Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008754

Physical Location & Seq

Genomic Coordinates Forward (+)

3585657 .. 3592033

Gene Structure 6377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G050900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGACAATTTGCTGATTGTACTAATATTGGCAGCAACAACAACAACAACAGCAATTTTGATATTGTCCATTATATTTCTCTACAGAAACAACAGCAACTTGATCCTGAGATCAAAACACAGAAGAAGGCCACTTCCTTTAGGCACTCTTGGATGGCCATTTCTTGGTGAAACCATTGAGTTTGTGTCTTGTGCTTACTCTGACTGCCCTGAGAGCTTCATGGACAAACGCCGCCACTTGTATGGGAAGGTGTTCAAGTCACACATATTTGGAAGTCCAACAATTGTATCAACAGATGCAGAAGTGAGTAAGTTTGTGCTGCAAAGTGATGCAAAGGCTTTTGTACCATCTTACCCAAAATCTCTCACTGAGTTGATGGGAAAGTCCTCTATATTGCTTATCAATGGAGCCTTGCAGAGAAGAGTCCATGGGCTCATAGGAGCCTTCTTTAAGTCTCCACATCTCAAAGCTCAAATCACCACAGACATGCAGAAGTATGTCCAACAATCAATGGCAAATTGGAGAGATGATCGTTCCATTTACATACAAGATGAAACCAAAAATATTGCATTCCAAGTACTTGTCAAGGCATTGATTAGTTTGGATCCTGGTGCAGACATGGAGTTCCTAAAGAAACAGTTCCAAGAATTCATTGCTGGCCTCATGTCTCTACCCATAAACATTCCTGGAAGCAGACTTTACAGATCATTACAGGCAAAGAAGAAAATGATCAAGCTTGTACAGAAAATTATACAAGCTAGAAAAAAAGGGACTAGTAGCATCTCCAACAAGGTTGCCAGAGATGTGGTAGATGTTTTGCTAAGTGACACAAGTGGGCAATTGACAGATGACCTGATAGCAGATAACATGATTGATATGATGATACCAGGGGAGGATTCGGTCCCAGTTCTTATGACTCTTGCAATCAAATACCTCTCAGATTCCCCCACTGCTCTTCAACAGTTAACAGAGGAGAACATGAAGTTAAAAACACTCAAGGATCAGCTTGGAGAGCCTTTATGTTGGAGTGATTACTTATCCTTACCATTTACACAAAATGTGATCACAGAAACTCTAAGGATGGGAAACATCATCATTGGGGTGATGAGGAAGGCCATGAAAGATGTTGAGATAAAAGGGTATCTAATACCAAAGGGCTGGTGTGTCTTCACATATTTTAGATCAGTTCACCTGGATGAGAACAATTATGATTGGCCTTATGACTTCAATCCATGGAGGTGGCAAGACAAAGACATGAGCAGCTCTAACTTCACTCCTTTTGGAGGTGGACAAAGGCTGTGTCCTGGGCTTGACTTAGCTAGGCTGGAAGCCTCCATCTTTTTACACCACTTTGTCACTCAATTCAGGTGGGTGGCTGAGGAGGACACGATTGTTAACTTTCCCACAGTAAGAATGAAGAGGAGGATGCCAGTAAGGGTCAAAAGGAAAGGGGACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009791 GO:0009908 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

487

Amino Acids

55.4

Weight (kDa)

