Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Reverse (-)

4497893 .. 4500920

Gene Structure 3028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGACACTTCTTCTTCACTTTTGTTCTTCTCCTTCTTCTTCTTTATCATCATCGTCATCTTCAACAAGATCAACGGTCTCAGATCATCCCCAGCTTCAAAGAAAAAACTTAATGATCATCATGTTACATCCCAGAGTCACGGACCAAAGTTTCCACACGGAAGCTTGGGATGGCCCGTCATCGGTGAAACCATCGAGTTCGTCTCTTCTGCTTACTCAGACCGTCCTGAGAGTTTCATGGACAAGCGTCGTCTCATGTATGGGAGAGTGTTTAAGTCGCATATTTTTGGAACGGCGACGATCGTGTCGACGGATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACAGCTTTCGTGCCGTTTTACCCAAAAACGGTAAGGGAGCTAATGGGAAAATCGTCGATACTTCTTATCAACGGGAGTTTACATAGACGGTTCCATGGATTAGTCGGTTCTTTCTTAAAGTCGCCACTTCTCAAAGCTCAAATCGTTAGAGACATGCACAAGTTTTTGTCGGAATCCATGGATCTATGGTCCGAGGACCAACCTGTGCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAGGCATTGATAAGTGTAGAGAAAGGAGAAGATTTAGAAGAGCTAAAGAGAGAGTTTGAAAATTTCATATCAGGACTCATGTCATTACCAATTAACTTCCCTGGAACGCAACTCCATAGATCTCTCCAAGCTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGGAAAACAAAGAACAAGGAGGAAGATGATGTTATTGCAAAGGATGTTGTGGATGTGTTGCTTAAGGACTCAAGTGAACATTTAACTCACAATTTGATTGCTAACAATATGATCGACATGATGATCCCTGGCCACGATTCTGTCCCTGTCCTCATTACCCTTGCCGTCAAATTCCTCTCTGATTCTCCTGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAGGAATTGACAGGAGAGCCACTATATTGGAATGACTACTTGTCGTTACCTTTTACACAAAAGGTGATTACAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATGAAAGATGTTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGTTTCTTGGCCTATCTCAGATCAGTTCATCTTGATAAGCTTTATTATGAGTCTCCCTACAAATTTAATCCCTGGAGATGGCAAGAAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTGTGCCCTGGTCTCGATTTGGCTCGTCTTGAAACTTCAGTTTTTCTTCACCATCTTGTCACTCGCTTCAGATGGATAGCAGAAGAAGACACAATCATAAACTTCCCAACGGTGCATATGAAGAACAAATTACCCATTTGGATCAAAAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

491

Amino Acids

56.15

Weight (kDa)

