Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Forward (+)

9245431 .. 9249144

Gene Structure 3714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACTCTTGCAATCAAATACCTCTCAGACTCCCCCACTGCTCTCCAACAATTAACTGAGGAGAACATGAAGTTAAAAGCTCTGAAAGATGAGCTTGGAGAGCCACTGTGTTGGAGTGATTACTTGTCCTTACCATTTACACAAAATGTGATCACAGAAACCCTAAGGATGGGAAACATCATAACTGGGGTGATGAGGAAGGCCATGAAAGATGTGGAGATAAAAGGGTATTTAATACCAAAGGGATGGTGTGTCTTCACATATTTCAGATCAGTTCATCTTGATCAGCATAACTATGATTGGCCTTATCACTTCAATCCATGGAGGTGGCAAGACAAAGATATGAGCAGCTGCAACTTCACTCCTTTTGGAGGAGGACAAAGGCTGTGTCCTGGACTTGACTTAGCAAGGCTTGAAGCCTCCATTTTCTTACACCACTTTGTCACTCGATTCAGGTGGGCGGCTGAGGAGGACACAATTGTGAACTTCCCCACAGTAAGAATGAAGCGGAGGATGCCAATCAGGGTCAAAAGGAAAGTTGGTGGGACCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

185

Amino Acids

21.54

Weight (kDa)

9.21

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	461, 508
AfiI	CCNNNNNNNGG	2 cut(s)	169, 371
AgsI	TTSAA	2 cut(s)	316, 416
AjnI	CCWGG	1 cut(s)	391
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	3 cut(s)	80, 94, 351
AluI	AGCT	3 cut(s)	80, 94, 351
AoxI	GGCC	2 cut(s)	201, 302
ApeKI	GCWGC	2 cut(s)	348, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspS9I	GGNCC	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	546
AxyI	CCTNAGG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	338, 360
BccI	CCATC	2 cut(s)	163, 240
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	2 cut(s)	150, 283
BfaI	CTAG	1 cut(s)	553
BisI	GCNGC	3 cut(s)	349, 352, 462
BlsI	GCNGC	3 cut(s)	350, 353, 463
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	2 cut(s)	547, 548
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 371
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	3 cut(s)	174, 251, 519
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	2 cut(s)	169, 371
BseMII	CTCAG	3 cut(s)	39, 48, 456
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	74, 387, 482
BseXI	GCAGC	2 cut(s)	338, 360
BshFI	GGCC	2 cut(s)	203, 304
BslI	CCNNNNNNNGG	2 cut(s)	169, 371
BsnI	GGCC	2 cut(s)	203, 304
Bsp143I	GATC	3 cut(s)	150, 269, 283
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	461, 508
BspANI	GGCC	2 cut(s)	203, 304
BspCNI	CTCAG	3 cut(s)	38, 49, 457
BspLI	GGNNCC	2 cut(s)	547, 548
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	3 cut(s)	150, 269, 283
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	108, 496
BstDEI	CTNAG	5 cut(s)	25, 57, 164, 403, 465
BstDSI	CCRYGG	1 cut(s)	320
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	174, 251, 519
BstKTI	GATC	3 cut(s)	153, 272, 286
BstMBI	GATC	3 cut(s)	150, 269, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 514
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	338, 360
BstV2I	GAAGAC	1 cut(s)	247
BstXI	CCANNNNNNTGG	3 cut(s)	111, 246, 327
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	203, 304
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	174, 251, 519
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 104
Cfr13I	GGNCC	1 cut(s)	546
CviAII	CATG	3 cut(s)	67, 205, 321
DdeI	CTNAG	5 cut(s)	25, 57, 164, 403, 465
DpnI	GATC	3 cut(s)	152, 271, 285
DpnII	GATC	3 cut(s)	150, 269, 283
Eco130I	CCWWGG	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	546
Eco81I	CCTNAGG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	3 cut(s)	70, 208, 324
FaiI	YATR	8 cut(s)	68, 182, 206, 262, 291, 297, 322, 344
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	3 cut(s)	66, 204, 320
FbaI	TGATCA	2 cut(s)	150, 283
Fnu4HI	GCNGC	3 cut(s)	349, 352, 462
FokI	GGATG	3 cut(s)	181, 258, 526
Fsp4HI	GCNGC	3 cut(s)	349, 352, 462
FspBI	CTAG	1 cut(s)	553
GluI	GCNGC	3 cut(s)	349, 352, 462
HaeIII	GGCC	2 cut(s)	203, 304
Hin1II	CATG	3 cut(s)	70, 208, 324
HinfI	GANTC	3 cut(s)	4, 29, 450
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	28, 84, 269
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	108, 496
HpyCH4V	TGCA	2 cut(s)	11, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 514
HpyF3I	CTNAG	5 cut(s)	25, 57, 164, 403, 465
Hsp92II	CATG	3 cut(s)	70, 208, 324
KflI	GGGWCCC	1 cut(s)	546
Ksp22I	TGATCA	2 cut(s)	150, 283
Kzo9I	GATC	3 cut(s)	150, 269, 283
LpnPI	CCDG	5 cut(s)	171, 378, 405, 439, 508
Lsp1109I	GCAGC	2 cut(s)	338, 360
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	553
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	152, 271, 285
MboI	GATC	3 cut(s)	150, 269, 283
MboII	GAAGA	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	477
MluCI	AATT	2 cut(s)	50, 477
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	70, 92
MseI	TTAA	3 cut(s)	53, 74, 233
MslI	CAYNNNNRTG	3 cut(s)	294, 325, 479
MspA1I	CMGCKG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	100, 514
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	3 cut(s)	150, 269, 283
NlaIII	CATG	3 cut(s)	70, 208, 324
NlaIV	GGNNCC	2 cut(s)	547, 548
NmuCI	GTSAC	1 cut(s)	442
OliI	CACNNNNGTG	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	450
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	350, 353, 463
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	547, 548
PspPI	GGNCC	1 cut(s)	546
PspPPI	RGGWCCY	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	351
RseI	CAYNNNNRTG	3 cut(s)	294, 325, 479
SaqAI	TTAA	3 cut(s)	53, 74, 233
SatI	GCNGC	3 cut(s)	349, 352, 462
Sau3AI	GATC	3 cut(s)	150, 269, 283
Sau96I	GGNCC	1 cut(s)	546
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	393
SetI	ASST	6 cut(s)	24, 82, 96, 329, 353, 458
SfaNI	GCATC	1 cut(s)	504
SinI	GGWCC	1 cut(s)	546
SmiMI	CAYNNNNRTG	3 cut(s)	294, 325, 479
Sse9I	AATT	2 cut(s)	50, 477
SsiI	CCGC	2 cut(s)	461, 508
SspMI	CTAG	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	108, 496
TaqI	TCGA	1 cut(s)	448
TasI	AATT	2 cut(s)	50, 477
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	3 cut(s)	53, 74, 233
Tru9I	TTAA	3 cut(s)	53, 74, 233
TscAI	CASTG	2 cut(s)	43, 111
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	348, 351
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	83, 221, 266, 518
TspRI	CASTG	2 cut(s)	43, 111
VpaK11BI	GGWCC	1 cut(s)	546
XagI	CCTNNNNNAGG	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.