9.33

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13730 AT3G13730
fragaria_vesca	FvH4_6g33170 FvH4_6g33170 FvH4_6g33170 FvH4_6g33170
malus_domestica	MD09G1194400.v1.1
prunus_persica	Prupe.3G050900_v2.0.a1 Prupe.3G050900_v2.0.a1
pyrus_communis	pycom09g11090 pycom09g11100 pycom17g18010
rosa_chinensis	RchiOBHm_Chr2g0142901
rosa_laevigata	RLG00000019995
rosa_roxburghii	Rroxscaffold_2G00102240 Rroxscaffold_2G00103280
rosa_rugosa	Rorug02G0376700 Rorug02G0376700
rosa_samantha	Rh2AG429500 Rh2BG438600 Rh2CG414900 Rh2DG448700
rosa_wichuraiana	Rw2G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	4 cut(s)	97, 599, 612, 1008
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	647
AfaI	GTAC	4 cut(s)	21, 345, 579, 741
AfiI	CCNNNNNNNGG	2 cut(s)	164, 1283
AgsI	TTSAA	3 cut(s)	256, 959, 1228
AhlI	ACTAGT	1 cut(s)	773
AjnI	CCWGG	5 cut(s)	607, 685, 886, 1191, 1303
AluBI	AGCT	7 cut(s)	216, 470, 736, 758, 1006, 1263, 1319
AluI	AGCT	7 cut(s)	216, 470, 736, 758, 1006, 1263, 1319
Alw26I	GTCTC	2 cut(s)	459, 672
AlwI	GGATC	4 cut(s)	97, 599, 612, 1008
AoxI	GGCC	5 cut(s)	128, 155, 658, 1113, 1214
ApeKI	GCWGC	3 cut(s)	32, 319, 1260
ApoI	RAATTY	1 cut(s)	647
ArsI	GACNNNNNNTTYG	2 cut(s)	1285, 1317
Asp700I	GAANNNNTTC	2 cut(s)	251, 638
AspS9I	GGNCC	2 cut(s)	901, 1453
AsuHPI	GGTGA	4 cut(s)	179, 469, 1114, 1181
AvaII	GGWCC	2 cut(s)	901, 1453
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BalI	TGGCCA	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	1159
BbvCI	CCTCAGC	1 cut(s)	1377
BbvI	GCAGC	3 cut(s)	44, 306, 1272
BccI	CCATC	5 cut(s)	147, 355, 370, 1075, 1343
BciT130I	CCWGG	5 cut(s)	609, 687, 888, 1193, 1305
BclI	TGATCA	2 cut(s)	729, 1062
BcoDI	GTCTC	2 cut(s)	459, 672
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	4 cut(s)	759, 774, 1320, 1459
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	4 cut(s)	33, 232, 320, 1261
BlsI	GCNGC	4 cut(s)	34, 233, 321, 1262
BmcAI	AGTACT	1 cut(s)	579
Bme1390I	CCNGG	5 cut(s)	609, 687, 888, 1193, 1305
Bme18I	GGWCC	2 cut(s)	901, 1453
BmgT120I	GGNCC	2 cut(s)	901, 1453
BmiI	GGNNCC	5 cut(s)	409, 442, 606, 903, 1454
BmrFI	CCNGG	5 cut(s)	609, 687, 888, 1193, 1305
BmrI	ACTGGG	1 cut(s)	899
BmsI	GCATC	4 cut(s)	286, 319, 789, 1416
BmuI	ACTGGG	1 cut(s)	899
BpiI	GAAGAC	1 cut(s)	1159
Bpu10I	CCTNAGC	1 cut(s)	1377
BpuEI	CTTGAG	1 cut(s)	980
BsaJI	CCNNGG	4 cut(s)	427, 887, 1232, 1304
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 1283
Bse1I	ACTGG	2 cut(s)	905, 1430
Bse3DI	GCAATG	1 cut(s)	651
BseBI	CCWGG	5 cut(s)	609, 687, 888, 1193, 1305
BseDI	CCNNGG	4 cut(s)	427, 887, 1232, 1304
BseGI	GGATG	4 cut(s)	158, 1086, 1201, 1431
BseLI	CCNNNNNNNGG	2 cut(s)	164, 1283
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	5 cut(s)	98, 201, 360, 951, 1368
BseNI	ACTGG	2 cut(s)	905, 1430
BseRI	GAGGAG	3 cut(s)	986, 1394, 1435
BseXI	GCAGC	3 cut(s)	44, 306, 1272
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	5 cut(s)	130, 157, 660, 1115, 1216
BslFI	GGGAC	2 cut(s)	784, 887
BslI	CCNNNNNNNGG	2 cut(s)	164, 1283
BsmAI	GTCTC	2 cut(s)	459, 672
BsmFI	GGGAC	2 cut(s)	784, 887
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	5 cut(s)	130, 157, 660, 1115, 1216
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp1407I	TGTACA	1 cut(s)	739
Bsp143I	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
Bsp19I	CCATGG	2 cut(s)	427, 1232
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	5 cut(s)	130, 157, 660, 1115, 1216
