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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 281 |
| AccII | CGCG | 1 cut(s) | 219 |
| AciI | CCGC | 1 cut(s) | 289 |
| AclWI | GGATC | 2 cut(s) | 133, 149 |
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AcsI | RAATTY | 1 cut(s) | 469 |
| AcuI | CTGAAG | 1 cut(s) | 216 |
| AfaI | GTAC | 3 cut(s) | 324, 403, 463 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 281 |
| AflII | CTTAAG | 1 cut(s) | 248 |
| AjiI | CACGTC | 1 cut(s) | 370 |
| AluBI | AGCT | 1 cut(s) | 459 |
| AluI | AGCT | 1 cut(s) | 459 |
| Alw21I | GWGCWC | 1 cut(s) | 83 |
| Alw26I | GTCTC | 1 cut(s) | 22 |
| AlwI | GGATC | 2 cut(s) | 133, 149 |
| Ama87I | CYCGRG | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 261 |
| ApeKI | GCWGC | 3 cut(s) | 286, 440, 443 |
| ApoI | RAATTY | 1 cut(s) | 469 |
| AseI | ATTAAT | 1 cut(s) | 116 |
| AspLEI | GCGC | 1 cut(s) | 381 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 1 cut(s) | 346 |
| AvaI | CYCGRG | 1 cut(s) | 76 |
| AvaII | GGWCC | 1 cut(s) | 271 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 306, 338 |
| BbsI | GAAGAC | 1 cut(s) | 76 |
| Bbv12I | GWGCWC | 1 cut(s) | 83 |
| BbvI | GCAGC | 3 cut(s) | 298, 427, 430 |
| BccI | CCATC | 2 cut(s) | 150, 275 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 1 cut(s) | 22 |
| BfmI | CTRYAG | 1 cut(s) | 444 |
| BfrI | CTTAAG | 1 cut(s) | 248 |
| BisI | GCNGC | 3 cut(s) | 287, 441, 444 |
| BlsI | GCNGC | 3 cut(s) | 288, 442, 445 |
| BmcAI | AGTACT | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 271 |
| BmeT110I | CYCGRG | 1 cut(s) | 76 |
| BmgBI | CACGTC | 1 cut(s) | 370 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmiI | GGNNCC | 1 cut(s) | 273 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 2 cut(s) | 24, 112 |
| BpiI | GAAGAC | 1 cut(s) | 76 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaWI | WCCGGW | 1 cut(s) | 94 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 281 |
| Bse1I | ACTGG | 1 cut(s) | 227 |
| BseGI | GGATG | 3 cut(s) | 15, 103, 342 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 281 |
| BseNI | ACTGG | 1 cut(s) | 227 |
| BseRI | GAGGAG | 1 cut(s) | 38 |
| BseXI | GCAGC | 3 cut(s) | 298, 427, 430 |
| Bsh1236I | CGCG | 1 cut(s) | 219 |
| BshFI | GGCC | 1 cut(s) | 263 |
| BsiHKAI | GWGCWC | 1 cut(s) | 83 |
| BsiHKCI | CYCGRG | 1 cut(s) | 76 |
| BsiSI | CCGG | 2 cut(s) | 20, 95 |
| BslFI | GGGAC | 1 cut(s) | 257 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 281 |
| BsmAI | GTCTC | 1 cut(s) | 22 |
| BsmFI | GGGAC | 1 cut(s) | 257 |
| BsnI | GGCC | 1 cut(s) | 263 |
| BsoBI | CYCGRG | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 83 |
| Bsp143I | GATC | 2 cut(s) | 138, 154 |
| Bsp68I | TCGCGA | 1 cut(s) | 219 |
| BspACI | CCGC | 1 cut(s) | 289 |
| BspANI | GGCC | 1 cut(s) | 263 |
| BspFNI | CGCG | 1 cut(s) | 219 |
| BspLI | GGNNCC | 1 cut(s) | 273 |
| BspMAI | CTGCAG | 1 cut(s) | 448 |
| BspPI | GGATC | 2 cut(s) | 133, 149 |
| BspTI | CTTAAG | 1 cut(s) | 248 |
