E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RING_2 | PF13639 | 163 - 204 | 3e-12 | Ring finger domain |
| zf-RING_11 | PF17123 | 164 - 190 | 1.2e-07 | RING-like zinc finger |
| zf-C3HC4_2 | PF13923 | 164 - 203 | 2.8e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-rbx1 | PF12678 | 164 - 204 | 3.1e-06 | RING-H2 zinc finger domain |
| zf-C3HC4 | PF00097 | 164 - 203 | 1.2e-06 | Zinc finger, C3HC4 type (RING finger) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 16, 216, 326 |
| AclWI | GGATC | 3 cut(s) | 122, 135, 427 |
| AcuI | CTGAAG | 1 cut(s) | 278 |
| AfaI | GTAC | 2 cut(s) | 393, 578 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 442 |
| AflIII | ACRYGT | 1 cut(s) | 594 |
| AgsI | TTSAA | 2 cut(s) | 193, 515 |
| AjnI | CCWGG | 1 cut(s) | 27 |
| AleI | CACNNNNGTG | 1 cut(s) | 338 |
| AluBI | AGCT | 3 cut(s) | 55, 82, 100 |
| AluI | AGCT | 3 cut(s) | 55, 82, 100 |
| Alw26I | GTCTC | 1 cut(s) | 461 |
| AlwI | GGATC | 3 cut(s) | 122, 135, 427 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 34 |
| ApeKI | GCWGC | 2 cut(s) | 34, 196 |
| AspLEI | GCGC | 1 cut(s) | 34 |
| AsuC2I | CCSGG | 1 cut(s) | 437 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 325, 598 |
| BaeGI | GKGCMC | 1 cut(s) | 276 |
| BamHI | GGATCC | 1 cut(s) | 127 |
| BanII | GRGCYC | 1 cut(s) | 442 |
| BbvI | GCAGC | 2 cut(s) | 21, 208 |
| BciT130I | CCWGG | 1 cut(s) | 29 |
| BcnI | CCSGG | 1 cut(s) | 437 |
| BcoDI | GTCTC | 1 cut(s) | 461 |
| BfoI | RGCGCY | 1 cut(s) | 35 |
| BisI | GCNGC | 4 cut(s) | 35, 197, 217, 327 |
| BlsI | GCNGC | 4 cut(s) | 36, 198, 218, 328 |
| BmcAI | AGTACT | 1 cut(s) | 578 |
| Bme1390I | CCNGG | 2 cut(s) | 29, 437 |
| BmiI | GGNNCC | 1 cut(s) | 129 |
| BmrFI | CCNGG | 2 cut(s) | 29, 437 |
| BmsI | GCATC | 1 cut(s) | 262 |
| BpmI | CTGGAG | 1 cut(s) | 464 |
| BpuMI | CCSGG | 1 cut(s) | 437 |
| Bsa29I | ATCGAT | 1 cut(s) | 431 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 442 |
| Bse3DI | GCAATG | 1 cut(s) | 562 |
| BseBI | CCWGG | 1 cut(s) | 29 |
| BseCI | ATCGAT | 1 cut(s) | 431 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BseMI | GCAATG | 1 cut(s) | 562 |
| BseRI | GAGGAG | 1 cut(s) | 86 |
| BseSI | GKGCMC | 1 cut(s) | 276 |
| BseXI | GCAGC | 2 cut(s) | 21, 208 |
| BshVI | ATCGAT | 1 cut(s) | 431 |
| BsiSI | CCGG | 1 cut(s) | 436 |
| BslFI | GGGAC | 2 cut(s) | 380, 585 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BsmAI | GTCTC | 1 cut(s) | 461 |
| BsmFI | GGGAC | 2 cut(s) | 380, 585 |
| Bsp1286I | GDGCHC | 2 cut(s) | 276, 442 |
| Bsp143I | GATC | 3 cut(s) | 127, 425, 432 |
| BspACI | CCGC | 3 cut(s) | 16, 216, 326 |
| BspDI | ATCGAT | 1 cut(s) | 431 |
| BspLI | GGNNCC | 1 cut(s) | 129 |
| BspPI | GGATC | 3 cut(s) | 122, 135, 427 |
| BsrDI | GCAATG | 1 cut(s) | 562 |
| BssMI | GATC | 3 cut(s) | 127, 425, 432 |