BspCNI	CTCAG	5 cut(s)	99, 202, 361, 950, 1369
BspLI	GGNNCC	5 cut(s)	409, 442, 606, 903, 1454
BspPI	GGATC	4 cut(s)	97, 599, 612, 1008
BspQI	GCTCTTC	1 cut(s)	960
BsrDI	GCAATG	1 cut(s)	651
BsrGI	TGTACA	1 cut(s)	739
BsrI	ACTGG	2 cut(s)	905, 1430
BssECI	CCNNGG	4 cut(s)	427, 887, 1232, 1304
BssMI	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
BssT1I	CCWWGG	2 cut(s)	427, 1232
Bst2UI	CCWGG	5 cut(s)	609, 687, 888, 1193, 1305
Bst4CI	ACNGT	3 cut(s)	639, 963, 1408
Bst6I	CTCTTC	3 cut(s)	415, 960, 1412
BstAUI	TGTACA	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	8 cut(s)	107, 210, 369, 821, 937, 1076, 1315, 1377
BstDSI	CCRYGG	2 cut(s)	427, 1232
BstENI	CCTNNNNNAGG	1 cut(s)	1281
BstF5I	GGATG	4 cut(s)	158, 1086, 1201, 1431
BstKTI	GATC	9 cut(s)	105, 113, 532, 607, 707, 732, 1003, 1065, 1184
BstMAI	GTCTC	2 cut(s)	459, 672
BstMBI	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 1012
BstNI	CCWGG	5 cut(s)	609, 687, 888, 1193, 1305
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	5 cut(s)	607, 685, 886, 1191, 1303
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	44, 306, 1272
BstV2I	GAAGAC	1 cut(s)	1159
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	4 cut(s)	242, 805, 1158, 1239
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	5 cut(s)	130, 157, 660, 1115, 1216
BtgI	CCRYGG	2 cut(s)	427, 1232
BtsCI	GGATG	4 cut(s)	158, 1086, 1201, 1431
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	2 cut(s)	366, 948
Cac8I	GCNNGC	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	901, 1453
Csp6I	GTAC	4 cut(s)	20, 344, 578, 740
CspCI	CAANNNNNGTGG	2 cut(s)	1349, 1384
CviQI	GTAC	4 cut(s)	20, 344, 578, 740
DdeI	CTNAG	8 cut(s)	107, 210, 369, 821, 937, 1076, 1315, 1377
DpnI	GATC	9 cut(s)	104, 112, 531, 606, 706, 731, 1002, 1064, 1183
DpnII	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	3 cut(s)	415, 960, 1412
EarI	CTCTTC	3 cut(s)	415, 960, 1412
Eco130I	CCWWGG	2 cut(s)	427, 1232
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	901, 1453
EcoNI	CCTNNNNNAGG	1 cut(s)	1281
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	5 cut(s)	607, 685, 886, 1191, 1303
EcoT14I	CCWWGG	2 cut(s)	427, 1232
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	427, 1232
FaqI	GGGAC	2 cut(s)	784, 887
FbaI	TGATCA	2 cut(s)	729, 1062
Fnu4HI	GCNGC	4 cut(s)	33, 232, 320, 1261
FokI	GGATG	4 cut(s)	165, 1093, 1208, 1438
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	33, 232, 320, 1261
FspBI	CTAG	4 cut(s)	759, 774, 1320, 1459
GluI	GCNGC	4 cut(s)	33, 232, 320, 1261
HaeIII	GGCC	5 cut(s)	130, 157, 660, 1115, 1216
HincII	GTYRAC	2 cut(s)	966, 1396
HindII	GTYRAC	2 cut(s)	966, 1396
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	4 cut(s)	423, 896, 916, 941
HpaI	GTTAAC	2 cut(s)	966, 1396
HphI	GGTGA	4 cut(s)	179, 469, 1114, 1181
Hpy166II	GTNNAC	4 cut(s)	966, 1189, 1289, 1396
Hpy188I	TCNGA	2 cut(s)	202, 940
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	4 cut(s)	966, 1189, 1289, 1396
HpyAV	CCTTC	4 cut(s)	120, 241, 454, 1105
HpyCH4III	ACNGT	3 cut(s)	639, 963, 1408
HpyCH4V	TGCA	8 cut(s)	299, 322, 332, 415, 490, 569, 614, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 1012
HpyF3I	CTNAG	8 cut(s)	107, 210, 369, 821, 937, 1076, 1315, 1377
Ksp22I	TGATCA	2 cut(s)	729, 1062
KspAI	GTTAAC	2 cut(s)	966, 1396
Kzo9I	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
LguI	GCTCTTC	1 cut(s)	960
LmnI	GCTCC	2 cut(s)	407, 440
Lsp1109I	GCAGC	3 cut(s)	44, 306, 1272
