Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000056

Physical Location & Seq

Genomic Coordinates Reverse (-)

10169668 .. 10172643

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGGCGCGCTTTGCCTTTGCGCTAGCATGTGCCCTAGCTTTGTTGGCTTCTTCAGTAGCCTCTGCTGCAATAGTCGAGCATTCTTTTCATGTGAATAACTTGACTGTTACGCGGCTATGCTATAATCAACTGATAACCGCAGTTAATGGGGAGTATCCAGGTCCAACAATAAGGGCAAGAGAGGGCGACACTCTTGTTGTTCACGTCTTGAACCAGTCCCCCTATAACATTACTATTCATTGGCATGGGATCTTTCAGCTTCTAAGTGCATGGGCAGATGGACCTGCATATGTAACCCAGTGCCCTATACTTCCTGGACAAAGCTATACCTACAGATTCAAAATCATCGGACAAGAAGGTACTCTCTGGTGGCATGCACATGTTTCATGGCTCCGTGCAACAGTCTATGGCGCCCTAATAATCCAGCCGAGATCCACTCGATCCTACCCATTCCCTAAACCCTACCAGGACGTACCGATTATGTTAGGAGAGTGGTGGAATGCTAGTGTCGTTGACGTTGAGAATCAAGCACAAGCCACCGGAGGTGCTCCGGACGATTCTGATGCATACACGATCAATGGACTACCTGGCGACTTTTATAATTGCTCTCAAAATCAGACATATAAGCTGAATGTGGTGAGGGGAAAGACCTACATGCTGCGCATAATCAACGCTGCACTCAATAACCAGTTCTTCTTCGGCATAGCCAAACACAACATGACAGTTGTAGCCGTCGACGCCTCCTACACCAAACCATACGTCACAGAAGTCGTCGTGGTCGCGCCGGGTCAGACCACCGATGTTCTCATCACCACCAACCAGCCCGTCGGATCTTACTACATGGCCGCCACTCCTTACGCTAGCTCAAGCATACCATTTCCTAACACGACCACACGCGGAGTCCTCGTCTACAATGGCTCCAAGTCATCGAGCGCCCCGCTCATGCCTGCCCTACCTAATCCCCAAGACACGGCAACGGCCCATAAATTCTCCAGCAATCTGACGGGGCTAGCCGGTGGGCCCCAGTGGGTGCCGGTTCCGCTCAAGGTGGACGAGCACATGTTCGTGACAATAGGTGTGAATCTGGATAAATGTGCCGAAGGTGTCACATGTCAAGGTCCGCTTAACAACAGATTGTCCGCGAGCATGAACAACGAGTCCTTCCAGCTGCCTACAACACTGTCAATGCTACAAGCATCCTTTTACAACGTGAGCGGGATTTACACCACCGATTTTCCCGACAATCCTCCGGTCGAGTTTGACTACACGAACGAAAACATCAGCCTGAACCTAGATCTGATCTTCGCTCCAAAATCTACCAAAGTCAAGAAGTTGAAGTACAACTCAACTGTAGAGATCGTGCTGCAGAACACGGCGTTTTTATCAATCGAGAATCACCCTATTCATATTCATGGTTTCAACTTCCACGTATTAGCTCAAGGTTTTGGAAATTATGACCCCGTTAACGATAGCAAGAAATTCAATCTTGTTAACCCACAAATTCGTAACACAATTGGTGTTCCTGTCGGAGGATGGGCGGTGATCAGATTTCAAGCAAATAATCCAGGTATATGGATGGCGCATTGTCATCTGGACGTGCACTTGCCGTGGGGTCTGGCCATGGCTTTTGAGGTTGAAAATGGACCAACTGTTGCATCTACTTTGCCTCCGCCACCGCTCGATCTACCCAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

565

Amino Acids

61.98

Weight (kDa)

6.37

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	31 - 145	2.4e-41	Multicopper oxidase
Cu-oxidase	PF00394	157 - 307	2.7e-44	Multicopper oxidase
Cu-oxidase_2	PF07731	411 - 547	9.5e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74620
fragaria_vesca	FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica	MD14G1195700.v1.1
