Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Forward (+)

25801980 .. 25806384

Gene Structure 4405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGACAATTTGTTGCTGACTGTACTAGTCTGTAGTACTACCATATTCTTGTCCACAGCACTAATTCTCTCCAGAAACTACTTCAGGTTTAGTCCAGTCTGTTTCAATATCAGATCATCAAAACACAGAAGACTCTCACTTCCTTTAGGCACTCTTGGATGGCCGTTTCTCGGCGAAACCATTGAGTTTGTGTCTTGTGCTTACTCTGATTGCCCCGAGAGCTTCATGAATAAACGTCGTCATAGGTATGGAAAGGTGTTTAAATCACACATATTTGGGAGTCCAACTATTGTTTCAACAGATGCAGAAGTGAGTAAGTTTGTTCTGCAAAGTGATGCCAAGGCTTTTGTTCCATCTTACCCAAAATCTCTCACAGAGTTGATGGGGAAGTCTTCTATATTGCTCATCAATGGAAGCTTGCAAAGAAGAATCCATGGACTCATAGGAGCTTTCTTTAAGTCTCCACACCTCAAAGCTCAAATCACCAGAGACATGCAGAAGTATGTCCAAGAATCAATGGCAACTTGGAGAGATGACCTTCCCATTTTCATTCAAGATGAAACCAAAAATGCCAAGAAGAAAATGGTCAAGCTAGTCCAGAAAATTATACAAGCTAAAAAGGAGAGTGGGATCTCCAATGTTTCCCAAGATGTGGTGGATGTTTTACTTAATGACACAAGTGATCAATTAACAGATGATCTTATAGCAGATAACATGATTGACATGATGATACCAGGAGAGGATTCAGTACCACTTCTTATGACTCTTGCAATCAAATACCTTTCAGATTCCCCCACTGCTCTTCAACAGTTAACGAAGGAGAACATGGAGTTAAAAACACTCAAAGAGCAGCTTGGAGAGCCATTGTGTTGGAGTGATTACTTATCCTTACCATTTACACATAATGTGATTACAGAAACTCTAAGGATGGGAAACATCATAAATGGGGTGATGAGGAAGGCCATGAAAGATGTTGAGATAAAAGGCTATCAAATACCAAAGGGGTGGTGTGTCTTCACATACTTTAGATCAGTTCATCTTGATGAGAATAACTATGATGGGGCTTATGACTTCAATCCATGGAGATGGCAAGACAAAGACATAAGCAGCTGTAACTTCACTCCTTTTGGAGGTGGACAAAGACTTTGTCCTGGGCTTGACTTGGCTAGGCTGGAAGCTTCCATCTTCCTACACCACTTTATCACTCAGTTCAGTTGGATGGCTGAGGATGACACAATTGTAAACTTCCCCACTGTAAGAATGAAGAGGAGGATGCCAGTCTGGGTCAAAAGGAGAAGGGTCGACCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

437

Amino Acids

50.14

Weight (kDa)

