Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003314.1

Orthogroup ID

OG0000056

Physical Location & Seq

Genomic Coordinates Forward (+)

63222 .. 64665

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003314.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgtacataaatcccttgaccccctttcttctcttcttctccctccgacgccaccaacagtcttctctcttctctctttgcgaatatcgcagttcttcagatatggctactgagagacattattttcggagcgtggtgaaaagcgaatttatagatgaggccagagttcctgacattccaagatgcatggacacacggatccaattctgtctctacaaggtcaccagaaactgctgggttgaggttccatcaaagattgttgatggtccacaaaagctcataaccgaggcacatgcttttgtccttctctccgatgtcaagcaattgtctaaaaggagtaagtatacgcgggtcatggctaagaaactttccaggatgtatgtacctgaagatgagcacgcagctattattgaaaaactatttcgagtaattgaagtggccgtcccggggattcctatttttgtgtgtgtctgggatgtgacgctccgcctcttggacagtgcagctagtgttggcccgcaggctctgactcgatcctttgtggcccctggattaagatttgatctggaggatggaggaatgatcgttagacagatgccatgtgctatttgtatggagggccttgatcactttgccgtagaaggagggactgatcagcagctcatgcttgcttgccctgctcgcatctttttcatggagattgtgttgtccagtggcttgagtcgaatcacttgtgtcccttgtgccggtacccaatgccgactgtggaagtggaaatggaggcaggcgaaccatcagaaccctcaaggtcgctgcattgcaatatgctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

277

Amino Acids

31.59

Weight (kDa)

