAGAATTCATTGCTGGCCTCATGTCTATACCCATCAATATTCCTGGAAGTAGACTTTACAGATCATTACAGGCCAAGAAGAAAATGGTCAAGCTAGTCCAGAAAATTATACAAGCTAAAAAGGAGAGTGGGATCTCCAATGTTTCCCAAGATGTGGTGGATGTTTTGCTCAATGACACAAGTGATCAATTAACAGATGATCTTATAGCAGATAACATGATTGACATGATGATACCAGGAGAGGATTCAGTACCACTTCTTATAACTCTTGCAATCAAATACCTTTCAGATTCCCCCACTGCTCTTCAACAGTTAACGAAGGAGAACATGGAGTTAAAAACACTCAAAGAGCAGCTTGGAGAGCCATTGTGTTGGAGTGATTACTTATCCTTACCATTTACACATAACGTGATTACAGAAACTCTAAGGATGGGAAACATCATAAATGGGGTGATGAGGAAGGCCATGAAAGATGTTGAGATAAAAGGTTATCAAATACCAAAGGGGTGGTGTGTCTTCACATACTTTAGATCAGTTCATCTTGATGAGAATAACTATGATGGGGCTTATGACTTCAATCCATGGAGATGGCAAGACAAAGACATAAGCAGCTGTAACTTCACTCCTTTTGGAGGTGGACAAAGACTTTGTCCTGGGCTTGACCTGGCTAGGCTGGAAGCTTCCATCTTCCTACACCACTTTATCACTCAGTTCAGTTGGGTGGCTGAGGATGACACAATTATAAACTTCCCCACTGTAAGAATGAAGAGGAGGATGCCAATCTGGGTCAAAAGGACAAGGATCGACCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

488

Amino Acids

55.71

Weight (kDa)

8.5

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	49 - 461	9.9e-52	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	911, 1391
AccB7I	CCANNNNNTGG	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	700
AclWI	GGATC	4 cut(s)	605, 618, 788, 1457
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	6 cut(s)	24, 37, 60, 585, 900, 1460
AfiI	CCNNNNNNNGG	3 cut(s)	170, 802, 1280
AgsI	TTSAA	6 cut(s)	106, 297, 554, 581, 956, 1225
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	5 cut(s)	613, 691, 883, 1300, 1311
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	9 cut(s)	222, 417, 449, 476, 742, 764, 1003, 1260, 1328
AluI	AGCT	9 cut(s)	222, 417, 449, 476, 742, 764, 1003, 1260, 1328
Alw26I	GTCTC	2 cut(s)	465, 483
AlwI	GGATC	4 cut(s)	605, 618, 788, 1457
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	4 cut(s)	161, 664, 720, 1110
ApeKI	GCWGC	2 cut(s)	1000, 1257
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	4 cut(s)	1278, 1282, 1310, 1314
Asp700I	GAANNNNTTC	1 cut(s)	644
AsuHPI	GGTGA	3 cut(s)	475, 629, 1111
AvaI	CYCGRG	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	610
BbsI	GAAGAC	3 cut(s)	136, 384, 1156
BbvCI	CCTCAGC	1 cut(s)	1374
BbvI	GCAGC	2 cut(s)	1012, 1269
BccI	CCATC	8 cut(s)	153, 361, 376, 689, 1072, 1202, 1230, 1340
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	5 cut(s)	615, 693, 885, 1302, 1313
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	2 cut(s)	465, 483
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	3 cut(s)	26, 743, 1317
BisI	GCNGC	2 cut(s)	1001, 1258
BlsI	GCNGC	2 cut(s)	1002, 1259
BmcAI	AGTACT	4 cut(s)	37, 60, 585, 1460
Bme1390I	CCNGG	5 cut(s)	615, 693, 885, 1302, 1313