prunus_persica	Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis	pycom17g01390
rosa_chinensis	RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata	RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora	Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii	Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa	Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha	Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana	Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
Acc16I	TGCGCA	1 cut(s)	662
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	410, 1030
AccBSI	CCGCTC	4 cut(s)	940, 1042, 1215, 1678
AccI	GTMKAC	2 cut(s)	735, 909
AccII	CGCG	5 cut(s)	7, 112, 782, 897, 1142
AccIII	TCCGGA	1 cut(s)	550
AclWI	GGATC	4 cut(s)	257, 426, 435, 838
AcoI	YGGCCR	2 cut(s)	843, 1617
AcsI	RAATTY	3 cut(s)	986, 1478, 1500
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	2 cut(s)	411, 738
AfaI	GTAC	3 cut(s)	361, 474, 1340
AfiI	CCNNNNNNNGG	2 cut(s)	970, 1529
AflIII	ACRYGT	3 cut(s)	379, 1059, 1109
AgsI	TTSAA	7 cut(s)	211, 340, 1336, 1420, 1483, 1553, 1637
AjiI	CACGTC	2 cut(s)	205, 1597
AjnI	CCWGG	5 cut(s)	157, 313, 465, 586, 1564
AloI	GAACNNNNNNTCC	2 cut(s)	1142, 1174
AluBI	AGCT	7 cut(s)	38, 259, 324, 628, 864, 1168, 1436
AluI	AGCT	7 cut(s)	38, 259, 324, 628, 864, 1168, 1436
Alw21I	GWGCWC	3 cut(s)	550, 1059, 1602
Alw44I	GTGCAC	1 cut(s)	1598
AlwI	GGATC	4 cut(s)	257, 426, 435, 838
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	4 cut(s)	843, 978, 1019, 1617
ApaI	GGGCCC	1 cut(s)	1023
ApaLI	GTGCAC	1 cut(s)	1598
ApeKI	GCWGC	5 cut(s)	65, 658, 674, 1168, 1363
ApoI	RAATTY	3 cut(s)	986, 1478, 1500
ArsI	GACNNNNNNTTYG	2 cut(s)	744, 776
AspLEI	GCGC	8 cut(s)	7, 9, 22, 413, 663, 784, 935, 1582
AspS9I	GGNCC	7 cut(s)	161, 281, 979, 1019, 1020, 1118, 1643
AsuC2I	CCSGG	1 cut(s)	786
AsuHPI	GGTGA	4 cut(s)	649, 802, 1388, 1552
AsuNHI	GCTAGC	3 cut(s)	22, 860, 1009
AvaII	GGWCC	4 cut(s)	161, 281, 1118, 1643
BaeGI	GKGCMC	4 cut(s)	34, 305, 1023, 1602
BalI	TGGCCA	1 cut(s)	1619
BanI	GGYRCC	2 cut(s)	410, 1030
BanII	GRGCYC	1 cut(s)	1023
BarI	GAAGNNNNNNTAC	2 cut(s)	1322, 1354
Bbv12I	GWGCWC	3 cut(s)	550, 1059, 1602
BbvI	GCAGC	5 cut(s)	52, 645, 661, 1155, 1350
BccI	CCATC	3 cut(s)	272, 1527, 1570
BceAI	ACGGC	5 cut(s)	716, 987, 993, 1389, 1591
