Rh7DG144700

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000056
Physical Location & Seq
Forward (+)
12333593 .. 12334611
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG144700.1

Sequence Viewer

Length: 795 bp
ATGAGTCCTTCCAGCATCCCGGAGGAGAGACATTACTTTAGTTTTAAAAAGTCGCAAACAGAAGCAAGAAGACCCCCGAGCACGATAATCCCACCGGAAACGCATCCAATGAAATTAATATTCATGAGGGCAACCGAGATCCATCGTATTGATGATCCAAGCGACATTACTTATGGTGGACCTGTAATCGTATCTGAAGCAAAACTTAATGTCCGTCGCAACTGGATTGGATACGCTATACATATGCTTAAGGCTCTTTCGGCCATGTTGGTCCCAGAAGATGAGCACCGGGTTCTAATTCAGAGAATGTATAAAGAATGTGTACCCCTGTGGGTGACAAACATCCCTATTACTGTGGTCATAGCCGACGTGACTGTGAGCTTCTCTAGCGACTTTAGGAGTACTACTACTTTTGCGAGCCTTGATATTGTCTTTGATAGGACAAGGGATTTGAGGGAATTAGAAGAATCCATGGAAAGATATGAGCCCAAGTTTATTCCTGCAACCAAGTCGTCCATTGAGGCTTTGGAGAAGGTCACACTCGATAGTTTGGATGAAGCGGCTGCTAGTTTTACATGTGGTATTTGTCAGGAGGGTCTTGATCAGTTGAAGGCTGTCGAAGAAGAAGAAGATCATGGGGATATTAAGCCAAGGACGACGATTACTCGCTTGCCCTGCTTACATATCTATCATGATACTTGCATTGTCCAGTGGCTGAAGATCAGCCACTTGTGTCCCTTATGCCGACACGCACTGCCAACTGTGGAAGTCGGAGAGCAAAGAAACCCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

264

Amino Acids

30.1

Weight (kDa)

