Rorug02G0385100

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Reverse (-)
49151155 .. 49155608
4454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0385100.1

Sequence Viewer

Length: 1119 bp
ATGTACAAACTCACTGCGCTGTTGGTGCTACTATGCGCTGCTTGCCACACAAGTTTATCTGCTCCTACTGATGGTCTATTACCGAATGGCAACTTCGAGTATGGCCCTAAACCGTCACAAATGAAAGGTACGGTGGTAACAGCTCACAATGCCATTCCCAACTGGGAAACCTCAGGCTACGTTGAGTACATAAAATCCGGCCACAAGCAAGGCGACATGCTGCTGGTGGTTCCCCAGGGTGGCTTCGCCATCAGGCTAGGGAACGACGCCTCAATCAAGCAGAAGATCAAGGTGACCAAAGGCGGCTTCTACTCCATAACGTTCAGTGCGGCTCGTACATGTGCGCAGGAGGAGACATTGAACATTTCAGTCAATCCCAACCTTGAGAAACAGGACTTTGGCATATTTCCGGTTCAGACCATGTACAGCAGCAACGGGTGGGATTCATATGCTTGGGGCTTTAATGTTGATGCTGCTGAAATTGAGCTAACCATCCATAACCCGGGGGTGGAGGAGGATCCGGCTTGTGGCCCGCTTATCGATTCGGTTGCTTTGAAGGTCTTGGAGATTCCTAAACGTACTAGAGCCAACTTGTTGAAGAATGGCAACTTCGAAGAAGGACCTTATGTGTTTCCCAACACATCATGGGGTGTCCTCATCCCACCCCACATCGAAGATGACCACAGTCCACTACCAGGCTGGATCATCGAATCCCTCAAGGCCGTTAAATACATCGACTCCAAGCACTACACCGTCCCCGAAGGCCGAAGAGCCATTGAGCTCGTCGCCGGAAAAGAGAGCGCATTGGCCCAAGTGGTCCTCACCAAGCCCGGCAGGCGCTACGCCCTCACATTCTCTGTCGGCGACGGCAACAACGGCTGCGAAGGCTCCCTCGTTATCGAGGCATTTGCCGGCAAGGAGACAGTGAAGGTTCCCTACGAGTCCAAAGGCAAAGGAGGGTTCAAGAAGGCCAGGCTGCTATTCACCGCCGCGTCGCCGCGCACACGTATCATGTTTCTGAGCACGTTCTATACCATGACGAGCGATCACTCCGGCTCTCTGTGTGGTCCGGTTATCGATGATGTCAAGTTGCTCAGCATTCGCGGACGACGTGTTTGA

Protein Analysis

372

Amino Acids

40.5

Weight (kDa)