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	5 cut(s)	159, 315, 467, 588, 1566
BciVI	GTATCC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	1542
BcnI	CCSGG	1 cut(s)	786
BfaI	CTAG	6 cut(s)	23, 35, 504, 861, 1010, 1292
BfmI	CTRYAG	3 cut(s)	331, 1350, 1364
BfoI	RGCGCY	2 cut(s)	414, 936
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	1294
BisI	GCNGC	7 cut(s)	66, 113, 659, 675, 846, 1169, 1364
BlsI	GCNGC	7 cut(s)	67, 114, 660, 676, 847, 1170, 1365
Bme1390I	CCNGG	6 cut(s)	159, 315, 467, 588, 786, 1566
Bme18I	GGWCC	4 cut(s)	161, 281, 1118, 1643
BmgBI	CACGTC	2 cut(s)	205, 1597
BmgT120I	GGNCC	7 cut(s)	161, 281, 979, 1019, 1020, 1118, 1643
BmiI	GGNNCC	7 cut(s)	392, 412, 919, 1021, 1022, 1032, 1038
BmrFI	CCNGG	6 cut(s)	159, 315, 467, 588, 786, 1566
BmrI	ACTGGG	2 cut(s)	292, 1018
BmsI	GCATC	3 cut(s)	553, 1205, 1664
BmtI	GCTAGC	3 cut(s)	26, 864, 1013
BmuI	ACTGGG	2 cut(s)	292, 1018
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	1 cut(s)	976
BpuEI	CTTGAG	3 cut(s)	850, 1028, 1422
BpuMI	CCSGG	1 cut(s)	786
BsaAI	YACGTR	1 cut(s)	1429
BsaHI	GRCGYC	2 cut(s)	411, 738
BsaJI	CCNNGG	2 cut(s)	1607, 1620
BsaWI	WCCGGW	3 cut(s)	539, 550, 1249
BsaXI	ACNNNNNCTCC	6 cut(s)	891, 902, 921, 932, 1651, 1681
Bsc4I	CCNNNNNNNGG	2 cut(s)	970, 1529
Bse118I	RCCGGY	2 cut(s)	1013, 1033
Bse1I	ACTGG	4 cut(s)	214, 298, 688, 1024
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	5 cut(s)	159, 315, 467, 588, 1566
BseDI	CCNNGG	2 cut(s)	1607, 1620
BseGI	GGATG	3 cut(s)	1196, 1538, 1581
BseLI	CCNNNNNNNGG	2 cut(s)	970, 1529
BseNI	ACTGG	4 cut(s)	214, 298, 688, 1024
BsePI	GCGCGC	1 cut(s)	5
BseSI	GKGCMC	4 cut(s)	34, 305, 1023, 1602
BseXI	GCAGC	5 cut(s)	52, 645, 661, 1155, 1350
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	5 cut(s)	7, 112, 782, 897, 1142
Bsh1285I	CGRYCG	1 cut(s)	1254
BshFI	GGCC	4 cut(s)	845, 980, 1021, 1619
BshNI	GGYRCC	2 cut(s)	410, 1030
BsiEI	CGRYCG	1 cut(s)	1254
BsiHKAI	GWGCWC	3 cut(s)	550, 1059, 1602
BsiSI	CCGG	6 cut(s)	540, 551, 785, 1014, 1034, 1250
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	970, 1529
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	2 cut(s)	79, 505
BsnI	GGCC	4 cut(s)	845, 980, 1021, 1619
Bsp120I	GGGCCC	1 cut(s)	1019
Bsp1286I	GDGCHC	6 cut(s)	34, 305, 550, 1023, 1059, 1602
Bsp13I	TCCGGA	1 cut(s)	550
Bsp19I	CCATGG	1 cut(s)	1620
BspANI	GGCC	4 cut(s)	845, 980, 1021, 1619