8.84

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	49 - 176	8.1e-06	Cytochrome P450
p450	PF00067	181 - 412	2.3e-43	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccI	GTMKAC	1 cut(s)	1302
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	4 cut(s)	24, 37, 750, 1310
AfiI	CCNNNNNNNGG	3 cut(s)	170, 652, 1130
AgsI	TTSAA	5 cut(s)	106, 297, 554, 806, 1075
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	733, 1150
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	9 cut(s)	222, 417, 449, 476, 592, 614, 853, 1110, 1178
AluI	AGCT	9 cut(s)	222, 417, 449, 476, 592, 614, 853, 1110, 1178
Alw26I	GTCTC	2 cut(s)	465, 483
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	161, 960
ApeKI	GCWGC	2 cut(s)	850, 1107
ArsI	GACNNNNNNTTYG	4 cut(s)	1128, 1132, 1160, 1164
AsuHPI	GGTGA	2 cut(s)	475, 961
AvaI	CYCGRG	1 cut(s)	215
BbsI	GAAGAC	3 cut(s)	136, 384, 1006
BbvCI	CCTCAGC	1 cut(s)	1224
BbvI	GCAGC	2 cut(s)	862, 1119
BccI	CCATC	8 cut(s)	153, 361, 376, 922, 1052, 1080, 1190, 1213
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	735, 1152
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	465, 483
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	3 cut(s)	26, 593, 1167
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	2 cut(s)	851, 1108
BlsI	GCNGC	2 cut(s)	852, 1109
BmcAI	AGTACT	2 cut(s)	37, 1310
Bme1390I	CCNGG	2 cut(s)	735, 1152
BmeT110I	CYCGRG	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	735, 1152
BmsI	GCATC	3 cut(s)	292, 325, 1263
BpiI	GAAGAC	3 cut(s)	136, 384, 1006
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	1224
BsaJI	CCNNGG	4 cut(s)	339, 433, 1079, 1151
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 652, 1130
Bse1I	ACTGG	3 cut(s)	95, 1277, 1306
BseBI	CCWGG	2 cut(s)	735, 1152
BseDI	CCNNGG	4 cut(s)	339, 433, 1079, 1151
BseGI	GGATG	6 cut(s)	164, 664, 933, 1224, 1234, 1278
BseLI	CCNNNNNNNGG	3 cut(s)	170, 652, 1130
BseMII	CTCAG	2 cut(s)	1215, 1220
BseNI	ACTGG	3 cut(s)	95, 1277, 1306
BseRI	GAGGAG	1 cut(s)	1282
BseXI	GCAGC	2 cut(s)	862, 1119
BshFI	GGCC	2 cut(s)	163, 962
BsiHKCI	CYCGRG	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	170, 652, 1130
BsmAI	GTCTC	2 cut(s)	465, 483
BsnI	GGCC	2 cut(s)	163, 962
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	5 cut(s)	113, 630, 682, 697, 1028
Bsp19I	CCATGG	2 cut(s)	433, 1079
BspANI	GGCC	2 cut(s)	163, 962
BspCNI	CTCAG	2 cut(s)	1216, 1219
BspHI	TCATGA	1 cut(s)	225
BspPI	GGATC	1 cut(s)	638
BspQI	GCTCTTC	1 cut(s)	807
BsrI	ACTGG	3 cut(s)	95, 1277, 1306
BssECI	CCNNGG	4 cut(s)	339, 433, 1079, 1151
BssMI	GATC	5 cut(s)	113, 630, 682, 697, 1028
BssT1I	CCWWGG	3 cut(s)	339, 433, 1079
Bst2UI	CCWGG	2 cut(s)	735, 1152
Bst4CI	ACNGT	3 cut(s)	22, 810, 1255
Bst6I	CTCTTC	2 cut(s)	807, 1259
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	3 cut(s)	923, 1206, 1224
BstDSI	CCRYGG	2 cut(s)	433, 1079