8.1

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 25 - 186 4.2e-68 Protein of unknown function (DUF642)
DUF642 PF04862 197 - 364 8.1e-17 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
AccII CGCG 3 cut(s) 992, 1000, 1104
AciI CCGC 7 cut(s) 303, 329, 533, 987, 990, 998, 1104
AclI AACGTT 1 cut(s) 320
AclWI GGATC 3 cut(s) 512, 525, 710
AcoI YGGCCR 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 6 cut(s) 5, 130, 188, 337, 425, 580
AfiI CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
AflIII ACRYGT 3 cut(s) 338, 1004, 1111
AgsI TTSAA 4 cut(s) 361, 556, 598, 964
AjiI CACGTC 1 cut(s) 1112
AjnI CCWGG 3 cut(s) 234, 694, 971
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 3 cut(s) 143, 487, 781
AluI AGCT 3 cut(s) 143, 487, 781
Alw21I GWGCWC 2 cut(s) 783, 1025
Alw26I GTCTC 2 cut(s) 347, 914
AlwI GGATC 3 cut(s) 512, 525, 710
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 7 cut(s) 103, 199, 529, 720, 763, 807, 969
ApeKI GCWGC 6 cut(s) 38, 220, 429, 473, 879, 976
ArsI GACNNNNNNTTYG 1 cut(s) 1098
AspLEI GCGC 6 cut(s) 19, 38, 346, 803, 840, 1002
AspS9I GGNCC 6 cut(s) 104, 530, 620, 808, 817, 1067
AsuC2I CCSGG 3 cut(s) 503, 504, 831
AsuHPI GGTGA 3 cut(s) 304, 814, 976
AsuII TTCGAA 1 cut(s) 612
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 3 cut(s) 620, 817, 1067
AxyI CCTNAGG 1 cut(s) 172
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BamHI GGATCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 783
BarI GAAGNNNNNNTAC 2 cut(s) 920, 952
Bbv12I GWGCWC 2 cut(s) 783, 1025
BbvI GCAGC 6 cut(s) 25, 207, 441, 460, 866, 963
BccI CCATC 3 cut(s) 65, 257, 500
BceAI ACGGC 3 cut(s) 707, 883, 892
BcgI CGANNNNNNTGC 4 cut(s) 530, 564, 890, 924
BciT130I CCWGG 3 cut(s) 236, 696, 973
BcnI CCSGG 3 cut(s) 503, 504, 831
BcoDI GTCTC 2 cut(s) 347, 914
BfaI CTAG 2 cut(s) 257, 582
BfoI RGCGCY 1 cut(s) 841
BglI GCCNNNNNGGC 1 cut(s) 835
BlpI GCTNAGC 1 cut(s) 1094
Bme1390I CCNGG 6 cut(s) 236, 503, 504, 696, 831, 973
Bme18I GGWCC 3 cut(s) 620, 817, 1067
BmeT110I CYCGRG 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 1112
BmgT120I GGNCC 6 cut(s) 104, 530, 620, 808, 817, 1067
BmiI GGNNCC 4 cut(s) 231, 519, 889, 933
BmrFI CCNGG 6 cut(s) 236, 503, 504, 696, 831, 973
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 172
BoxI GACNNNNGTC 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 1094
Bpu14I TTCGAA 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 404, 701
BpuMI CCSGG 3 cut(s) 503, 504, 831
Bsa29I ATCGAT 2 cut(s) 540, 1077
BsaAI YACGTR 1 cut(s) 1007
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 234, 235, 502, 503
BsaWI WCCGGW 2 cut(s) 409, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
Bse118I RCCGGY 1 cut(s) 911
Bse1I ACTGG 1 cut(s) 167
Bse21I CCTNAGG 1 cut(s) 172
BseBI CCWGG 3 cut(s) 236, 696, 973
BseCI ATCGAT 2 cut(s) 540, 1077
BseDI CCNNGG 4 cut(s) 234, 235, 502, 503
BseGI GGATG 2 cut(s) 492, 657
