Rorug02G0569700

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Forward (+)
69513519 .. 69514787
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0569700.1

Sequence Viewer

Length: 1269 bp
ATGGGGATGAATAAAACCATTAACAAGAGCTACAATCTTACTTGGGGATTTCCTGTAGATCCTAAGTTTTCTTACCTGGTTCGGCTCCATTTTTGTGAGTTTGAACCTGAGATTACCTTGCCCGGAGACCGAGTGTTCCTAGTCTACATTGCCAATCAAACTGCTGAAGAACGAGCGGACATAGTCATGTGGAGTGGTGGAAATGGGATTCCAGTATACAAAGACTACATTGTGTACATGTCTGGCAGGAGAGGCCAGAAGAAAGTAAATCTTTTTATCTCATTGCAAGCGAATCCAAAAGATCGGCAGACTAAATACAATGATGGCATCTTAAATGGGCTCGAAATCTTCAAACTATTTGACTCTAATGGCAATTCTGTCGATCCAAATCCAGTCCCACCACCAGCACCATTGCACAAAATTTCAAACAAGTTTATTCCTGTGATTGCCATCGTTGCAGGTGTAATTTCCAGCATACTCGGTTTGGTCATCAAGCGAAGATCGAAAGCTAAGGACTCCAGGTCCAACAACAGGGCAACGAAGTTTACCATGACCCCTAGATCACCTTTACCACCTCATTTGTGTCGTTACTTTTCACTGGCAGAGATCAAGGCTGCCACCAAAAACTTCAATGATACTTTCATTATTGGAGGTGGAGGATTTGGCAACGTGTACAAAGGATGCATCGATGGTGGAGCTACTCCAGTTGCAATCAAACGACTCAAACCAGAGTCATCCCAGGGTGCCCACGAGTTTAAGACGGAAATCGAGATGCTCTCCCAACTTCGTCATCGCCATTTGGTTTCGCTCATTGGATATTGTGCTGATAAAGGTGAGATGATTTTGGTATATGATTACATGGCCCGCGGAACCCTCCGTGACCATCTCTACCACACCAATAACCCACCTCTACCCTGGGAGCAACGGCTTCAGATTTGTATTGGCACAGCCCGTGGGTTGCAGTACCTCCACAGTGGTACAAAGGGCACTATCATACACCGTGATGTGAAGAGCACAAACATATTATTGGATGACAAATGGGTGGCCAAAGTTTCGGATTTTGGGTTGTCCAAGGGCATGAATAACATGTCCAAAACCCACATCAGCACAGTGGTGAAAGGCAGTTTTGGGTATCTGGACCCGGTATACTACCGCCGACAATGTCTGACTTCTCAGTCAGACATGTACTCACTTGGTGTCGTGTTGTTTGAGGTATTGTGTATGAGGCCAGCAATGATACAGACAGAAGAGCTGAAGCAAGTGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

422

Amino Acids

47.39

Weight (kDa)