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	5 cut(s)	7, 112, 782, 897, 1142
BspLI	GGNNCC	7 cut(s)	392, 412, 919, 1021, 1022, 1032, 1038
BspMAI	CTGCAG	1 cut(s)	1368
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	3 cut(s)	26, 864, 1013
BspPI	GGATC	4 cut(s)	257, 426, 435, 838
BspT107I	GGYRCC	2 cut(s)	410, 1030
BsrBI	CCGCTC	4 cut(s)	940, 1042, 1215, 1678
BsrFI	RCCGGY	2 cut(s)	1013, 1033
BsrI	ACTGG	4 cut(s)	214, 298, 688, 1024
BssAI	RCCGGY	2 cut(s)	1013, 1033
BssECI	CCNNGG	2 cut(s)	1607, 1620
BssHII	GCGCGC	1 cut(s)	5
BssNI	GRCGYC	2 cut(s)	411, 738
BssT1I	CCWWGG	1 cut(s)	1620
Bst2UI	CCWGG	5 cut(s)	159, 315, 467, 588, 1566
Bst4CI	ACNGT	6 cut(s)	106, 403, 724, 1182, 1351, 1651
BstACI	GRCGYC	2 cut(s)	411, 738
BstBAI	YACGTR	1 cut(s)	1429
BstC8I	GCNNGC	7 cut(s)	7, 24, 375, 862, 948, 1011, 1144
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	2 cut(s)	1607, 1620
BstENI	CCTNNNNNAGG	1 cut(s)	1527
BstF5I	GGATG	3 cut(s)	1196, 1538, 1581
BstFNI	CGCG	5 cut(s)	7, 112, 782, 897, 1142
BstH2I	RGCGCY	2 cut(s)	414, 936
BstHHI	GCGC	8 cut(s)	7, 9, 22, 413, 663, 784, 935, 1582
BstMCI	CGRYCG	1 cut(s)	1254
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 44, 65, 737, 1039
BstNI	CCWGG	5 cut(s)	159, 315, 467, 588, 1566
BstNSI	RCATGY	6 cut(s)	30, 377, 383, 658, 1063, 1113
BstSCI	CCNGG	6 cut(s)	157, 313, 465, 586, 784, 1564
BstSFI	CTRYAG	3 cut(s)	331, 1350, 1364
BstSLI	GKGCMC	4 cut(s)	34, 305, 1023, 1602
BstUI	CGCG	5 cut(s)	7, 112, 782, 897, 1142
BstV1I	GCAGC	5 cut(s)	52, 645, 661, 1155, 1350
BstX2I	RGATCY	4 cut(s)	249, 431, 830, 1294
BstXI	CCANNNNNNTGG	1 cut(s)	1572
BstYI	RGATCY	4 cut(s)	249, 431, 830, 1294
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	845, 980, 1021, 1619
BtgI	CCRYGG	2 cut(s)	1607, 1620
BtrI	CACGTC	2 cut(s)	205, 1597
BtsCI	GGATG	3 cut(s)	1196, 1538, 1581
BtsIMutI	CAGTG	3 cut(s)	305, 1031, 1178
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	7 cut(s)	7, 24, 375, 862, 948, 1011, 1144
CfoI	GCGC	8 cut(s)	7, 9, 22, 413, 663, 784, 935, 1582
Cfr10I	RCCGGY	2 cut(s)	1013, 1033
Cfr13I	GGNCC	7 cut(s)	161, 281, 979, 1019, 1020, 1118, 1643
CseI	GACGC	1 cut(s)	746
Csp6I	GTAC	3 cut(s)	360, 473, 1339
CviQI	GTAC	3 cut(s)	360, 473, 1339
DdeI	CTNAG	1 cut(s)	263
DinI	GGCGCC	1 cut(s)	412
EaeI	YGGCCR	2 cut(s)	843, 1617
EciI	GGCGGA	1 cut(s)	1659