8.79

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74620
fragaria_vesca	FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica	MD14G1195700.v1.1
prunus_persica	Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis	pycom17g01390
rosa_chinensis	RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata	RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora	Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii	Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa	Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha	Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana	Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	749
AccB1I	GGYRCC	1 cut(s)	749
AccI	GTMKAC	1 cut(s)	344
AccII	CGCG	1 cut(s)	349
AciI	CCGC	3 cut(s)	349, 487, 518
AclWI	GGATC	3 cut(s)	193, 206, 528
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	81, 408
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	3 cut(s)	5, 384, 751
AfiI	CCNNNNNNNGG	3 cut(s)	447, 493, 746
AgsI	TTSAA	2 cut(s)	413, 434
AjnI	CCWGG	2 cut(s)	371, 547
AluBI	AGCT	4 cut(s)	277, 404, 506, 661
AluI	AGCT	4 cut(s)	277, 404, 506, 661
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	109, 215
AlwI	GGATC	3 cut(s)	193, 206, 528
AlwNI	CAGNNNCTG	2 cut(s)	231, 526
Ama87I	CYCGRG	1 cut(s)	445
AoxI	GGCC	5 cut(s)	159, 438, 514, 543, 619
ApeKI	GCWGC	4 cut(s)	401, 503, 658, 813
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp718I	GGTACC	1 cut(s)	749
AspS9I	GGNCC	4 cut(s)	266, 515, 544, 619
AsuC2I	CCSGG	2 cut(s)	446, 447
AsuHPI	GGTGA	2 cut(s)	148, 214
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	413, 515, 670, 800
BccI	CCATC	4 cut(s)	256, 257, 566, 801
BceAI	ACGGC	2 cut(s)	425, 620
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	373, 549
BclI	TGATCA	2 cut(s)	625, 652
BcnI	CCSGG	2 cut(s)	446, 447
BcoDI	GTCTC	2 cut(s)	109, 215
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	4 cut(s)	402, 504, 659, 814
BlsI	GCNGC	4 cut(s)	403, 505, 660, 815
Bme1390I	CCNGG	4 cut(s)	373, 446, 447, 549
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	4 cut(s)	266, 515, 544, 619
BmiI	GGNNCC	4 cut(s)	200, 246, 546, 751
BmrFI	CCNGG	4 cut(s)	373, 446, 447, 549
BmsI	GCATC	3 cut(s)	173, 585, 693
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	587
BpuEI	CTTGAG	2 cut(s)	739, 789
BpuMI	CCSGG	2 cut(s)	446, 447
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	285, 445, 446, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	3 cut(s)	447, 493, 746
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	373, 549
BseDI	CCNNGG	4 cut(s)	285, 445, 446, 547
BseGI	GGATG	3 cut(s)	381, 481, 577
BseLI	CCNNNNNNNGG	3 cut(s)	447, 493, 746
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	711
BseXI	GCAGC	4 cut(s)	413, 515, 670, 800
BseYI	CCCAGC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	5 cut(s)	161, 440, 516, 545, 621
BshNI	GGYRCC	1 cut(s)	749
BsiHKAI	GWGCWC	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	446, 747
BslFI	GGGAC	3 cut(s)	428, 661, 722
BslI	CCNNNNNNNGG	3 cut(s)	447, 493, 746
BsmAI	GTCTC	2 cut(s)	109, 215
BsmFI	GGGAC	3 cut(s)	428, 661, 722
BsnI	GGCC	5 cut(s)	161, 440, 516, 545, 621
BsoBI	CYCGRG	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
BspACI	CCGC	3 cut(s)	349, 487, 518
BspANI	GGCC	5 cut(s)	161, 440, 516, 545, 621
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	830
BspLI	GGNNCC	4 cut(s)	200, 246, 546, 751
BspPI	GGATC	3 cut(s)	193, 206, 528
BspT107I	GGYRCC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	746
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	711
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	4 cut(s)	285, 445, 446, 547
BssMI	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
BssNAI	GTATAC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	373, 549
Bst4CI	ACNGT	3 cut(s)	60, 500, 765
Bst6I	CTCTTC	2 cut(s)	38, 74
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	7 cut(s)	399, 518, 522, 669, 673, 682, 786
BstDEI	CTNAG	2 cut(s)	111, 360
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	381, 481, 577
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	6 cut(s)	201, 536, 565, 585, 628, 655
BstMAI	GTCTC	2 cut(s)	109, 215
BstMBI	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 664, 677, 681
BstNI	CCWGG	2 cut(s)	373, 549
BstNSI	RCATGY	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	371, 444, 445, 547
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	4 cut(s)	413, 515, 670, 800
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BstZ17I	GTATAC	1 cut(s)	345
BsuRI	GGCC	5 cut(s)	161, 440, 516, 545, 621
BtsCI	GGATG	3 cut(s)	381, 481, 577
BtsIMutI	CAGTG	2 cut(s)	505, 718
Cac8I	GCNNGC	7 cut(s)	399, 518, 522, 669, 673, 682, 786
CaiI	CAGNNNCTG	2 cut(s)	231, 526
CciI	TCATGA	1 cut(s)	830
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	4 cut(s)	266, 515, 544, 619