9.46

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 8 - 118 2.4e-10 Malectin-like domain
Malectin PF11721 12 - 77 1.1e-06 Malectin domain
Pkinase PF00069 215 - 416 4.2e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 216 - 408 8.7e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 449
AasI GACNNNNNNGTC 1 cut(s) 1174
Acc36I ACCTGC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 743
AccBSI CCGCTC 1 cut(s) 176
AccI GTMKAC 3 cut(s) 144, 216, 1146
AccII CGCG 1 cut(s) 867
AciI CCGC 4 cut(s) 176, 865, 867, 1153
AclWI GGATC 2 cut(s) 53, 377
AcoI YGGCCR 1 cut(s) 1044
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 2 cut(s) 186, 914
AdeI CACNNNGTG 1 cut(s) 1196
AfaI GTAC 5 cut(s) 236, 674, 965, 979, 1187
AfiI CCNNNNNNNGG 1 cut(s) 531
AflIII ACRYGT 4 cut(s) 237, 669, 1086, 1182
AgsI TTSAA 4 cut(s) 104, 352, 426, 631
AhdI GACNNNNNGTC 1 cut(s) 520
AjnI CCWGG 4 cut(s) 75, 518, 738, 914
AleI CACNNNNGTG 1 cut(s) 1112
AluBI AGCT 4 cut(s) 30, 509, 698, 1252
AluI AGCT 4 cut(s) 30, 509, 698, 1252
Alw21I GWGCWC 1 cut(s) 1016
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 53, 377
AoxI GGCC 4 cut(s) 253, 861, 1044, 1226
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 522, 862, 1138
AsuC2I CCSGG 2 cut(s) 123, 1142
AsuHPI GGTGA 3 cut(s) 555, 845, 1126
AvaII GGWCC 2 cut(s) 522, 1138
BaeGI GKGCMC 2 cut(s) 748, 989
BalI TGGCCA 1 cut(s) 1046
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 342
BauI CACGAG 1 cut(s) 749
Bbv12I GWGCWC 1 cut(s) 1016
BbvI GCAGC 1 cut(s) 601
BccI CCATC 4 cut(s) 317, 458, 683, 891
BceAI ACGGC 1 cut(s) 941
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 4 cut(s) 77, 520, 740, 916
BcnI CCSGG 2 cut(s) 123, 1142
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 3 cut(s) 140, 558, 1267
BfmI CTRYAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 449
BisI GCNGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 616
Bme1390I CCNGG 6 cut(s) 77, 123, 520, 740, 916, 1142
Bme18I GGWCC 2 cut(s) 522, 1138
BmeRI GACNNNNNGTC 1 cut(s) 520
BmgT120I GGNCC 3 cut(s) 522, 862, 1138
BmiI GGNNCC 4 cut(s) 86, 745, 871, 1140
BmrFI CCNGG 6 cut(s) 77, 123, 520, 740, 916, 1142
BmsI GCATC 4 cut(s) 336, 671, 693, 762
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpmI CTGGAG 2 cut(s) 502, 687
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 2 cut(s) 123, 1142
Bsa29I ATCGAT 1 cut(s) 687
BsaBI GATNNNNATC 2 cut(s) 387, 449
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 7 cut(s) 738, 739, 865, 914, 915, 952, 1071
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse1I ACTGG 4 cut(s) 212, 392, 603, 704
Bse3DI GCAATG 4 cut(s) 147, 281, 410, 1239
Bse8I GATNNNNATC 2 cut(s) 387, 449
BseBI CCWGG 4 cut(s) 77, 520, 740, 916
BseCI ATCGAT 1 cut(s) 687
BseDI CCNNGG 7 cut(s) 738, 739, 865, 914, 915, 952, 1071
BseGI GGATG 4 cut(s) 12, 686, 734, 1036
BseJI GATNNNNATC 2 cut(s) 387, 449
BseLI CCNNNNNNNGG 1 cut(s) 531
BseMI GCAATG 4 cut(s) 147, 281, 410, 1239
BseMII CTCAG 2 cut(s) 99, 1187
