Rroxscaffold_4G00311110

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000056
Physical Location & Seq
Reverse (-)
33387972 .. 33390597
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311110.1

Sequence Viewer

Length: 684 bp
ATGCCTCGGAAGAGATATTGTCGTTATTTTCACCATGTAGTGCAAAGACGTGAACCCAACCGCTGGCCAGAGCTGGAGGAAGACAAGCTTCTCATCATATTAAAGTTTTTTGATGTAAGGCTAAGGACCCTTCCGGGGGATCAACCAGATGTTTATGAAAGATATTTTCTAATAGCTGAAAGAGATATTTGGGTTGATTTTTCTCACATGAAGCACCAGTTATCATCATCCTCGTCCTCGTGCTCTTCCTCATCCTCATCATCGTATACACAGATTATCTGTGAGTCTCTTTCGAGCATGGGTGTGCCTCAACATGAACATCCGGTTGTTGTTCACAAGCTATTCCGGTTTGTCGAGGCTGCCGTCTCCCCCGACCTCCCTATTATTGTGGGTGTGTCAGACACCACTATTTTCAGGGACTCCAATTTGATTCCTGCGAGTAAATCTTCAATTGACGGTTTGCAGCAAGTGAGACTTGATAGTCGTATTATTGCACACACGCCCACGTGTGCCATTTGCTTGGAGGATTTTGCAGCTCTTTTGGTTGATCATCGACAACAACAAGAAGCTCTGATTACTCGCTTGCCCTGCCGACACTATTATCATCTGCATTGCATTGTCCAGTGTCTGGAGATCAACCACCTATGTCCCATGTGCCGATACCCAATGCCAACTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

227

Amino Acids

26.32

Weight (kDa)