9.26

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	52 - 464	1.1e-48	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1118
AasI	GACNNNNNNGTC	1 cut(s)	304
AatII	GACGTC	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	308
AclWI	GGATC	3 cut(s)	540, 901, 1469
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	3 cut(s)	664, 953, 1247
AcuI	CTGAAG	3 cut(s)	339, 1341, 1372
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	4 cut(s)	182, 379, 1263, 1307
AflII	CTTAAG	1 cut(s)	845
AgsI	TTSAA	8 cut(s)	64, 99, 592, 662, 761, 1021, 1154, 1352
AhdI	GACNNNNNGTC	1 cut(s)	1060
AjnI	CCWGG	4 cut(s)	703, 910, 1256, 1327
AluBI	AGCT	9 cut(s)	95, 165, 356, 391, 488, 646, 734, 1009, 1225
AluI	AGCT	9 cut(s)	95, 165, 356, 391, 488, 646, 734, 1009, 1225
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	8 cut(s)	83, 208, 257, 495, 577, 1088, 1242, 1337
AlwI	GGATC	3 cut(s)	540, 901, 1469
AoxI	GGCC	3 cut(s)	173, 913, 1194
ApeKI	GCWGC	1 cut(s)	974
ApoI	RAATTY	3 cut(s)	664, 953, 1247
AspS9I	GGNCC	4 cut(s)	143, 174, 540, 547
AsuHPI	GGTGA	4 cut(s)	197, 760, 1096, 1361
AvaII	GGWCC	3 cut(s)	143, 540, 547
BaeGI	GKGCMC	1 cut(s)	1328
BalI	TGGCCA	1 cut(s)	915
BauI	CACGAG	1 cut(s)	1285
BbsI	GAAGAC	1 cut(s)	1413
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	961
BccI	CCATC	6 cut(s)	165, 200, 1176, 1257, 1380, 1386
BceAI	ACGGC	4 cut(s)	309, 317, 349, 932
BciT130I	CCWGG	4 cut(s)	705, 912, 1258, 1329
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	8 cut(s)	83, 208, 257, 495, 577, 1088, 1242, 1337
BfrI	CTTAAG	1 cut(s)	845
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	1 cut(s)	975
BlsI	GCNGC	1 cut(s)	976
BmcAI	AGTACT	1 cut(s)	597
Bme1390I	CCNGG	4 cut(s)	705, 912, 1258, 1329
Bme18I	GGWCC	3 cut(s)	143, 540, 547
BmeRI	GACNNNNNGTC	1 cut(s)	1060
BmgT120I	GGNCC	4 cut(s)	143, 174, 540, 547
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	4 cut(s)	705, 912, 1258, 1329
BmsI	GCATC	1 cut(s)	304
BoxI	GACNNNNGTC	2 cut(s)	246, 682
BpiI	GAAGAC	1 cut(s)	1413
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	1279
BpuEI	CTTGAG	1 cut(s)	838
BsaHI	GRCGYC	1 cut(s)	570
BsaI	GGTCTC	2 cut(s)	83, 1337
BsaJI	CCNNGG	8 cut(s)	445, 528, 543, 603, 703, 910, 1256, 1327
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 379, 1263, 1307
BseBI	CCWGG	4 cut(s)	705, 912, 1258, 1329
BseDI	CCNNGG	8 cut(s)	445, 528, 543, 603, 703, 910, 1256, 1327
BseGI	GGATG	7 cut(s)	86, 128, 176, 319, 832, 841, 1187
BseLI	CCNNNNNNNGG	4 cut(s)	182, 379, 1263, 1307
BseMII	CTCAG	5 cut(s)	94, 219, 231, 1091, 1216
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	1328
BseXI	GCAGC	1 cut(s)	961
BseYI	CCCAGC	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	175, 915, 1196
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	561
BslFI	GGGAC	2 cut(s)	911, 1289
BslI	CCNNNNNNNGG	4 cut(s)	182, 379, 1263, 1307
BsmAI	GTCTC	8 cut(s)	83, 208, 257, 495, 577, 1088, 1242, 1337
BsmBI	CGTCTC	3 cut(s)	208, 257, 577
BsmFI	GGGAC	2 cut(s)	911, 1289
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	3 cut(s)	175, 915, 1196
Bso31I	GGTCTC	2 cut(s)	83, 1337
Bsp1286I	GDGCHC	2 cut(s)	561, 1328
Bsp19I	CCATGG	2 cut(s)	445, 528