BseNI ACTGG 4 cut(s) 212, 392, 603, 704
BseSI GKGCMC 2 cut(s) 748, 989
BseXI GCAGC 1 cut(s) 601
Bsh1236I CGCG 1 cut(s) 867
BshFI GGCC 4 cut(s) 255, 863, 1046, 1228
BshNI GGYRCC 1 cut(s) 743
BshVI ATCGAT 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 1016
BsiSI CCGG 2 cut(s) 123, 1142
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 531
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 4 cut(s) 255, 863, 1046, 1228
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 4 cut(s) 342, 748, 989, 1016
Bsp1407I TGTACA 2 cut(s) 234, 672
Bsp143I GATC 6 cut(s) 58, 301, 382, 500, 560, 606
BspACI CCGC 4 cut(s) 176, 865, 867, 1153
BspANI GGCC 4 cut(s) 255, 863, 1046, 1228
BspCNI CTCAG 2 cut(s) 100, 1186
BspDI ATCGAT 1 cut(s) 687
BspFNI CGCG 1 cut(s) 867
BspLI GGNNCC 4 cut(s) 86, 745, 871, 1140
BspMI ACCTGC 1 cut(s) 449
BspPI GGATC 2 cut(s) 53, 377
BspQI GCTCTTC 2 cut(s) 1004, 1242
BspT107I GGYRCC 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 176
BsrDI GCAATG 4 cut(s) 147, 281, 410, 1239
BsrGI TGTACA 2 cut(s) 234, 672
BsrI ACTGG 4 cut(s) 212, 392, 603, 704
BssECI CCNNGG 7 cut(s) 738, 739, 865, 914, 915, 952, 1071
BssMI GATC 6 cut(s) 58, 301, 382, 500, 560, 606
BssNAI GTATAC 2 cut(s) 217, 1147
BssSI CACGAG 1 cut(s) 749
BssT1I CCWWGG 1 cut(s) 1071
Bst1107I GTATAC 2 cut(s) 217, 1147
Bst2BI CACGAG 1 cut(s) 749
Bst2UI CCWGG 4 cut(s) 77, 520, 740, 916
Bst4CI ACNGT 3 cut(s) 974, 1001, 1111
Bst6I CTCTTC 2 cut(s) 1004, 1242
BstAUI TGTACA 2 cut(s) 234, 672
BstC8I GCNNGC 3 cut(s) 288, 865, 1230
BstDEI CTNAG 4 cut(s) 63, 108, 510, 1173
BstDSI CCRYGG 2 cut(s) 865, 952
BstF5I GGATG 4 cut(s) 12, 686, 734, 1036
BstFNI CGCG 1 cut(s) 867
BstKTI GATC 6 cut(s) 61, 304, 385, 503, 563, 609
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 6 cut(s) 58, 301, 382, 500, 560, 606
BstMWI GCNNNNNNNGC 2 cut(s) 252, 455
BstNI CCWGG 4 cut(s) 77, 520, 740, 916
BstNSI RCATGY 3 cut(s) 241, 1090, 1186
BstSCI CCNGG 6 cut(s) 75, 121, 518, 738, 914, 1140
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 2 cut(s) 748, 989
BstUI CGCG 1 cut(s) 867
BstV1I GCAGC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BstZ17I GTATAC 2 cut(s) 217, 1147
Bsu15I ATCGAT 1 cut(s) 687
BsuRI GGCC 4 cut(s) 255, 863, 1046, 1228
BsuTUI ATCGAT 1 cut(s) 687
BtgI CCRYGG 2 cut(s) 865, 952
BtgZI GCGATG 1 cut(s) 776
BtsCI GGATG 4 cut(s) 12, 686, 734, 1036
BtsIMutI CAGTG 3 cut(s) 596, 979, 1116
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 3 cut(s) 288, 865, 1230
Cfr13I GGNCC 3 cut(s) 522, 862, 1138
Cfr42I CCGCGG 1 cut(s) 868
ClaI ATCGAT 1 cut(s) 687
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 5 cut(s) 235, 673, 964, 978, 1186
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 7 cut(s) 187, 238, 550, 859, 1078, 1087, 1183
CviQI GTAC 5 cut(s) 235, 673, 964, 978, 1186
DdeI CTNAG 4 cut(s) 63, 108, 510, 1173
DpnI GATC 6 cut(s) 60, 303, 384, 502, 562, 608
DpnII GATC 6 cut(s) 58, 301, 382, 500, 560, 606
DraIII CACNNNGTG 1 cut(s) 1196
DrdI GACNNNNNNGTC 1 cut(s) 1174