| BsrI | ACTGG | 1 cut(s) | 227 |
| BssMI | GATC | 2 cut(s) | 138, 154 |
| Bst4CI | ACNGT | 2 cut(s) | 184, 355 |
| BstAFI | CTTAAG | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 1 cut(s) | 418 |
| BstF5I | GGATG | 3 cut(s) | 15, 103, 342 |
| BstFNI | CGCG | 1 cut(s) | 219 |
| BstHHI | GCGC | 1 cut(s) | 381 |
| BstKTI | GATC | 2 cut(s) | 141, 157 |
| BstMAI | GTCTC | 1 cut(s) | 22 |
| BstMBI | GATC | 2 cut(s) | 138, 154 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 260, 387 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSFI | CTRYAG | 1 cut(s) | 444 |
| BstUI | CGCG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 3 cut(s) | 298, 427, 430 |
| BstV2I | GAAGAC | 1 cut(s) | 76 |
| BstX2I | RGATCY | 1 cut(s) | 138 |
| BstYI | RGATCY | 1 cut(s) | 138 |
| BsuRI | GGCC | 1 cut(s) | 263 |
| BtrI | CACGTC | 1 cut(s) | 370 |
| BtsCI | GGATG | 3 cut(s) | 15, 103, 342 |
| BtuMI | TCGCGA | 1 cut(s) | 219 |
| Cac8I | GCNNGC | 1 cut(s) | 418 |
| CfoI | GCGC | 1 cut(s) | 381 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| CseI | GACGC | 1 cut(s) | 39 |
| Csp6I | GTAC | 3 cut(s) | 323, 402, 462 |
| CviAII | CATG | 1 cut(s) | 265 |
| CviJI | RGCY | 7 cut(s) | 254, 263, 365, 420, 440, 459, 495 |
| CviKI_1 | RGCY | 7 cut(s) | 254, 263, 365, 420, 440, 459, 495 |
| CviQI | GTAC | 3 cut(s) | 323, 402, 462 |
| DpnI | GATC | 2 cut(s) | 140, 156 |
| DpnII | GATC | 2 cut(s) | 138, 154 |
| DraI | TTTAAA | 1 cut(s) | 46 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| Eco47I | GGWCC | 1 cut(s) | 271 |
| Eco57I | CTGAAG | 1 cut(s) | 216 |
| Eco88I | CYCGRG | 1 cut(s) | 76 |
| FaeI | CATG | 1 cut(s) | 268 |
| FaiI | YATR | 7 cut(s) | 174, 239, 243, 245, 266, 312, 362 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 189, 221 |
| FaqI | GGGAC | 1 cut(s) | 257 |
| FatI | CATG | 1 cut(s) | 264 |
| FauNDI | CATATG | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 3 cut(s) | 287, 441, 444 |
| FokI | GGATG | 3 cut(s) | 2, 90, 329 |
| Fsp4HI | GCNGC | 3 cut(s) | 287, 441, 444 |
| GlaI | GCGC | 1 cut(s) | 380 |
| GluI | GCNGC | 3 cut(s) | 287, 441, 444 |
| HaeIII | GGCC | 1 cut(s) | 263 |
| HapII | CCGG | 2 cut(s) | 20, 95 |
| HgaI | GACGC | 1 cut(s) | 39 |
| HhaI | GCGC | 1 cut(s) | 381 |
| Hin1II | CATG | 1 cut(s) | 268 |
| Hin6I | GCGC | 1 cut(s) | 379 |
| HinP1I | GCGC | 1 cut(s) | 379 |
| HinfI | GANTC | 2 cut(s) | 4, 373 |
| HpaII | CCGG | 2 cut(s) | 20, 95 |
| HphI | GGTGA | 1 cut(s) | 346 |
| Hpy166II | GTNNAC | 1 cut(s) | 323 |
| Hpy188I | TCNGA | 2 cut(s) | 196, 303 |
| Hpy188III | TCNNGA | 2 cut(s) | 124, 218 |
| Hpy8I | GTNNAC | 1 cut(s) | 323 |
| Hpy99I | CGWCG | 3 cut(s) | 55, 219, 371 |
| HpyAV | CCTTC | 1 cut(s) | 18 |
| HpyCH4III | ACNGT | 2 cut(s) | 184, 355 |
| HpyCH4IV | ACGT | 1 cut(s) | 369 |
| HpyCH4V | TGCA | 1 cut(s) | 446 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 260, 387 |
| HpySE526I | ACGT | 1 cut(s) | 369 |
| Hsp92II | CATG | 1 cut(s) | 268 |
| HspAI | GCGC | 1 cut(s) | 379 |
| Kzo9I | GATC | 2 cut(s) | 138, 154 |