Eco130I	CCWWGG	1 cut(s)	1620
Eco24I	GRGCYC	1 cut(s)	1023
Eco47I	GGWCC	4 cut(s)	161, 281, 1118, 1643
Eco57I	CTGAAG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	1527
EcoO109I	RGGNCCY	1 cut(s)	1020
EcoRII	CCWGG	5 cut(s)	157, 313, 465, 586, 1564
EcoT14I	CCWWGG	1 cut(s)	1620
EcoT22I	ATGCAT	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	1023
EgeI	GGCGCC	1 cut(s)	412
EheI	GGCGCC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	1620
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FaqI	GGGAC	1 cut(s)	202
FauI	CCCGC	2 cut(s)	945, 1208
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	1542
FblI	GTMKAC	2 cut(s)	735, 909
Fnu4HI	GCNGC	7 cut(s)	66, 113, 659, 675, 846, 1169, 1364
FokI	GGATG	3 cut(s)	1183, 1545, 1588
FriOI	GRGCYC	1 cut(s)	1023
Fsp4HI	GCNGC	7 cut(s)	66, 113, 659, 675, 846, 1169, 1364
FspBI	CTAG	6 cut(s)	23, 35, 504, 861, 1010, 1292
FspI	TGCGCA	1 cut(s)	662
GlaI	GCGC	8 cut(s)	6, 8, 21, 412, 662, 783, 934, 1581
GluI	GCNGC	7 cut(s)	66, 113, 659, 675, 846, 1169, 1364
GsuI	CTGGAG	1 cut(s)	976
HaeII	RGCGCY	2 cut(s)	414, 936
HaeIII	GGCC	4 cut(s)	845, 980, 1021, 1619
HapII	CCGG	6 cut(s)	540, 551, 785, 1014, 1034, 1250
HgaI	GACGC	1 cut(s)	746
HhaI	GCGC	8 cut(s)	7, 9, 22, 413, 663, 784, 935, 1582
Hin1I	GRCGYC	2 cut(s)	411, 738
Hin6I	GCGC	8 cut(s)	5, 7, 20, 411, 661, 782, 933, 1580
HinP1I	GCGC	8 cut(s)	5, 7, 20, 411, 661, 782, 933, 1580
HincII	GTYRAC	4 cut(s)	514, 736, 1465, 1492
HindII	GTYRAC	4 cut(s)	514, 736, 1465, 1492
HinfI	GANTC	7 cut(s)	336, 523, 557, 900, 1081, 1157, 1393
HpaI	GTTAAC	2 cut(s)	1465, 1492
HpaII	CCGG	6 cut(s)	540, 551, 785, 1014, 1034, 1250
HphI	GGTGA	4 cut(s)	649, 802, 1388, 1552
Hpy166II	GTNNAC	8 cut(s)	202, 514, 736, 910, 1051, 1465, 1492, 1600
Hpy188I	TCNGA	9 cut(s)	350, 562, 618, 792, 830, 1002, 1299, 1529, 1547
Hpy188III	TCNNGA	8 cut(s)	208, 551, 1066, 1085, 1238, 1327, 1390, 1592
Hpy8I	GTNNAC	8 cut(s)	202, 514, 736, 910, 1051, 1465, 1492, 1600
Hpy99I	CGWCG	4 cut(s)	737, 740, 776, 830
HpyAV	CCTTC	3 cut(s)	350, 1094, 1171
HpyCH4III	ACNGT	6 cut(s)	106, 403, 724, 1182, 1351, 1651
HpyCH4IV	ACGT	7 cut(s)	204, 471, 516, 759, 1209, 1428, 1596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 44, 65, 737, 1039
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	7 cut(s)	204, 471, 516, 759, 1209, 1428, 1596
Hsp92I	GRCGYC	2 cut(s)	411, 738