BseLI CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
BseMII CTCAG 3 cut(s) 186, 1010, 1108
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 2 cut(s) 365, 527
BseXI GCAGC 6 cut(s) 25, 207, 441, 460, 866, 963
Bsh1236I CGCG 3 cut(s) 992, 1000, 1104
BshFI GGCC 7 cut(s) 105, 201, 531, 722, 765, 809, 971
BshVI ATCGAT 2 cut(s) 540, 1077
BsiHKAI GWGCWC 2 cut(s) 783, 1025
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
BsmAI GTCTC 2 cut(s) 347, 914
BsmFI GGGAC 1 cut(s) 740
BsmI GAATGC 1 cut(s) 1098
BsnI GGCC 7 cut(s) 105, 201, 531, 722, 765, 809, 971
BsoBI CYCGRG 1 cut(s) 502
Bsp119I TTCGAA 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 783, 1025
Bsp1407I TGTACA 2 cut(s) 3, 423
Bsp143I GATC 4 cut(s) 285, 517, 702, 1045
Bsp1720I GCTNAGC 1 cut(s) 1094
BspACI CCGC 7 cut(s) 303, 329, 533, 987, 990, 998, 1104
BspANI GGCC 7 cut(s) 105, 201, 531, 722, 765, 809, 971
BspCNI CTCAG 3 cut(s) 185, 1011, 1107
BspDI ATCGAT 2 cut(s) 540, 1077
BspFNI CGCG 3 cut(s) 992, 1000, 1104
BspLI GGNNCC 4 cut(s) 231, 519, 889, 933
BspPI GGATC 3 cut(s) 512, 525, 710
BspQI GCTCTTC 1 cut(s) 763
BspT104I TTCGAA 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 911
BsrGI TGTACA 2 cut(s) 3, 423
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 911
BssECI CCNNGG 4 cut(s) 234, 235, 502, 503
BssMI GATC 4 cut(s) 285, 517, 702, 1045
BssNI GRCGYC 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 236, 696, 973
Bst4CI ACNGT 5 cut(s) 114, 133, 686, 754, 925
Bst6I CTCTTC 1 cut(s) 763
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 2 cut(s) 3, 423
BstBAI YACGTR 1 cut(s) 1007
BstBI TTCGAA 1 cut(s) 612
BstC8I GCNNGC 4 cut(s) 43, 533, 836, 913
BstDEI CTNAG 3 cut(s) 172, 1019, 1094
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 2 cut(s) 492, 657
BstFNI CGCG 3 cut(s) 992, 1000, 1104
BstH2I RGCGCY 1 cut(s) 841
BstHHI GCGC 6 cut(s) 19, 38, 346, 803, 840, 1002
BstKTI GATC 4 cut(s) 288, 520, 705, 1048
BstMAI GTCTC 2 cut(s) 347, 914
BstMBI GATC 4 cut(s) 285, 517, 702, 1045
BstMWI GCNNNNNNNGC 6 cut(s) 25, 42, 149, 835, 876, 885
BstNI CCWGG 3 cut(s) 236, 696, 973
BstNSI RCATGY 2 cut(s) 220, 342
BstPAI GACNNNNGTC 1 cut(s) 684
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 6 cut(s) 234, 501, 502, 694, 829, 971
BstUI CGCG 3 cut(s) 992, 1000, 1104
BstV1I GCAGC 6 cut(s) 25, 207, 441, 460, 866, 963
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu15I ATCGAT 2 cut(s) 540, 1077
Bsu36I CCTNAGG 1 cut(s) 172
BsuRI GGCC 7 cut(s) 105, 201, 531, 722, 765, 809, 971
BsuTUI ATCGAT 2 cut(s) 540, 1077
BtrI CACGTC 1 cut(s) 1112
BtsCI GGATG 2 cut(s) 492, 657
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 331, 930
Cac8I GCNNGC 4 cut(s) 43, 533, 836, 913
CfoI GCGC 6 cut(s) 19, 38, 346, 803, 840, 1002
Cfr10I RCCGGY 1 cut(s) 911
Cfr13I GGNCC 6 cut(s) 104, 530, 620, 808, 817, 1067
Cfr9I CCCGGG 1 cut(s) 502
ClaI ATCGAT 2 cut(s) 540, 1077
CseI GACGC 2 cut(s) 275, 981