BstENI	CCTNNNNNAGG	1 cut(s)	1128
BstF5I	GGATG	6 cut(s)	164, 664, 933, 1224, 1234, 1278
BstKTI	GATC	5 cut(s)	116, 633, 685, 700, 1031
BstMAI	GTCTC	2 cut(s)	465, 483
BstMBI	GATC	5 cut(s)	113, 630, 682, 697, 1028
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 859
BstNI	CCWGG	2 cut(s)	735, 1152
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	733, 1150
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	862, 1119
BstV2I	GAAGAC	3 cut(s)	136, 384, 1006
BstX2I	RGATCY	1 cut(s)	630
BstXI	CCANNNNNNTGG	3 cut(s)	870, 1005, 1086
BstYI	RGATCY	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	163, 962
BtgI	CCRYGG	2 cut(s)	433, 1079
BtsCI	GGATG	6 cut(s)	164, 664, 933, 1224, 1234, 1278
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	2 cut(s)	795, 1251
Cac8I	GCNNGC	1 cut(s)	419
CciI	TCATGA	1 cut(s)	225
Csp6I	GTAC	4 cut(s)	23, 36, 749, 1309
CviAII	CATG	8 cut(s)	226, 434, 493, 715, 724, 826, 964, 1080
CviQI	GTAC	4 cut(s)	23, 36, 749, 1309
DdeI	CTNAG	3 cut(s)	923, 1206, 1224
DpnI	GATC	5 cut(s)	115, 632, 684, 699, 1030
DpnII	GATC	5 cut(s)	113, 630, 682, 697, 1028
DraI	TTTAAA	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	807, 1259
EarI	CTCTTC	2 cut(s)	807, 1259
Eco130I	CCWWGG	3 cut(s)	339, 433, 1079
Eco57I	CTGAAG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	1128
EcoRII	CCWGG	2 cut(s)	733, 1150
EcoT14I	CCWWGG	3 cut(s)	339, 433, 1079
ErhI	CCWWGG	3 cut(s)	339, 433, 1079
FaeI	CATG	8 cut(s)	229, 437, 496, 718, 727, 829, 967, 1083
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FatI	CATG	8 cut(s)	225, 433, 492, 714, 723, 825, 963, 1079
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	1302
Fnu4HI	GCNGC	2 cut(s)	851, 1108
FokI	GGATG	6 cut(s)	171, 671, 940, 1231, 1241, 1285
Fsp4HI	GCNGC	2 cut(s)	851, 1108
FspBI	CTAG	3 cut(s)	26, 593, 1167
GluI	GCNGC	2 cut(s)	851, 1108
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	163, 962
Hin1II	CATG	8 cut(s)	229, 437, 496, 718, 727, 829, 967, 1083
HincII	GTYRAC	2 cut(s)	813, 1303
HindII	GTYRAC	2 cut(s)	813, 1303
HindIII	AAGCTT	2 cut(s)	415, 1176
HinfI	GANTC	8 cut(s)	132, 280, 429, 438, 512, 743, 763, 788
HpaI	GTTAAC	1 cut(s)	813
HphI	GGTGA	2 cut(s)	475, 961
Hpy166II	GTNNAC	5 cut(s)	54, 813, 1136, 1243, 1303
Hpy188I	TCNGA	3 cut(s)	113, 208, 787
Hpy188III	TCNNGA	5 cut(s)	72, 226, 554, 598, 1040
Hpy8I	GTNNAC	5 cut(s)	54, 813, 1136, 1243, 1303
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	4 cut(s)	548, 811, 952, 1290
HpyCH4III	ACNGT	3 cut(s)	22, 810, 1255
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	305, 328, 421, 496, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 859
HpyF3I	CTNAG	3 cut(s)	923, 1206, 1224
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	8 cut(s)	229, 437, 496, 718, 727, 829, 967, 1083
Ksp22I	TGATCA	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	813
Kzo9I	GATC	5 cut(s)	113, 630, 682, 697, 1028