HspAI	GCGC	8 cut(s)	5, 7, 20, 411, 661, 782, 933, 1580
KasI	GGCGCC	1 cut(s)	410
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	1542
KspAI	GTTAAC	2 cut(s)	1465, 1492
LmnI	GCTCC	4 cut(s)	396, 553, 923, 1312
Lsp1109I	GCAGC	5 cut(s)	52, 645, 661, 1155, 1350
LweI	GCATC	3 cut(s)	553, 1205, 1664
MaeI	CTAG	6 cut(s)	23, 35, 504, 861, 1010, 1292
MaeII	ACGT	7 cut(s)	204, 471, 516, 759, 1209, 1428, 1596
MaeIII	GTNAC	6 cut(s)	106, 292, 760, 1066, 1105, 1505
MbiI	CCGCTC	4 cut(s)	940, 1042, 1215, 1678
MboII	GAAGA	4 cut(s)	42, 685, 688, 1294
MfeI	CAATTG	1 cut(s)	1512
MflI	RGATCY	4 cut(s)	249, 431, 830, 1294
MhlI	GDGCHC	6 cut(s)	34, 305, 550, 1023, 1059, 1602
MlsI	TGGCCA	1 cut(s)	1619
MluCI	AATT	6 cut(s)	601, 986, 1450, 1478, 1500, 1512
MluNI	TGGCCA	1 cut(s)	1619
Mly113I	GGCGCC	1 cut(s)	411
MlyI	GAGTC	2 cut(s)	909, 1166
MmeI	TCCRAC	3 cut(s)	188, 808, 1507
Mox20I	TGGCCA	1 cut(s)	1619
Mph1103I	ATGCAT	1 cut(s)	568
MroI	TCCGGA	1 cut(s)	550
MscI	TGGCCA	1 cut(s)	1619
MseI	TTAA	5 cut(s)	144, 1125, 1464, 1491, 1696
MslI	CAYNNNNRTG	4 cut(s)	243, 378, 1064, 1410
Msp20I	TGGCCA	1 cut(s)	1619
MspA1I	CMGCKG	1 cut(s)	1168
MspI	CCGG	6 cut(s)	540, 551, 785, 1014, 1034, 1250
MspR9I	CCNGG	6 cut(s)	159, 315, 467, 588, 786, 1566
MunI	CAATTG	1 cut(s)	1512
Mva1269I	GAATGC	2 cut(s)	79, 505
MvaI	CCWGG	5 cut(s)	159, 315, 467, 588, 1566
MvnI	CGCG	5 cut(s)	7, 112, 782, 897, 1142
MwoI	GCNNNNNNNGC	5 cut(s)	11, 44, 65, 737, 1039
NarI	GGCGCC	1 cut(s)	411
NciI	CCSGG	1 cut(s)	786
NcoI	CCATGG	1 cut(s)	1620
NdeI	CATATG	1 cut(s)	289
NheI	GCTAGC	3 cut(s)	22, 860, 1009
NlaIV	GGNNCC	7 cut(s)	392, 412, 919, 1021, 1022, 1032, 1038
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	3 cut(s)	760, 1066, 1105
NsbI	TGCGCA	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	6 cut(s)	30, 377, 383, 658, 1063, 1113
PaeI	GCATGC	1 cut(s)	377
PauI	GCGCGC	1 cut(s)	5
PciI	ACATGT	3 cut(s)	379, 1059, 1109
PctI	GAATGC	2 cut(s)	79, 505
PfeI	GAWTC	5 cut(s)	336, 523, 557, 1081, 1393
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	7 cut(s)	67, 114, 660, 676, 847, 1170, 1365
PleI	GAGTC	2 cut(s)	908, 1165
PluTI	GGCGCC	1 cut(s)	414
PpsI	GAGTC	2 cut(s)	908, 1165
Ppu21I	YACGTR	1 cut(s)	1429
PscI	ACATGT	3 cut(s)	379, 1059, 1109
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	5 cut(s)	157, 313, 465, 586, 1564