6.88

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 169 - 220 4.1e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 169 - 220 1e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 480
AccB7I CCANNNNNTGG 2 cut(s) 63, 628
AccI GTMKAC 1 cut(s) 266
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 65
AcvI CACGTG 1 cut(s) 507
AfiI CCNNNNNNNGG 4 cut(s) 63, 135, 136, 628
AflIII ACRYGT 1 cut(s) 506
AgsI TTSAA 1 cut(s) 450
AjiI CACGTC 1 cut(s) 50
AluBI AGCT 6 cut(s) 73, 88, 176, 340, 536, 569
AluI AGCT 6 cut(s) 73, 88, 176, 340, 536, 569
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 291, 370, 466
AlwI GGATC 1 cut(s) 147
AlwNI CAGNNNCTG 1 cut(s) 628
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 359, 463, 533
AspS9I GGNCC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 126
BalI TGGCCA 1 cut(s) 67
BauI CACGAG 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 3 cut(s) 346, 475, 545
BceAI ACGGC 1 cut(s) 347
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 3 cut(s) 291, 370, 466
BisI GCNGC 3 cut(s) 360, 464, 534
BlsI GCNGC 3 cut(s) 361, 465, 535
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 126
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 2 cut(s) 95, 650
Bpu10I CCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 5, 134
BsaWI WCCGGW 2 cut(s) 322, 345
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 135, 136, 628
Bse1I ACTGG 2 cut(s) 217, 622
Bse3DI GCAATG 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 5, 134
BseGI GGATG 3 cut(s) 227, 251, 319
BseLI CCNNNNNNNGG 4 cut(s) 63, 135, 136, 628
BseMI GCAATG 1 cut(s) 610
BseNI ACTGG 2 cut(s) 217, 622
BseXI GCAGC 3 cut(s) 346, 475, 545
BshFI GGCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 3 cut(s) 134, 323, 346
BslFI GGGAC 2 cut(s) 431, 633
BslI CCNNNNNNNGG 4 cut(s) 63, 135, 136, 628
BsmAI GTCTC 3 cut(s) 291, 370, 466
BsmBI CGTCTC 1 cut(s) 370
BsmFI GGGAC 2 cut(s) 431, 633
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 139, 547, 633
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 610
BsrI ACTGG 2 cut(s) 217, 622
BssECI CCNNGG 2 cut(s) 5, 134
BssMI GATC 3 cut(s) 139, 547, 633
BssNAI GTATAC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 238
Bst1107I GTATAC 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 2 cut(s) 5, 250
BstBAI YACGTR 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 65, 584
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 3 cut(s) 227, 251, 319
BstKTI GATC 3 cut(s) 142, 550, 636
BstMAI GTCTC 3 cut(s) 291, 370, 466
BstMBI GATC 3 cut(s) 139, 547, 633
BstMWI GCNNNNNNNGC 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 3 cut(s) 346, 475, 545
BstV2I GAAGAC 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 520
BstZ17I GTATAC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 67
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 3 cut(s) 227, 251, 319
BtsIMutI CAGTG 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 65, 584
CaiI CAGNNNCTG 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 126
CviAII CATG 5 cut(s) 35, 208, 298, 314, 652
CviJI RGCY 9 cut(s) 67, 73, 88, 121, 176, 340, 359, 536, 569
CviKI_1 RGCY 9 cut(s) 67, 73, 88, 121, 176, 340, 359, 536, 569
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 141, 549, 635
DpnII GATC 3 cut(s) 139, 547, 633
DrdI GACNNNNNNGTC 1 cut(s) 480
DseDI GACNNNNNNGTC 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 5, 250
EarI CTCTTC 2 cut(s) 5, 250
Eco47I GGWCC 1 cut(s) 126
Eco72I CACGTG 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 5 cut(s) 38, 211, 301, 317, 655
FaiI YATR 9 cut(s) 36, 98, 156, 209, 267, 299, 315, 646, 653
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 459, 491
FaqI GGGAC 2 cut(s) 431, 633
FatI CATG 5 cut(s) 34, 207, 297, 313, 651
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 3 cut(s) 360, 464, 534
FokI GGATG 3 cut(s) 214, 238, 306
Fsp4HI GCNGC 3 cut(s) 360, 464, 534
GluI GCNGC 3 cut(s) 360, 464, 534
GsuI CTGGAG 2 cut(s) 95, 650
HaeIII GGCC 1 cut(s) 67
HapII CCGG 3 cut(s) 134, 323, 346
Hin1II CATG 5 cut(s) 38, 211, 301, 317, 655
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 3 cut(s) 284, 419, 430
HpaII CCGG 3 cut(s) 134, 323, 346
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 53, 267, 334
Hpy188I TCNGA 3 cut(s) 9, 400, 573
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 3 cut(s) 53, 267, 334
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 2 cut(s) 49, 506
HpyCH4V TGCA 6 cut(s) 43, 463, 494, 533, 610, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 588
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 2 cut(s) 49, 506
Hsp92II CATG 5 cut(s) 38, 211, 301, 317, 655
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 139, 547, 633
LguI GCTCTTC 1 cut(s) 250
Lsp1109I GCAGC 3 cut(s) 346, 475, 545
MaeII ACGT 2 cut(s) 49, 506
MalI GATC 3 cut(s) 141, 549, 635
MboI GATC 3 cut(s) 139, 547, 633
MboII GAAGA 4 cut(s) 22, 92, 237, 438
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 2 cut(s) 424, 450
MluNI TGGCCA 1 cut(s) 67
MlyI GAGTC 2 cut(s) 293, 413
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 3 cut(s) 134, 323, 346
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 588
NciI CCSGG 1 cut(s) 135
NdeII GATC 3 cut(s) 139, 547, 633
NlaIII CATG 5 cut(s) 38, 211, 301, 317, 655
NlaIV GGNNCC 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 430
PflMI CCANNNNNTGG 2 cut(s) 63, 628
PkrI GCNGC 3 cut(s) 361, 465, 535
PleI GAGTC 2 cut(s) 292, 413
PmaCI CACGTG 1 cut(s) 507
PmlI CACGTG 1 cut(s) 507
PpsI GAGTC 2 cut(s) 292, 413
Ppu21I YACGTR 1 cut(s) 507
PpuMI RGGWCCY 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 126
PspCI CACGTG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 126
PspPPI RGGWCCY 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 3 cut(s) 360, 464, 534
Sau3AI GATC 3 cut(s) 139, 547, 633
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 2 cut(s) 293, 413
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 245
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 2 cut(s) 424, 450
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 2 cut(s) 52, 509
TaqI TCGA 3 cut(s) 293, 354, 553
TasI AATT 2 cut(s) 424, 450
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 629
TseI GCWGC 3 cut(s) 359, 463, 533
TspDTI ATGAA 3 cut(s) 171, 224, 330
TspRI CASTG 1 cut(s) 629
Van91I CCANNNNNTGG 2 cut(s) 63, 628
VpaK11BI GGWCC 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.