| LpnPI | CCDG | 7 cut(s) | 25, 33, 108, 208, 288, 341, 372 |
| Lsp1109I | GCAGC | 3 cut(s) | 298, 427, 430 |
| LweI | GCATC | 2 cut(s) | 24, 112 |
| MaeII | ACGT | 1 cut(s) | 369 |
| MaeIII | GTNAC | 3 cut(s) | 230, 334, 370 |
| MalI | GATC | 2 cut(s) | 140, 156 |
| MboI | GATC | 2 cut(s) | 138, 154 |
| MboII | GAAGA | 3 cut(s) | 81, 290, 326 |
| MflI | RGATCY | 1 cut(s) | 138 |
| MhlI | GDGCHC | 1 cut(s) | 83 |
| MluCI | AATT | 3 cut(s) | 113, 297, 469 |
| MlyI | GAGTC | 2 cut(s) | 13, 367 |
| MnlI | CCTC | 3 cut(s) | 16, 120, 430 |
| MseI | TTAA | 5 cut(s) | 45, 116, 207, 249, 489 |
| MspA1I | CMGCKG | 1 cut(s) | 289 |
| MspCI | CTTAAG | 1 cut(s) | 248 |
| MspI | CCGG | 2 cut(s) | 20, 95 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvnI | CGCG | 1 cut(s) | 219 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 260, 387 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeI | CATATG | 1 cut(s) | 243 |
| NdeII | GATC | 2 cut(s) | 138, 154 |
| NlaIII | CATG | 1 cut(s) | 268 |
| NlaIV | GGNNCC | 1 cut(s) | 273 |
| NmuCI | GTSAC | 2 cut(s) | 334, 370 |
| NruI | TCGCGA | 1 cut(s) | 219 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 281 |
| PfoI | TCCNGGA | 1 cut(s) | 18 |
| PkrI | GCNGC | 3 cut(s) | 288, 442, 445 |
| PleI | GAGTC | 2 cut(s) | 12, 367 |
| PpsI | GAGTC | 2 cut(s) | 12, 367 |
| PshBI | ATTAAT | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 1 cut(s) | 273 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| PstI | CTGCAG | 1 cut(s) | 448 |
| PsuI | RGATCY | 1 cut(s) | 138 |
| RruI | TCGCGA | 1 cut(s) | 219 |
| RsaI | GTAC | 3 cut(s) | 324, 403, 463 |
| RsaNI | GTAC | 3 cut(s) | 323, 402, 462 |
| SaqAI | TTAA | 5 cut(s) | 45, 116, 207, 249, 489 |
| SatI | GCNGC | 3 cut(s) | 287, 441, 444 |
| Sau3AI | GATC | 2 cut(s) | 138, 154 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| ScaI | AGTACT | 1 cut(s) | 403 |
| SchI | GAGTC | 2 cut(s) | 13, 367 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 1 cut(s) | 83 |
| SetI | ASST | 2 cut(s) | 372, 461 |
| SfaNI | GCATC | 2 cut(s) | 24, 112 |
| SfcI | CTRYAG | 1 cut(s) | 444 |
| SinI | GGWCC | 1 cut(s) | 271 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| Sse9I | AATT | 3 cut(s) | 113, 297, 469 |
| SsiI | CCGC | 1 cut(s) | 289 |
| SspI | AATATT | 1 cut(s) | 120 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 2 cut(s) | 184, 355 |
| TaiI | ACGT | 1 cut(s) | 372 |
| TasI | AATT | 3 cut(s) | 113, 297, 469 |
| TatI | WGTACW | 2 cut(s) | 401, 461 |
| Tru1I | TTAA | 5 cut(s) | 45, 116, 207, 249, 489 |
| Tru9I | TTAA | 5 cut(s) | 45, 116, 207, 249, 489 |
| TseFI | GTSAC | 2 cut(s) | 334, 370 |
| TseI | GCWGC | 3 cut(s) | 286, 440, 443 |
| Tsp45I | GTSAC | 2 cut(s) | 334, 370 |
| TspDTI | ATGAA | 2 cut(s) | 125, 327 |
| TspGWI | ACGGA | 1 cut(s) | 203 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 281 |
| Vha464I | CTTAAG | 1 cut(s) | 248 |
| VpaK11BI | GGWCC | 1 cut(s) | 271 |
| VspI | ATTAAT | 1 cut(s) | 116 |
| XapI | RAATTY | 1 cut(s) | 469 |
| ZrmI | AGTACT | 1 cut(s) | 403 |