Cfr9I	CCCGGG	1 cut(s)	445
CseI	GACGC	2 cut(s)	57, 490
Csp6I	GTAC	3 cut(s)	4, 383, 750
CviAII	CATG	7 cut(s)	187, 293, 355, 600, 664, 694, 831
CviQI	GTAC	3 cut(s)	4, 383, 750
DdeI	CTNAG	2 cut(s)	111, 360
DpnI	GATC	6 cut(s)	200, 535, 564, 584, 627, 654
DpnII	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	38, 74
EarI	CTCTTC	2 cut(s)	38, 74
EciI	GGCGGA	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	81, 408
Eco88I	CYCGRG	1 cut(s)	445
Eco91I	GGTNACC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	371, 547
EcoT22I	ATGCAT	1 cut(s)	188
FaeI	CATG	7 cut(s)	190, 296, 358, 603, 667, 697, 834
FaqI	GGGAC	3 cut(s)	428, 661, 722
FatI	CATG	7 cut(s)	186, 292, 354, 599, 663, 693, 830
FauI	CCCGC	2 cut(s)	342, 525
FbaI	TGATCA	2 cut(s)	625, 652
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	402, 504, 659, 814
FokI	GGATG	3 cut(s)	388, 488, 584
Fsp4HI	GCNGC	4 cut(s)	402, 504, 659, 814
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	4 cut(s)	402, 504, 659, 814
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	5 cut(s)	161, 440, 516, 545, 621
HapII	CCGG	2 cut(s)	446, 747
HgaI	GACGC	2 cut(s)	57, 490
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	7 cut(s)	190, 296, 358, 603, 667, 697, 834
HinfI	GANTC	4 cut(s)	451, 529, 721, 726
HpaII	CCGG	2 cut(s)	446, 747
HphI	GGTGA	2 cut(s)	148, 214
Hpy166II	GTNNAC	2 cut(s)	269, 345
Hpy188I	TCNGA	6 cut(s)	47, 100, 129, 313, 528, 798
Hpy188III	TCNNGA	3 cut(s)	170, 566, 831
Hpy8I	GTNNAC	2 cut(s)	269, 345
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	314, 635
HpyCH4III	ACNGT	3 cut(s)	60, 500, 765
HpyCH4V	TGCA	4 cut(s)	186, 503, 816, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 664, 677, 681
HpyF3I	CTNAG	2 cut(s)	111, 360
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	7 cut(s)	190, 296, 358, 603, 667, 697, 834
KpnI	GGTACC	1 cut(s)	753
Ksp22I	TGATCA	2 cut(s)	625, 652
Kzo9I	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
LmnI	GCTCC	2 cut(s)	129, 489
Lsp1109I	GCAGC	4 cut(s)	413, 515, 670, 800
LweI	GCATC	3 cut(s)	173, 585, 693
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	220, 478
MalI	GATC	6 cut(s)	200, 535, 564, 584, 627, 654
MboI	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
MboII	GAAGA	7 cut(s)	20, 25, 28, 54, 61, 87, 401
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	4 cut(s)	146, 203, 323, 429
MlyI	GAGTC	2 cut(s)	523, 730
MmeI	TCCRAC	1 cut(s)	70
Mph1103I	ATGCAT	1 cut(s)	188
MseI	TTAA	1 cut(s)	554
MspI	CCGG	2 cut(s)	446, 747
MspR9I	CCNGG	4 cut(s)	373, 446, 447, 549
MunI	CAATTG	1 cut(s)	323
MvaI	CCWGG	2 cut(s)	373, 549
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	4 cut(s)	87, 664, 677, 681
NciI	CCSGG	2 cut(s)	446, 447
NdeII	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
NlaIII	CATG	7 cut(s)	190, 296, 358, 603, 667, 697, 834
NlaIV	GGNNCC	4 cut(s)	200, 246, 546, 751
NmuCI	GTSAC	2 cut(s)	220, 478
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	1 cut(s)	296
PagI	TCATGA	1 cut(s)	830
PfeI	GAWTC	2 cut(s)	451, 726
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	403, 505, 660, 815
PleI	GAGTC	2 cut(s)	523, 729
PpsI	GAGTC	2 cut(s)	523, 729
Psp6I	CCWGG	2 cut(s)	371, 547
PspEI	GGTNACC	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	371, 547
PspN4I	GGNNCC	4 cut(s)	200, 246, 546, 751
PspPI	GGNCC	4 cut(s)	266, 515, 544, 619
PstNI	CAGNNNCTG	2 cut(s)	231, 526
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	3 cut(s)	5, 384, 751
RsaNI	GTAC	3 cut(s)	4, 383, 750
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	4 cut(s)	402, 504, 659, 814
Sau3AI	GATC	6 cut(s)	198, 533, 562, 582, 625, 652
Sau96I	GGNCC	4 cut(s)	266, 515, 544, 619
SchI	GAGTC	2 cut(s)	523, 730
ScrFI	CCNGG	4 cut(s)	373, 446, 447, 549
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	8 cut(s)	222, 246, 279, 388, 406, 508, 663, 811
SfaNI	GCATC	3 cut(s)	173, 585, 693
SinI	GGWCC	1 cut(s)	266
SmaI	CCCGGG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	718, 804
SmoI	CTYRAG	2 cut(s)	718, 804
Sse9I	AATT	4 cut(s)	146, 203, 323, 429
SsiI	CCGC	3 cut(s)	349, 487, 518
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	4 cut(s)	371, 444, 445, 547
TaaI	ACNGT	3 cut(s)	60, 500, 765
TaqI	TCGA	3 cut(s)	424, 532, 724
TasI	AATT	4 cut(s)	146, 203, 323, 429
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	451, 726
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TscAI	CASTG	2 cut(s)	505, 718
TseFI	GTSAC	2 cut(s)	220, 478
TseI	GCWGC	4 cut(s)	401, 503, 658, 813
Tsp45I	GTSAC	2 cut(s)	220, 478
TspDTI	ATGAA	1 cut(s)	682
TspGWI	ACGGA	1 cut(s)	211
TspMI	CCCGGG	1 cut(s)	445
TspRI	CASTG	2 cut(s)	505, 718
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	296
XmaI	CCCGGG	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	1 cut(s)	507
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.