LweI	GCATC	4 cut(s)	286, 319, 789, 1416
MaeI	CTAG	4 cut(s)	759, 774, 1320, 1459
MaeIII	GTNAC	3 cut(s)	258, 824, 1354
MalI	GATC	9 cut(s)	104, 112, 531, 606, 706, 731, 1002, 1064, 1183
MboI	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
MboII	GAAGA	6 cut(s)	135, 432, 733, 947, 1159, 1429
MfeI	CAATTG	2 cut(s)	282, 839
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	9 cut(s)	7, 54, 282, 517, 647, 747, 839, 1204, 1361
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	432, 910
MmeI	TCCRAC	4 cut(s)	302, 526, 810, 1004
Mox20I	TGGCCA	1 cut(s)	157
MroXI	GAANNNNTTC	2 cut(s)	251, 638
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	4 cut(s)	450, 965, 986, 1395
MslI	CAYNNNNRTG	5 cut(s)	240, 485, 1100, 1194, 1237
Msp20I	TGGCCA	1 cut(s)	157
MspR9I	CCNGG	5 cut(s)	609, 687, 888, 1193, 1305
MunI	CAATTG	2 cut(s)	282, 839
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	5 cut(s)	609, 687, 888, 1193, 1305
MwoI	GCNNNNNNNGC	2 cut(s)	213, 1012
NcoI	CCATGG	2 cut(s)	427, 1232
NdeII	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
NlaIV	GGNNCC	5 cut(s)	409, 442, 606, 903, 1454
NmuCI	GTSAC	3 cut(s)	258, 824, 1354
NspI	RCATGY	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	960
PctI	GAATGC	1 cut(s)	569
PdmI	GAANNNNTTC	2 cut(s)	251, 638
PfeI	GAWTC	2 cut(s)	896, 941
PflMI	CCANNNNNTGG	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	4 cut(s)	34, 233, 321, 1262
PleI	GAGTC	2 cut(s)	431, 910
PpsI	GAGTC	2 cut(s)	431, 910
Psp6I	CCWGG	5 cut(s)	607, 685, 886, 1191, 1303
PspGI	CCWGG	5 cut(s)	607, 685, 886, 1191, 1303
PspN4I	GGNNCC	5 cut(s)	409, 442, 606, 903, 1454
PspPI	GGNCC	2 cut(s)	901, 1453
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	4 cut(s)	21, 345, 579, 741
RsaNI	GTAC	4 cut(s)	20, 344, 578, 740
RseI	CAYNNNNRTG	5 cut(s)	240, 485, 1100, 1194, 1237
SapI	GCTCTTC	1 cut(s)	960
SaqAI	TTAA	4 cut(s)	450, 965, 986, 1395
SatI	GCNGC	4 cut(s)	33, 232, 320, 1261
Sau3AI	GATC	9 cut(s)	102, 110, 529, 604, 704, 729, 1000, 1062, 1181
Sau96I	GGNCC	2 cut(s)	901, 1453
ScaI	AGTACT	1 cut(s)	579
SchI	GAGTC	2 cut(s)	432, 910
ScrFI	CCNGG	5 cut(s)	609, 687, 888, 1193, 1305
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	4 cut(s)	286, 319, 789, 1416
SfcI	CTRYAG	1 cut(s)	82
SinI	GGWCC	2 cut(s)	901, 1453
SmiMI	CAYNNNNRTG	5 cut(s)	240, 485, 1100, 1194, 1237
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	9 cut(s)	7, 54, 282, 517, 647, 747, 839, 1204, 1361
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	2 cut(s)	27, 565
SspMI	CTAG	4 cut(s)	759, 774, 1320, 1459
StyD4I	CCNGG	5 cut(s)	607, 685, 886, 1191, 1303
StyI	CCWWGG	2 cut(s)	427, 1232
TaaI	ACNGT	3 cut(s)	639, 963, 1408
TaqII	GACCGA	1 cut(s)	889
TasI	AATT	9 cut(s)	7, 54, 282, 517, 647, 747, 839, 1204, 1361
TatI	WGTACW	3 cut(s)	19, 577, 739
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	896, 941
Tru1I	TTAA	4 cut(s)	450, 965, 986, 1395
Tru9I	TTAA	4 cut(s)	450, 965, 986, 1395
TscAI	CASTG	2 cut(s)	373, 955
TseFI	GTSAC	3 cut(s)	258, 824, 1354
TseI	GCWGC	3 cut(s)	32, 319, 1260
Tsp45I	GTSAC	3 cut(s)	258, 824, 1354
TspDTI	ATGAA	6 cut(s)	208, 567, 640, 995, 1133, 1430
TspRI	CASTG	2 cut(s)	373, 955
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	901, 1453
XagI	CCTNNNNNAGG	1 cut(s)	1281
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	490
XmnI	GAANNNNTTC	2 cut(s)	251, 638
XspI	CTAG	4 cut(s)	759, 774, 1320, 1459
ZrmI	AGTACT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.