BspANI	GGCC	3 cut(s)	175, 915, 1196
BspCNI	CTCAG	5 cut(s)	93, 220, 230, 1092, 1215
BspLI	GGNNCC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	540, 901, 1469
BspQI	GCTCTTC	1 cut(s)	636
BspTI	CTTAAG	1 cut(s)	845
BspTNI	GGTCTC	2 cut(s)	83, 1337
BssECI	CCNNGG	8 cut(s)	445, 528, 543, 603, 703, 910, 1256, 1327
BssNI	GRCGYC	1 cut(s)	570
BssSI	CACGAG	1 cut(s)	1285
BssT1I	CCWWGG	3 cut(s)	445, 528, 603
Bst2BI	CACGAG	1 cut(s)	1285
Bst2UI	CCWGG	4 cut(s)	705, 912, 1258, 1329
Bst4CI	ACNGT	6 cut(s)	77, 224, 382, 441, 583, 1432
Bst6I	CTCTTC	2 cut(s)	211, 636
BstACI	GRCGYC	1 cut(s)	570
BstAFI	CTTAAG	1 cut(s)	845
BstDEI	CTNAG	6 cut(s)	80, 217, 228, 735, 1100, 1202
BstDSI	CCRYGG	2 cut(s)	445, 528
BstENI	CCTNNNNNAGG	1 cut(s)	1305
BstF5I	GGATG	7 cut(s)	86, 128, 176, 319, 832, 841, 1187
BstMAI	GTCTC	8 cut(s)	83, 208, 257, 495, 577, 1088, 1242, 1337
BstMCI	CGRYCG	1 cut(s)	303
BstNI	CCWGG	4 cut(s)	705, 912, 1258, 1329
BstNSI	RCATGY	1 cut(s)	508
BstPAI	GACNNNNGTC	2 cut(s)	246, 682
BstSCI	CCNGG	4 cut(s)	703, 910, 1256, 1327
BstSLI	GKGCMC	1 cut(s)	1328
BstV1I	GCAGC	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	1413
BstX2I	RGATCY	2 cut(s)	532, 722
BstXI	CCANNNNNNTGG	2 cut(s)	1047, 1182
BstYI	RGATCY	2 cut(s)	532, 722
BsuRI	GGCC	3 cut(s)	175, 915, 1196
BtgI	CCRYGG	2 cut(s)	445, 528
BtgZI	GCGATG	1 cut(s)	1154
BtsCI	GGATG	7 cut(s)	86, 128, 176, 319, 832, 841, 1187
BtsIMutI	CAGTG	1 cut(s)	1097
Cfr13I	GGNCC	4 cut(s)	143, 174, 540, 547
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	596
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	6 cut(s)	80, 217, 228, 735, 1100, 1202
DrdI	GACNNNNNNGTC	1 cut(s)	304
DriI	GACNNNNNGTC	1 cut(s)	1060
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	2 cut(s)	211, 636
Eam1105I	GACNNNNNGTC	1 cut(s)	1060
EarI	CTCTTC	2 cut(s)	211, 636
Eco130I	CCWWGG	3 cut(s)	445, 528, 603
Eco31I	GGTCTC	2 cut(s)	83, 1337
Eco47I	GGWCC	3 cut(s)	143, 540, 547
Eco57I	CTGAAG	3 cut(s)	339, 1341, 1372
EcoNI	CCTNNNNNAGG	1 cut(s)	1305
EcoRII	CCWGG	4 cut(s)	703, 910, 1256, 1327
EcoT14I	CCWWGG	3 cut(s)	445, 528, 603
ErhI	CCWWGG	3 cut(s)	445, 528, 603
Esp3I	CGTCTC	3 cut(s)	208, 257, 577
FaqI	GGGAC	2 cut(s)	911, 1289
FauNDI	CATATG	1 cut(s)	1437
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	975
FokI	GGATG	7 cut(s)	73, 115, 183, 326, 839, 848, 1194
Fsp4HI	GCNGC	1 cut(s)	975
GluI	GCNGC	1 cut(s)	975
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	1279
HaeIII	GGCC	3 cut(s)	175, 915, 1196
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	570
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	2 cut(s)	163, 1223
HinfI	GANTC	9 cut(s)	136, 347, 524, 678, 765, 851, 920, 965, 1235
HphI	GGTGA	4 cut(s)	197, 760, 1096, 1361
Hpy166II	GTNNAC	4 cut(s)	309, 325, 431, 860
Hpy188I	TCNGA	8 cut(s)	83, 220, 523, 544, 964, 1205, 1317, 1391
Hpy188III	TCNNGA	5 cut(s)	227, 675, 1217, 1334, 1349
Hpy8I	GTNNAC	4 cut(s)	309, 325, 431, 860
Hpy99I	CGWCG	4 cut(s)	252, 301, 313, 409
HpyAV	CCTTC	3 cut(s)	43, 767, 1015
HpyCH4III	ACNGT	6 cut(s)	77, 224, 382, 441, 583, 1432
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	4 cut(s)	508, 587, 821, 1435