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	5 cut(s)	615, 693, 885, 1302, 1313
BmsI	GCATC	3 cut(s)	292, 325, 1413
BpiI	GAAGAC	3 cut(s)	136, 384, 1156
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	1374
BsaBI	GATNNNNATC	1 cut(s)	1427
BsaJI	CCNNGG	4 cut(s)	339, 433, 1229, 1301
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 802, 1280
Bse1I	ACTGG	2 cut(s)	95, 1456
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	1427
BseBI	CCWGG	5 cut(s)	615, 693, 885, 1302, 1313
BseDI	CCNNGG	4 cut(s)	339, 433, 1229, 1301
BseGI	GGATG	5 cut(s)	164, 814, 1083, 1384, 1428
BseJI	GATNNNNATC	1 cut(s)	1427
BseLI	CCNNNNNNNGG	3 cut(s)	170, 802, 1280
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	1365, 1370
BseNI	ACTGG	2 cut(s)	95, 1456
BseRI	GAGGAG	1 cut(s)	1432
BseXI	GCAGC	2 cut(s)	1012, 1269
BshFI	GGCC	4 cut(s)	163, 666, 722, 1112
BsiHKCI	CYCGRG	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	170, 802, 1280
BsmAI	GTCTC	2 cut(s)	465, 483
BsnI	GGCC	4 cut(s)	163, 666, 722, 1112
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
Bsp19I	CCATGG	2 cut(s)	433, 1229
BspANI	GGCC	4 cut(s)	163, 666, 722, 1112
BspCNI	CTCAG	2 cut(s)	1366, 1369
BspLI	GGNNCC	1 cut(s)	612
BspPI	GGATC	4 cut(s)	605, 618, 788, 1457
BspQI	GCTCTTC	1 cut(s)	957
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	95, 1456
BssECI	CCNNGG	4 cut(s)	339, 433, 1229, 1301
BssMI	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
BssT1I	CCWWGG	3 cut(s)	339, 433, 1229
Bst2UI	CCWGG	5 cut(s)	615, 693, 885, 1302, 1313
Bst4CI	ACNGT	4 cut(s)	58, 645, 960, 1405
Bst6I	CTCTTC	2 cut(s)	957, 1409
BstC8I	GCNNGC	3 cut(s)	152, 419, 664
BstDEI	CTNAG	3 cut(s)	1073, 1356, 1374
BstDSI	CCRYGG	2 cut(s)	433, 1229
BstENI	CCTNNNNNAGG	1 cut(s)	1278
BstF5I	GGATG	5 cut(s)	164, 814, 1083, 1384, 1428
BstKTI	GATC	8 cut(s)	116, 613, 713, 783, 835, 850, 1181, 1452
BstMAI	GTCTC	2 cut(s)	465, 483
BstMBI	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 219, 1009
BstNI	CCWGG	5 cut(s)	615, 693, 885, 1302, 1313
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	5 cut(s)	613, 691, 883, 1300, 1311
BstV1I	GCAGC	2 cut(s)	1012, 1269
BstV2I	GAAGAC	3 cut(s)	136, 384, 1156
BstX2I	RGATCY	2 cut(s)	610, 780
BstXI	CCANNNNNNTGG	4 cut(s)	248, 1020, 1155, 1236
BstYI	RGATCY	2 cut(s)	610, 780
BsuRI	GGCC	4 cut(s)	163, 666, 722, 1112
BtgI	CCRYGG	2 cut(s)	433, 1229
BtsCI	GGATG	5 cut(s)	164, 814, 1083, 1384, 1428
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	2 cut(s)	945, 1401
Cac8I	GCNNGC	3 cut(s)	152, 419, 664
Csp6I	GTAC	6 cut(s)	23, 36, 59, 584, 899, 1459
CviAII	CATG	9 cut(s)	434, 493, 625, 670, 865, 874, 976, 1114, 1230