| Bst2UI | CCWGG | 1 cut(s) | 29 |
| Bst4CI | ACNGT | 1 cut(s) | 175 |
| Bst6I | CTCTTC | 1 cut(s) | 254 |
| BstC8I | GCNNGC | 3 cut(s) | 421, 478, 482 |
| BstH2I | RGCGCY | 1 cut(s) | 35 |
| BstHHI | GCGC | 1 cut(s) | 34 |
| BstKTI | GATC | 3 cut(s) | 130, 428, 435 |
| BstMAI | GTCTC | 1 cut(s) | 461 |
| BstMBI | GATC | 3 cut(s) | 127, 425, 432 |
| BstNI | CCWGG | 1 cut(s) | 29 |
| BstNSI | RCATGY | 2 cut(s) | 480, 598 |
| BstSCI | CCNGG | 2 cut(s) | 27, 435 |
| BstSLI | GKGCMC | 1 cut(s) | 276 |
| BstV1I | GCAGC | 2 cut(s) | 21, 208 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| Bsu15I | ATCGAT | 1 cut(s) | 431 |
| BsuTUI | ATCGAT | 1 cut(s) | 431 |
| BtsI | GCAGTG | 1 cut(s) | 226 |
| BtsIMutI | CAGTG | 1 cut(s) | 226 |
| Cac8I | GCNNGC | 3 cut(s) | 421, 478, 482 |
| CaiI | CAGNNNCTG | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 34 |
| ClaI | ATCGAT | 1 cut(s) | 431 |
| CseI | GACGC | 1 cut(s) | 353 |
| Csp6I | GTAC | 2 cut(s) | 392, 577 |
| CviAII | CATG | 4 cut(s) | 281, 477, 489, 595 |
| CviJI | RGCY | 7 cut(s) | 55, 63, 82, 100, 158, 329, 440 |
| CviKI_1 | RGCY | 7 cut(s) | 55, 63, 82, 100, 158, 329, 440 |
| CviQI | GTAC | 2 cut(s) | 392, 577 |
| DpnI | GATC | 3 cut(s) | 129, 427, 434 |
| DpnII | GATC | 3 cut(s) | 127, 425, 432 |
| Eam1104I | CTCTTC | 1 cut(s) | 254 |
| EarI | CTCTTC | 1 cut(s) | 254 |
| Eco24I | GRGCYC | 1 cut(s) | 442 |
| Eco57I | CTGAAG | 1 cut(s) | 278 |
| EcoRII | CCWGG | 1 cut(s) | 27 |
| EcoT38I | GRGCYC | 1 cut(s) | 442 |
| FaeI | CATG | 4 cut(s) | 284, 480, 492, 598 |
| FaqI | GGGAC | 2 cut(s) | 380, 585 |
| FatI | CATG | 4 cut(s) | 280, 476, 488, 594 |
| Fnu4HI | GCNGC | 4 cut(s) | 35, 197, 217, 327 |
| FriOI | GRGCYC | 1 cut(s) | 442 |
| Fsp4HI | GCNGC | 4 cut(s) | 35, 197, 217, 327 |
| GlaI | GCGC | 1 cut(s) | 33 |
| GluI | GCNGC | 4 cut(s) | 35, 197, 217, 327 |
| GsuI | CTGGAG | 1 cut(s) | 464 |
| HaeII | RGCGCY | 1 cut(s) | 35 |
| HapII | CCGG | 1 cut(s) | 436 |
| HgaI | GACGC | 1 cut(s) | 353 |
| HhaI | GCGC | 1 cut(s) | 34 |
| Hin1II | CATG | 4 cut(s) | 284, 480, 492, 598 |
| Hin6I | GCGC | 1 cut(s) | 32 |
| HinP1I | GCGC | 1 cut(s) | 32 |
| HincII | GTYRAC | 1 cut(s) | 111 |
| HindII | GTYRAC | 1 cut(s) | 111 |
| HindIII | AAGCTT | 2 cut(s) | 80, 98 |
| HinfI | GANTC | 1 cut(s) | 93 |
| HpaII | CCGG | 1 cut(s) | 436 |
| HphI | GGTGA | 3 cut(s) | 17, 325, 598 |
| Hpy166II | GTNNAC | 4 cut(s) | 25, 111, 343, 589 |
| Hpy188I | TCNGA | 3 cut(s) | 92, 250, 258 |
| Hpy188III | TCNNGA | 1 cut(s) | 443 |
| Hpy8I | GTNNAC | 4 cut(s) | 25, 111, 343, 589 |
| Hpy99I | CGWCG | 1 cut(s) | 628 |
| HpyCH4III | ACNGT | 1 cut(s) | 175 |
| HpyCH4IV | ACGT | 1 cut(s) | 21 |
| HpyCH4V | TGCA | 3 cut(s) | 37, 480, 567 |
| HpySE526I | ACGT | 1 cut(s) | 21 |
| Hsp92II | CATG | 4 cut(s) | 284, 480, 492, 598 |