HpyF3I	CTNAG	6 cut(s)	80, 217, 228, 735, 1100, 1202
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	2 cut(s)	388, 564
Lsp1109I	GCAGC	1 cut(s)	961
LweI	GCATC	1 cut(s)	304
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	4 cut(s)	124, 137, 1065, 1378
MflI	RGATCY	2 cut(s)	532, 722
MhlI	GDGCHC	2 cut(s)	561, 1328
MlsI	TGGCCA	1 cut(s)	915
MluCI	AATT	9 cut(s)	664, 693, 780, 874, 953, 1025, 1119, 1247, 1448
MluNI	TGGCCA	1 cut(s)	915
MlyI	GAGTC	5 cut(s)	145, 341, 672, 845, 1244
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	7 cut(s)	538, 572, 796, 944, 968, 989, 1301
Mox20I	TGGCCA	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	7 cut(s)	111, 273, 467, 696, 846, 866, 1251
Msp20I	TGGCCA	1 cut(s)	915
MspCI	CTTAAG	1 cut(s)	845
MspR9I	CCNGG	4 cut(s)	705, 912, 1258, 1329
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	4 cut(s)	705, 912, 1258, 1329
NcoI	CCATGG	2 cut(s)	445, 528
NdeI	CATATG	1 cut(s)	1437
NlaIV	GGNNCC	1 cut(s)	443
NmuCI	GTSAC	2 cut(s)	137, 1378
NspI	RCATGY	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	4 cut(s)	524, 765, 920, 965
PkrI	GCNGC	1 cut(s)	976
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	5 cut(s)	144, 341, 672, 845, 1243
PpsI	GAGTC	5 cut(s)	144, 341, 672, 845, 1243
PshAI	GACNNNNGTC	2 cut(s)	246, 682
PsiI	TTATAA	1 cut(s)	1118
Psp6I	CCWGG	4 cut(s)	703, 910, 1256, 1327
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	4 cut(s)	703, 910, 1256, 1327
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	4 cut(s)	143, 174, 540, 547
PsuI	RGATCY	2 cut(s)	532, 722
PvuI	CGATCG	1 cut(s)	303
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
SalI	GTCGAC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	7 cut(s)	111, 273, 467, 696, 846, 866, 1251
SatI	GCNGC	1 cut(s)	975
Sau96I	GGNCC	4 cut(s)	143, 174, 540, 547
ScaI	AGTACT	1 cut(s)	597
SchI	GAGTC	5 cut(s)	145, 341, 672, 845, 1244
ScrFI	CCNGG	4 cut(s)	705, 912, 1258, 1329
SduI	GDGCHC	2 cut(s)	561, 1328
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	3 cut(s)	143, 540, 547
SmlI	CTYRAG	2 cut(s)	845, 853
SmoI	CTYRAG	2 cut(s)	845, 853
Sse9I	AATT	9 cut(s)	664, 693, 780, 874, 953, 1025, 1119, 1247, 1448
StyD4I	CCNGG	4 cut(s)	703, 910, 1256, 1327
StyI	CCWWGG	3 cut(s)	445, 528, 603
TaaI	ACNGT	6 cut(s)	77, 224, 382, 441, 583, 1432
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	6 cut(s)	195, 308, 350, 407, 897, 1335
TasI	AATT	9 cut(s)	664, 693, 780, 874, 953, 1025, 1119, 1247, 1448
TatI	WGTACW	1 cut(s)	595
TfiI	GAWTC	4 cut(s)	524, 765, 920, 965
Tru1I	TTAA	7 cut(s)	111, 273, 467, 696, 846, 866, 1251
Tru9I	TTAA	7 cut(s)	111, 273, 467, 696, 846, 866, 1251
TscAI	CASTG	1 cut(s)	1104
TseFI	GTSAC	2 cut(s)	137, 1378
TseI	GCWGC	1 cut(s)	974
Tsp45I	GTSAC	2 cut(s)	137, 1378
TspDTI	ATGAA	7 cut(s)	226, 658, 1019, 1157, 1202, 1295, 1454
TspGWI	ACGGA	4 cut(s)	156, 174, 326, 1007
TspRI	CASTG	1 cut(s)	1104
Vha464I	CTTAAG	1 cut(s)	845
VpaK11BI	GGWCC	3 cut(s)	143, 540, 547
XagI	CCTNNNNNAGG	1 cut(s)	1305
XapI	RAATTY	3 cut(s)	664, 953, 1247
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	308
ZraI	GACGTC	1 cut(s)	571
ZrmI	AGTACT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.