CviQI	GTAC	6 cut(s)	23, 36, 59, 584, 899, 1459
DdeI	CTNAG	3 cut(s)	1073, 1356, 1374
DpnI	GATC	8 cut(s)	115, 612, 712, 782, 834, 849, 1180, 1451
DpnII	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
DraI	TTTAAA	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	957, 1409
EarI	CTCTTC	2 cut(s)	957, 1409
Eco130I	CCWWGG	3 cut(s)	339, 433, 1229
Eco57I	CTGAAG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	1278
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	5 cut(s)	613, 691, 883, 1300, 1311
EcoT14I	CCWWGG	3 cut(s)	339, 433, 1229
ErhI	CCWWGG	3 cut(s)	339, 433, 1229
FaeI	CATG	9 cut(s)	437, 496, 628, 673, 868, 877, 979, 1117, 1233
FalI	AAGNNNNNCTT	2 cut(s)	987, 1019
FatI	CATG	9 cut(s)	433, 492, 624, 669, 864, 873, 975, 1113, 1229
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	1001, 1258
FokI	GGATG	5 cut(s)	171, 821, 1090, 1391, 1435
Fsp4HI	GCNGC	2 cut(s)	1001, 1258
FspBI	CTAG	3 cut(s)	26, 743, 1317
GluI	GCNGC	2 cut(s)	1001, 1258
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	163, 666, 722, 1112
Hin1II	CATG	9 cut(s)	437, 496, 628, 673, 868, 877, 979, 1117, 1233
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HindIII	AAGCTT	2 cut(s)	415, 1326
HinfI	GANTC	7 cut(s)	132, 280, 429, 438, 512, 893, 938
HpaI	GTTAAC	1 cut(s)	963
HphI	GGTGA	3 cut(s)	475, 629, 1111
Hpy166II	GTNNAC	4 cut(s)	54, 701, 963, 1286
Hpy188I	TCNGA	3 cut(s)	113, 208, 937
Hpy188III	TCNNGA	5 cut(s)	72, 554, 608, 748, 1190
Hpy8I	GTNNAC	4 cut(s)	54, 701, 963, 1286
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	548, 961, 1102
HpyCH4III	ACNGT	4 cut(s)	58, 645, 960, 1405
HpyCH4IV	ACGT	2 cut(s)	235, 1056
HpyCH4V	TGCA	6 cut(s)	305, 328, 421, 496, 575, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 219, 1009
HpyF3I	CTNAG	3 cut(s)	1073, 1356, 1374
HpySE526I	ACGT	2 cut(s)	235, 1056
Hsp92II	CATG	9 cut(s)	437, 496, 628, 673, 868, 877, 979, 1117, 1233
Ksp22I	TGATCA	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	963
Kzo9I	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
LguI	GCTCTTC	1 cut(s)	957
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	2 cut(s)	1012, 1269
LweI	GCATC	3 cut(s)	292, 325, 1413
MaeI	CTAG	3 cut(s)	26, 743, 1317
MaeII	ACGT	2 cut(s)	235, 1056
MaeIII	GTNAC	1 cut(s)	1262
MalI	GATC	8 cut(s)	115, 612, 712, 782, 834, 849, 1180, 1451
MboI	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
MboII	GAAGA	8 cut(s)	141, 384, 438, 739, 944, 1156, 1327, 1426
MflI	RGATCY	2 cut(s)	610, 780
MluCI	AATT	6 cut(s)	7, 63, 653, 753, 836, 1386
MlyI	GAGTC	3 cut(s)	126, 289, 432
MmeI	TCCRAC	2 cut(s)	308, 1001
MnlI	CCTC	9 cut(s)	479, 613, 677, 883, 1098, 1274, 1369, 1410, 1413