| HspAI | GCGC | 1 cut(s) | 32 |
| Kzo9I | GATC | 3 cut(s) | 127, 425, 432 |
| LmnI | GCTCC | 1 cut(s) | 445 |
| Lsp1109I | GCAGC | 2 cut(s) | 21, 208 |
| LweI | GCATC | 1 cut(s) | 262 |
| MaeII | ACGT | 1 cut(s) | 21 |
| MaeIII | GTNAC | 3 cut(s) | 331, 451, 526 |
| MalI | GATC | 3 cut(s) | 129, 427, 434 |
| MboI | GATC | 3 cut(s) | 127, 425, 432 |
| MboII | GAAGA | 1 cut(s) | 271 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MhlI | GDGCHC | 2 cut(s) | 276, 442 |
| MluCI | AATT | 1 cut(s) | 200 |
| MmeI | TCCRAC | 1 cut(s) | 231 |
| MnlI | CCTC | 9 cut(s) | 36, 64, 67, 316, 393, 496, 499, 577, 614 |
| MseI | TTAA | 1 cut(s) | 634 |
| MslI | CAYNNNNRTG | 1 cut(s) | 338 |
| MspI | CCGG | 1 cut(s) | 436 |
| MspR9I | CCNGG | 2 cut(s) | 29, 437 |
| MvaI | CCWGG | 1 cut(s) | 29 |
| NciI | CCSGG | 1 cut(s) | 437 |
| NdeII | GATC | 3 cut(s) | 127, 425, 432 |
| NlaIII | CATG | 4 cut(s) | 284, 480, 492, 598 |
| NlaIV | GGNNCC | 1 cut(s) | 129 |
| NmuCI | GTSAC | 2 cut(s) | 331, 451 |
| NspI | RCATGY | 2 cut(s) | 480, 598 |
| OliI | CACNNNNGTG | 1 cut(s) | 338 |
| PaeI | GCATGC | 1 cut(s) | 480 |
| PciI | ACATGT | 1 cut(s) | 594 |
| PfeI | GAWTC | 1 cut(s) | 93 |
| PkrI | GCNGC | 4 cut(s) | 36, 198, 218, 328 |
| PscI | ACATGT | 1 cut(s) | 594 |
| Psp6I | CCWGG | 1 cut(s) | 27 |
| PspGI | CCWGG | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 1 cut(s) | 129 |
| PstNI | CAGNNNCTG | 1 cut(s) | 34 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RsaI | GTAC | 2 cut(s) | 393, 578 |
| RsaNI | GTAC | 2 cut(s) | 392, 577 |
| RseI | CAYNNNNRTG | 1 cut(s) | 338 |
| SaqAI | TTAA | 1 cut(s) | 634 |
| SatI | GCNGC | 4 cut(s) | 35, 197, 217, 327 |
| Sau3AI | GATC | 3 cut(s) | 127, 425, 432 |
| ScaI | AGTACT | 1 cut(s) | 578 |
| ScrFI | CCNGG | 2 cut(s) | 29, 437 |
| SduI | GDGCHC | 2 cut(s) | 276, 442 |
| SetI | ASST | 8 cut(s) | 24, 57, 84, 102, 374, 385, 526, 588 |
| SfaNI | GCATC | 1 cut(s) | 262 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 338 |
| SphI | GCATGC | 1 cut(s) | 480 |
| Sse9I | AATT | 1 cut(s) | 200 |
| SsiI | CCGC | 3 cut(s) | 16, 216, 326 |
| StyD4I | CCNGG | 2 cut(s) | 27, 435 |
| TaaI | ACNGT | 1 cut(s) | 175 |
| TaiI | ACGT | 1 cut(s) | 24 |
| TaqI | TCGA | 2 cut(s) | 431, 459 |
| TasI | AATT | 1 cut(s) | 200 |
| TatI | WGTACW | 1 cut(s) | 576 |
| TauI | GCSGC | 2 cut(s) | 219, 329 |
| TfiI | GAWTC | 1 cut(s) | 93 |
| Tru1I | TTAA | 1 cut(s) | 634 |
| Tru9I | TTAA | 1 cut(s) | 634 |
| TscAI | CASTG | 1 cut(s) | 226 |
| TseFI | GTSAC | 2 cut(s) | 331, 451 |
| TseI | GCWGC | 2 cut(s) | 34, 196 |
| Tsp45I | GTSAC | 2 cut(s) | 331, 451 |
| TspDTI | ATGAA | 4 cut(s) | 76, 249, 297, 545 |
| TspGWI | ACGGA | 1 cut(s) | 522 |
| TspRI | CASTG | 1 cut(s) | 226 |
| XceI | RCATGY | 2 cut(s) | 480, 598 |
| ZrmI | AGTACT | 1 cut(s) | 578 |