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	2 cut(s)	862, 1119
LweI	GCATC	3 cut(s)	292, 325, 1263
MaeI	CTAG	3 cut(s)	26, 593, 1167
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	1112
MalI	GATC	5 cut(s)	115, 632, 684, 699, 1030
MboI	GATC	5 cut(s)	113, 630, 682, 697, 1028
MboII	GAAGA	8 cut(s)	141, 384, 438, 589, 794, 1006, 1177, 1276
MfeI	CAATTG	1 cut(s)	1236
MflI	RGATCY	1 cut(s)	630
MluCI	AATT	5 cut(s)	7, 63, 603, 686, 1236
MlyI	GAGTC	4 cut(s)	126, 289, 432, 757
MmeI	TCCRAC	3 cut(s)	308, 851, 1196
MnlI	CCTC	7 cut(s)	479, 733, 948, 1124, 1219, 1260, 1263
MseI	TTAA	6 cut(s)	261, 456, 669, 689, 812, 833
MslI	CAYNNNNRTG	3 cut(s)	246, 1041, 1084
MspA1I	CMGCKG	1 cut(s)	1110
MspR9I	CCNGG	2 cut(s)	735, 1152
MunI	CAATTG	1 cut(s)	1236
MvaI	CCWGG	2 cut(s)	735, 1152
MwoI	GCNNNNNNNGC	2 cut(s)	219, 859
NcoI	CCATGG	2 cut(s)	433, 1079
NdeII	GATC	5 cut(s)	113, 630, 682, 697, 1028
NlaIII	CATG	8 cut(s)	229, 437, 496, 718, 727, 829, 967, 1083
NmeAIII	GCCGAG	1 cut(s)	150
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	807
PfeI	GAWTC	4 cut(s)	429, 512, 743, 788
PflFI	GACNNNGTC	1 cut(s)	1146
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	2 cut(s)	852, 1109
PleI	GAGTC	4 cut(s)	126, 288, 432, 757
PpsI	GAGTC	4 cut(s)	126, 288, 432, 757
Psp6I	CCWGG	2 cut(s)	733, 1150
PspGI	CCWGG	2 cut(s)	733, 1150
PsuI	RGATCY	1 cut(s)	630
PsyI	GACNNNGTC	1 cut(s)	1146
PvuII	CAGCTG	1 cut(s)	1110
RsaI	GTAC	4 cut(s)	24, 37, 750, 1310
RsaNI	GTAC	4 cut(s)	23, 36, 749, 1309
RseI	CAYNNNNRTG	3 cut(s)	246, 1041, 1084
SalI	GTCGAC	1 cut(s)	1301
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	6 cut(s)	261, 456, 669, 689, 812, 833
SatI	GCNGC	2 cut(s)	851, 1108
Sau3AI	GATC	5 cut(s)	113, 630, 682, 697, 1028
ScaI	AGTACT	2 cut(s)	37, 1310
SchI	GAGTC	4 cut(s)	126, 289, 432, 757
ScrFI	CCNGG	2 cut(s)	735, 1152
SfaNI	GCATC	3 cut(s)	292, 325, 1263
SfcI	CTRYAG	1 cut(s)	31
SmiMI	CAYNNNNRTG	3 cut(s)	246, 1041, 1084
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	5 cut(s)	7, 63, 603, 686, 1236
SspMI	CTAG	3 cut(s)	26, 593, 1167
StyD4I	CCNGG	2 cut(s)	733, 1150
StyI	CCWWGG	3 cut(s)	339, 433, 1079
TaaI	ACNGT	3 cut(s)	22, 810, 1255
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	1302
TasI	AATT	5 cut(s)	7, 63, 603, 686, 1236
TatI	WGTACW	3 cut(s)	22, 35, 1308
TfiI	GAWTC	4 cut(s)	429, 512, 743, 788
Tru1I	TTAA	6 cut(s)	261, 456, 669, 689, 812, 833
Tru9I	TTAA	6 cut(s)	261, 456, 669, 689, 812, 833
TscAI	CASTG	2 cut(s)	802, 1258
TseI	GCWGC	2 cut(s)	850, 1107
TspDTI	ATGAA	7 cut(s)	214, 242, 538, 573, 980, 1025, 1277
TspRI	CASTG	2 cut(s)	802, 1258
Tth111I	GACNNNGTC	1 cut(s)	1146
Van91I	CCANNNNNTGG	1 cut(s)	652
XagI	CCTNNNNNAGG	1 cut(s)	1128
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	1302
XspI	CTAG	3 cut(s)	26, 593, 1167
ZrmI	AGTACT	2 cut(s)	37, 1310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.