5.6

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 192 - 249 1e-09 RING-H2 zinc finger domain
zf-C3HC4 PF00097 193 - 248 8.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 216 - 249 4.1e-09 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 560
AclWI GGATC 2 cut(s) 133, 149
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 216, 737
AfaI GTAC 2 cut(s) 324, 403
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 575
AgsI TTSAA 1 cut(s) 610
AjiI CACGTC 1 cut(s) 370
AluBI AGCT 2 cut(s) 381, 791
AluI AGCT 2 cut(s) 381, 791
Alw21I GWGCWC 2 cut(s) 83, 288
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 2 cut(s) 133, 149
AlwNI CAGNNNCTG 1 cut(s) 715
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 563
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
AseI ATTAAT 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 179, 271
AsuC2I CCSGG 2 cut(s) 20, 290
AsuHPI GGTGA 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 2 cut(s) 179, 271
BanII GRGCYC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 83, 288
BbvI GCAGC 1 cut(s) 550
BccI CCATC 1 cut(s) 150
BcgI CGANNNNNNTGC 2 cut(s) 492, 526
BciVI GTATCC 1 cut(s) 224
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 2 cut(s) 20, 290
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 2 cut(s) 387, 567
BfrI CTTAAG 1 cut(s) 248
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 2 cut(s) 561, 564
BlsI GCNGC 2 cut(s) 562, 565
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 20, 290
Bme18I GGWCC 2 cut(s) 179, 271
BmeT110I CYCGRG 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 179, 271
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 20, 290
BmsI GCATC 2 cut(s) 24, 112
BpiI GAAGAC 1 cut(s) 76
BpuMI CCSGG 2 cut(s) 20, 290
BsaJI CCNNGG 2 cut(s) 471, 650
BsaWI WCCGGW 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 227, 709
BseDI CCNNGG 2 cut(s) 471, 650
BseGI GGATG 4 cut(s) 15, 103, 342, 559
BseNI ACTGG 2 cut(s) 227, 709
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 550
BseYI CCCAGC 1 cut(s) 787
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 83, 288
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 3 cut(s) 20, 95, 289
BslFI GGGAC 2 cut(s) 257, 720
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 2 cut(s) 257, 720
BsnI GGCC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 3 cut(s) 83, 288, 489
Bsp143I GATC 5 cut(s) 138, 154, 601, 631, 720
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 1 cut(s) 560
BspANI GGCC 1 cut(s) 263
BspHI TCATGA 2 cut(s) 123, 691
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 133, 149
BspTI CTTAAG 1 cut(s) 248
BsrI ACTGG 2 cut(s) 227, 709
BssECI CCNNGG 2 cut(s) 471, 650
BssMI GATC 5 cut(s) 138, 154, 601, 631, 720
BssT1I CCWWGG 2 cut(s) 471, 650
Bst4CI ACNGT 3 cut(s) 355, 376, 763
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 418, 671
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 4 cut(s) 15, 103, 342, 559
BstKTI GATC 5 cut(s) 141, 157, 604, 634, 723
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 5 cut(s) 138, 154, 601, 631, 720
BstMWI GCNNNNNNNGC 3 cut(s) 260, 387, 675
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 18, 288
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 4 cut(s) 15, 103, 342, 559
BtsI GCAGTG 1 cut(s) 752
BtsIMutI CAGTG 2 cut(s) 716, 752
Cac8I GCNNGC 2 cut(s) 418, 671
CaiI CAGNNNCTG 1 cut(s) 715
CciI TCATGA 2 cut(s) 123, 691
Cfr13I GGNCC 2 cut(s) 179, 271
Csp6I GTAC 2 cut(s) 323, 402
CviAII CATG 6 cut(s) 124, 265, 472, 576, 635, 692
CviQI GTAC 2 cut(s) 323, 402
DpnI GATC 5 cut(s) 140, 156, 603, 633, 722
DpnII GATC 5 cut(s) 138, 154, 601, 631, 720
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 261
Eco130I CCWWGG 2 cut(s) 471, 650
Eco24I GRGCYC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 179, 271
Eco57I CTGAAG 2 cut(s) 216, 737
Eco88I CYCGRG 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 471, 650
EcoT38I GRGCYC 1 cut(s) 489
ErhI CCWWGG 2 cut(s) 471, 650
FaeI CATG 6 cut(s) 127, 268, 475, 579, 638, 695
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 2 cut(s) 257, 720
FatI CATG 6 cut(s) 123, 264, 471, 575, 634, 691
FauNDI CATATG 1 cut(s) 243
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 2 cut(s) 561, 564
FokI GGATG 4 cut(s) 2, 90, 329, 566
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 2 cut(s) 561, 564
FspBI CTAG 2 cut(s) 387, 567
GluI GCNGC 2 cut(s) 561, 564
GsaI CCCAGC 1 cut(s) 791
HaeIII GGCC 1 cut(s) 263
HapII CCGG 3 cut(s) 20, 95, 289
Hin1II CATG 6 cut(s) 127, 268, 475, 579, 638, 695
HinfI GANTC 2 cut(s) 4, 467
HpaII CCGG 3 cut(s) 20, 95, 289
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 179, 323
Hpy188I TCNGA 3 cut(s) 196, 303, 773
Hpy188III TCNNGA 4 cut(s) 124, 590, 599, 692
Hpy8I GTNNAC 2 cut(s) 179, 323
Hpy99I CGWCG 3 cut(s) 219, 371, 661
HpyAV CCTTC 3 cut(s) 18, 526, 604
HpyCH4III ACNGT 3 cut(s) 355, 376, 763
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 2 cut(s) 503, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 387, 675
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 6 cut(s) 127, 268, 475, 579, 638, 695
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 5 cut(s) 138, 154, 601, 631, 720
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 2 cut(s) 24, 112
MaeI CTAG 2 cut(s) 387, 567
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 3 cut(s) 334, 370, 535
MalI GATC 5 cut(s) 140, 156, 603, 633, 722
MboI GATC 5 cut(s) 138, 154, 601, 631, 720
MboII GAAGA 8 cut(s) 81, 290, 476, 632, 635, 638, 641, 730
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 3 cut(s) 83, 288, 489
MluCI AATT 3 cut(s) 113, 297, 458
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 751
MnlI CCTC 5 cut(s) 16, 120, 447, 514, 586
MseI TTAA 6 cut(s) 45, 116, 207, 249, 645, 793
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 3 cut(s) 20, 95, 289
MspR9I CCNGG 2 cut(s) 20, 290
MwoI GCNNNNNNNGC 3 cut(s) 260, 387, 675
NciI CCSGG 2 cut(s) 20, 290
NcoI CCATGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 243
NdeII GATC 5 cut(s) 138, 154, 601, 631, 720
NlaIII CATG 6 cut(s) 127, 268, 475, 579, 638, 695
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 3 cut(s) 334, 370, 535
NspI RCATGY 1 cut(s) 579
PagI TCATGA 2 cut(s) 123, 691
PciI ACATGT 1 cut(s) 575
PfeI GAWTC 1 cut(s) 467
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 2 cut(s) 562, 565
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PscI ACATGT 1 cut(s) 575
PshBI ATTAAT 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 787
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 2 cut(s) 179, 271
PstNI CAGNNNCTG 1 cut(s) 715
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 2 cut(s) 324, 403
RsaNI GTAC 2 cut(s) 323, 402
SaqAI TTAA 6 cut(s) 45, 116, 207, 249, 645, 793
SatI GCNGC 2 cut(s) 561, 564
Sau3AI GATC 5 cut(s) 138, 154, 601, 631, 720
Sau96I GGNCC 2 cut(s) 179, 271
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 20, 290
SduI GDGCHC 3 cut(s) 83, 288, 489
SetI ASST 5 cut(s) 184, 372, 383, 537, 793
SfaNI GCATC 2 cut(s) 24, 112
SinI GGWCC 2 cut(s) 179, 271
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 3 cut(s) 113, 297, 458
SsiI CCGC 1 cut(s) 560
SspI AATATT 1 cut(s) 120
SspMI CTAG 2 cut(s) 387, 567
StyD4I CCNGG 2 cut(s) 18, 288
StyI CCWWGG 2 cut(s) 471, 650
TaaI ACNGT 3 cut(s) 355, 376, 763
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 543, 618
TasI AATT 3 cut(s) 113, 297, 458
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 6 cut(s) 45, 116, 207, 249, 645, 793
Tru9I TTAA 6 cut(s) 45, 116, 207, 249, 645, 793
TscAI CASTG 2 cut(s) 716, 759
TseFI GTSAC 3 cut(s) 334, 370, 535
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 3 cut(s) 334, 370, 535
TspDTI ATGAA 3 cut(s) 112, 125, 570
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 716, 759
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 179, 271
VspI ATTAAT 1 cut(s) 116
XceI RCATGY 1 cut(s) 579
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XspI CTAG 2 cut(s) 387, 567
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.