PspGI	CCWGG	5 cut(s)	157, 313, 465, 586, 1564
PspN4I	GGNNCC	7 cut(s)	392, 412, 919, 1021, 1022, 1032, 1038
PspOMI	GGGCCC	1 cut(s)	1019
PspPI	GGNCC	7 cut(s)	161, 281, 979, 1019, 1020, 1118, 1643
PstI	CTGCAG	1 cut(s)	1368
PsuI	RGATCY	4 cut(s)	249, 431, 830, 1294
PteI	GCGCGC	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	1168
RsaI	GTAC	3 cut(s)	361, 474, 1340
RsaNI	GTAC	3 cut(s)	360, 473, 1339
RseI	CAYNNNNRTG	4 cut(s)	243, 378, 1064, 1410
SalI	GTCGAC	1 cut(s)	734
SaqAI	TTAA	5 cut(s)	144, 1125, 1464, 1491, 1696
SatI	GCNGC	7 cut(s)	66, 113, 659, 675, 846, 1169, 1364
Sau96I	GGNCC	7 cut(s)	161, 281, 979, 1019, 1020, 1118, 1643
SchI	GAGTC	2 cut(s)	909, 1166
ScrFI	CCNGG	6 cut(s)	159, 315, 467, 588, 786, 1566
SduI	GDGCHC	6 cut(s)	34, 305, 550, 1023, 1059, 1602
SfaNI	GCATC	3 cut(s)	553, 1205, 1664
SfcI	CTRYAG	3 cut(s)	331, 1350, 1364
SfoI	GGCGCC	1 cut(s)	412
SgrDI	CGTCGACG	1 cut(s)	734
SinI	GGWCC	4 cut(s)	161, 281, 1118, 1643
SmiMI	CAYNNNNRTG	4 cut(s)	243, 378, 1064, 1410
SmlI	CTYRAG	3 cut(s)	865, 1043, 1437
SmoI	CTYRAG	3 cut(s)	865, 1043, 1437
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	6 cut(s)	601, 986, 1450, 1478, 1500, 1512
SspDI	GGCGCC	1 cut(s)	410
SspMI	CTAG	6 cut(s)	23, 35, 504, 861, 1010, 1292
StyD4I	CCNGG	6 cut(s)	157, 313, 465, 586, 784, 1564
StyI	CCWWGG	1 cut(s)	1620
TaaI	ACNGT	6 cut(s)	106, 403, 724, 1182, 1351, 1651
TaiI	ACGT	7 cut(s)	207, 474, 519, 762, 1212, 1431, 1599
TaqI	TCGA	7 cut(s)	75, 439, 735, 929, 1254, 1389, 1680
TasI	AATT	6 cut(s)	601, 986, 1450, 1478, 1500, 1512
TatI	WGTACW	1 cut(s)	1338
TauI	GCSGC	2 cut(s)	115, 848
TfiI	GAWTC	5 cut(s)	336, 523, 557, 1081, 1393
Tru1I	TTAA	5 cut(s)	144, 1125, 1464, 1491, 1696
Tru9I	TTAA	5 cut(s)	144, 1125, 1464, 1491, 1696
TscAI	CASTG	3 cut(s)	305, 1031, 1185
TseFI	GTSAC	3 cut(s)	760, 1066, 1105
TseI	GCWGC	5 cut(s)	65, 658, 674, 1168, 1363
Tsp45I	GTSAC	3 cut(s)	760, 1066, 1105
TspDTI	ATGAA	6 cut(s)	77, 227, 375, 1163, 1394, 1400
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	305, 1031, 1185
VneI	GTGCAC	1 cut(s)	1598
VpaK11BI	GGWCC	4 cut(s)	161, 281, 1118, 1643
XagI	CCTNNNNNAGG	1 cut(s)	1527
XapI	RAATTY	3 cut(s)	986, 1478, 1500
XceI	RCATGY	6 cut(s)	30, 377, 383, 658, 1063, 1113
XmiI	GTMKAC	2 cut(s)	735, 909
XspI	CTAG	6 cut(s)	23, 35, 504, 861, 1010, 1292
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.