Csp6I GTAC 6 cut(s) 4, 129, 187, 336, 424, 579
CviAII CATG 6 cut(s) 217, 339, 421, 645, 1012, 1036
CviQI GTAC 6 cut(s) 4, 129, 187, 336, 424, 579
DdeI CTNAG 3 cut(s) 172, 1019, 1094
DpnI GATC 4 cut(s) 287, 519, 704, 1047
DpnII GATC 4 cut(s) 285, 517, 702, 1045
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
Ecl136II GAGCTC 1 cut(s) 781
Eco24I GRGCYC 1 cut(s) 783
Eco47I GGWCC 3 cut(s) 620, 817, 1067
Eco53kI GAGCTC 1 cut(s) 781
Eco81I CCTNAGG 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 502
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 3 cut(s) 234, 694, 971
EcoT38I GRGCYC 1 cut(s) 783
FaeI CATG 6 cut(s) 220, 342, 424, 648, 1015, 1039
FaqI GGGAC 1 cut(s) 740
FatI CATG 6 cut(s) 216, 338, 420, 644, 1011, 1035
FauI CCCGC 1 cut(s) 540
FauNDI CATATG 1 cut(s) 448
FokI GGATG 2 cut(s) 479, 644
FriOI GRGCYC 1 cut(s) 783
FspBI CTAG 2 cut(s) 257, 582
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 6 cut(s) 18, 37, 345, 802, 839, 1001
HaeII RGCGCY 1 cut(s) 841
HaeIII GGCC 7 cut(s) 105, 201, 531, 722, 765, 809, 971
HapII CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
HgaI GACGC 2 cut(s) 275, 981
HhaI GCGC 6 cut(s) 19, 38, 346, 803, 840, 1002
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 6 cut(s) 220, 342, 424, 648, 1015, 1039
Hin6I GCGC 6 cut(s) 17, 36, 344, 801, 838, 1000
HinP1I GCGC 6 cut(s) 17, 36, 344, 801, 838, 1000
HinfI GANTC 6 cut(s) 443, 542, 568, 710, 737, 941
HpaII CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
HphI GGTGA 3 cut(s) 304, 814, 976
Hpy166II GTNNAC 1 cut(s) 689
Hpy188I TCNGA 2 cut(s) 417, 1020
Hpy188III TCNNGA 1 cut(s) 964
Hpy8I GTNNAC 1 cut(s) 689
Hpy99I CGWCG 5 cut(s) 269, 788, 869, 997, 1113
HpyAV CCTTC 6 cut(s) 550, 611, 755, 878, 922, 961
HpyCH4III ACNGT 5 cut(s) 114, 133, 686, 754, 925
HpyCH4IV ACGT 6 cut(s) 180, 320, 577, 1006, 1025, 1111
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 42, 149, 835, 876, 885
HpyF3I CTNAG 3 cut(s) 172, 1019, 1094
HpySE526I ACGT 6 cut(s) 180, 320, 577, 1006, 1025, 1111
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 6 cut(s) 220, 342, 424, 648, 1015, 1039
HspAI GCGC 6 cut(s) 17, 36, 344, 801, 838, 1000
KroI GCCGGC 1 cut(s) 911
KroNI GCCGGC 1 cut(s) 913
Kzo9I GATC 4 cut(s) 285, 517, 702, 1045
LguI GCTCTTC 1 cut(s) 763
LmnI GCTCC 2 cut(s) 67, 893
Lsp1109I GCAGC 6 cut(s) 25, 207, 441, 460, 866, 963
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 257, 582
MaeII ACGT 6 cut(s) 180, 320, 577, 1006, 1025, 1111
MaeIII GTNAC 3 cut(s) 114, 136, 292
MalI GATC 4 cut(s) 287, 519, 704, 1047
MboI GATC 4 cut(s) 285, 517, 702, 1045
MboII GAAGA 5 cut(s) 295, 610, 626, 686, 780
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 2 cut(s) 783, 1025
MluCI AATT 1 cut(s) 480
MlyI GAGTC 2 cut(s) 731, 950
MroNI GCCGGC 1 cut(s) 911
MseI TTAA 2 cut(s) 462, 726
MspI CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
MspR9I CCNGG 6 cut(s) 236, 503, 504, 696, 831, 973