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	5 cut(s)	261, 456, 839, 962, 983
MslI	CAYNNNNRTG	3 cut(s)	246, 1191, 1234
MspA1I	CMGCKG	1 cut(s)	1260
MspR9I	CCNGG	5 cut(s)	615, 693, 885, 1302, 1313
MvaI	CCWGG	5 cut(s)	615, 693, 885, 1302, 1313
MwoI	GCNNNNNNNGC	3 cut(s)	160, 219, 1009
NcoI	CCATGG	2 cut(s)	433, 1229
NdeII	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
NlaIII	CATG	9 cut(s)	437, 496, 628, 673, 868, 877, 979, 1117, 1233
NlaIV	GGNNCC	1 cut(s)	612
NmeAIII	GCCGAG	1 cut(s)	150
NspI	RCATGY	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	4 cut(s)	429, 512, 893, 938
PflFI	GACNNNGTC	1 cut(s)	1296
PflMI	CCANNNNNTGG	1 cut(s)	802
PfoI	TCCNGGA	1 cut(s)	691
PkrI	GCNGC	2 cut(s)	1002, 1259
PleI	GAGTC	3 cut(s)	126, 288, 432
PpsI	GAGTC	3 cut(s)	126, 288, 432
PsiI	TTATAA	2 cut(s)	911, 1391
Psp6I	CCWGG	5 cut(s)	613, 691, 883, 1300, 1311
PspGI	CCWGG	5 cut(s)	613, 691, 883, 1300, 1311
PspN4I	GGNNCC	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	610, 780
PsyI	GACNNNGTC	1 cut(s)	1296
PvuII	CAGCTG	1 cut(s)	1260
RsaI	GTAC	6 cut(s)	24, 37, 60, 585, 900, 1460
RsaNI	GTAC	6 cut(s)	23, 36, 59, 584, 899, 1459
RseI	CAYNNNNRTG	3 cut(s)	246, 1191, 1234
SapI	GCTCTTC	1 cut(s)	957
SaqAI	TTAA	5 cut(s)	261, 456, 839, 962, 983
SatI	GCNGC	2 cut(s)	1001, 1258
Sau3AI	GATC	8 cut(s)	113, 610, 710, 780, 832, 847, 1178, 1449
ScaI	AGTACT	4 cut(s)	37, 60, 585, 1460
SchI	GAGTC	3 cut(s)	126, 289, 432
ScrFI	CCNGG	5 cut(s)	615, 693, 885, 1302, 1313
SfaNI	GCATC	3 cut(s)	292, 325, 1413
SmiMI	CAYNNNNRTG	3 cut(s)	246, 1191, 1234
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	6 cut(s)	7, 63, 653, 753, 836, 1386
SspI	AATATT	2 cut(s)	571, 688
SspMI	CTAG	3 cut(s)	26, 743, 1317
StyD4I	CCNGG	5 cut(s)	613, 691, 883, 1300, 1311
StyI	CCWWGG	3 cut(s)	339, 433, 1229
TaaI	ACNGT	4 cut(s)	58, 645, 960, 1405
TaiI	ACGT	2 cut(s)	238, 1059
TaqI	TCGA	1 cut(s)	1452
TasI	AATT	6 cut(s)	7, 63, 653, 753, 836, 1386
TatI	WGTACW	5 cut(s)	22, 35, 58, 583, 1458
TfiI	GAWTC	4 cut(s)	429, 512, 893, 938
Tru1I	TTAA	5 cut(s)	261, 456, 839, 962, 983
Tru9I	TTAA	5 cut(s)	261, 456, 839, 962, 983
TscAI	CASTG	2 cut(s)	952, 1408
TseI	GCWGC	2 cut(s)	1000, 1257
TspDTI	ATGAA	6 cut(s)	538, 573, 646, 1130, 1175, 1427
TspRI	CASTG	2 cut(s)	952, 1408
Tth111I	GACNNNGTC	1 cut(s)	1296
Van91I	CCANNNNNTGG	1 cut(s)	802
XagI	CCTNNNNNAGG	1 cut(s)	1278
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XmiI	GTMKAC	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	3 cut(s)	26, 743, 1317
ZrmI	AGTACT	4 cut(s)	37, 60, 585, 1460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.