Mva1269I GAATGC 1 cut(s) 1098
MvaI CCWGG 3 cut(s) 236, 696, 973
MvnI CGCG 3 cut(s) 992, 1000, 1104
MwoI GCNNNNNNNGC 6 cut(s) 25, 42, 149, 835, 876, 885
NaeI GCCGGC 1 cut(s) 913
NciI CCSGG 3 cut(s) 503, 504, 831
NdeI CATATG 1 cut(s) 448
NdeII GATC 4 cut(s) 285, 517, 702, 1045
NgoMIV GCCGGC 1 cut(s) 911
NlaIII CATG 6 cut(s) 220, 342, 424, 648, 1015, 1039
NlaIV GGNNCC 4 cut(s) 231, 519, 889, 933
NmuCI GTSAC 2 cut(s) 114, 292
NsbI TGCGCA 1 cut(s) 345
NspI RCATGY 2 cut(s) 220, 342
NspV TTCGAA 1 cut(s) 612
PasI CCCWGGG 1 cut(s) 235
PciI ACATGT 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 763
PcsI WCGNNNNNNNCGW 1 cut(s) 1108
PctI GAATGC 1 cut(s) 1098
PdiI GCCGGC 1 cut(s) 913
PfeI GAWTC 4 cut(s) 443, 542, 568, 710
PleI GAGTC 2 cut(s) 731, 949
PpsI GAGTC 2 cut(s) 731, 949
Ppu21I YACGTR 1 cut(s) 1007
PpuMI RGGWCCY 1 cut(s) 620
PscI ACATGT 1 cut(s) 338
PshAI GACNNNNGTC 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 783
Psp1406I AACGTT 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 3 cut(s) 234, 694, 971
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 3 cut(s) 234, 694, 971
PspN4I GGNNCC 4 cut(s) 231, 519, 889, 933
PspPI GGNCC 6 cut(s) 104, 530, 620, 808, 817, 1067
PspPPI RGGWCCY 1 cut(s) 620
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 6 cut(s) 5, 130, 188, 337, 425, 580
RsaNI GTAC 6 cut(s) 4, 129, 187, 336, 424, 579
SacI GAGCTC 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 763
SaqAI TTAA 2 cut(s) 462, 726
Sau3AI GATC 4 cut(s) 285, 517, 702, 1045
Sau96I GGNCC 6 cut(s) 104, 530, 620, 808, 817, 1067
SchI GAGTC 2 cut(s) 731, 950
ScrFI CCNGG 6 cut(s) 236, 503, 504, 696, 831, 973
SduI GDGCHC 2 cut(s) 783, 1025
SfaNI GCATC 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 612
SinI GGWCC 3 cut(s) 620, 817, 1067
SmaI CCCGGG 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 383, 716
SmoI CTYRAG 2 cut(s) 383, 716
Sse9I AATT 1 cut(s) 480
SsiI CCGC 7 cut(s) 303, 329, 533, 987, 990, 998, 1104
SspMI CTAG 2 cut(s) 257, 582
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 6 cut(s) 234, 501, 502, 694, 829, 971
TaaI ACNGT 5 cut(s) 114, 133, 686, 754, 925
TaiI ACGT 6 cut(s) 183, 323, 580, 1009, 1028, 1114
TaqI TCGA 8 cut(s) 96, 540, 612, 672, 708, 735, 900, 1077
TasI AATT 1 cut(s) 480
TatI WGTACW 3 cut(s) 3, 186, 423
TauI GCSGC 4 cut(s) 306, 332, 992, 1000
TfiI GAWTC 4 cut(s) 443, 542, 568, 710
Tru1I TTAA 2 cut(s) 462, 726
Tru9I TTAA 2 cut(s) 462, 726
TscAI CASTG 3 cut(s) 19, 331, 930
TseFI GTSAC 2 cut(s) 114, 292
TseI GCWGC 6 cut(s) 38, 220, 429, 473, 879, 976
Tsp45I GTSAC 2 cut(s) 114, 292
TspDTI ATGAA 2 cut(s) 137, 435
TspMI CCCGGG 1 cut(s) 502
TspRI CASTG 3 cut(s) 19, 331, 930
VpaK11BI GGWCC 3 cut(s) 620, 817, 1067
XceI RCATGY 2 cut(s) 220, 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmaI CCCGGG 1 cut(s) 502
XspI CTAG 2 cut(s) 257, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.