DriI GACNNNNNGTC 1 cut(s) 520
DseDI GACNNNNNNGTC 1 cut(s) 1174
EaeI YGGCCR 1 cut(s) 1044
Eam1104I CTCTTC 2 cut(s) 1004, 1242
Eam1105I GACNNNNNGTC 1 cut(s) 520
EarI CTCTTC 2 cut(s) 1004, 1242
Eco130I CCWWGG 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 522, 1138
Eco57I CTGAAG 2 cut(s) 186, 914
EcoRII CCWGG 4 cut(s) 75, 518, 738, 914
EcoT14I CCWWGG 1 cut(s) 1071
EcoT22I ATGCAT 1 cut(s) 686
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 1071
FaeI CATG 7 cut(s) 190, 241, 553, 862, 1081, 1090, 1186
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 380
FatI CATG 7 cut(s) 186, 237, 549, 858, 1077, 1086, 1182
FauI CCCGC 1 cut(s) 872
FblI GTMKAC 3 cut(s) 144, 216, 1146
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 4 cut(s) 19, 693, 721, 1043
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 3 cut(s) 140, 558, 1267
GluI GCNGC 1 cut(s) 615
GsuI CTGGAG 2 cut(s) 502, 687
HaeIII GGCC 4 cut(s) 255, 863, 1046, 1228
HapII CCGG 2 cut(s) 123, 1142
Hin1II CATG 7 cut(s) 190, 241, 553, 862, 1081, 1090, 1186
HinfI GANTC 6 cut(s) 208, 292, 362, 515, 720, 731
HpaII CCGG 2 cut(s) 123, 1142
HphI GGTGA 3 cut(s) 555, 845, 1126
Hpy166II GTNNAC 6 cut(s) 145, 217, 235, 546, 673, 1147
Hpy188I TCNGA 4 cut(s) 933, 1057, 1167, 1180
Hpy188III TCNNGA 2 cut(s) 769, 1136
Hpy8I GTNNAC 6 cut(s) 145, 217, 235, 546, 673, 1147
HpyCH4III ACNGT 3 cut(s) 974, 1001, 1111
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 6 cut(s) 286, 415, 458, 684, 710, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 455
HpyF3I CTNAG 4 cut(s) 63, 108, 510, 1173
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 7 cut(s) 190, 241, 553, 862, 1081, 1090, 1186
KspI CCGCGG 1 cut(s) 868
Kzo9I GATC 6 cut(s) 58, 301, 382, 500, 560, 606
LguI GCTCTTC 2 cut(s) 1004, 1242
LmnI GCTCC 3 cut(s) 90, 695, 919
Lsp1109I GCAGC 1 cut(s) 601
LweI GCATC 4 cut(s) 336, 671, 693, 762
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 3 cut(s) 140, 558, 1267
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 3 cut(s) 587, 878, 1261
MalI GATC 6 cut(s) 60, 303, 384, 502, 562, 608
MbiI CCGCTC 1 cut(s) 176
MboI GATC 6 cut(s) 58, 301, 382, 500, 560, 606
MboII GAAGA 6 cut(s) 179, 271, 340, 510, 1021, 1259
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 4 cut(s) 342, 748, 989, 1016
MlsI TGGCCA 1 cut(s) 1046
MluCI AATT 3 cut(s) 373, 420, 465
MluNI TGGCCA 1 cut(s) 1046
MlyI GAGTC 4 cut(s) 356, 509, 714, 740
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 9 cut(s) 245, 585, 644, 650, 884, 918, 977, 1204, 1218
Mox20I TGGCCA 1 cut(s) 1046
Mph1103I ATGCAT 1 cut(s) 686
MscI TGGCCA 1 cut(s) 1046
MseI TTAA 3 cut(s) 21, 332, 756
MslI CAYNNNNRTG 4 cut(s) 93, 185, 1002, 1112
Msp20I TGGCCA 1 cut(s) 1046
MspA1I CMGCKG 1 cut(s) 867
MspI CCGG 2 cut(s) 123, 1142
MspR9I CCNGG 6 cut(s) 77, 123, 520, 740, 916, 1142
MvaI CCWGG 4 cut(s) 77, 520, 740, 916
MvnI CGCG 1 cut(s) 867
MwoI GCNNNNNNNGC 2 cut(s) 252, 455
NciI CCSGG 2 cut(s) 123, 1142
NdeII GATC 6 cut(s) 58, 301, 382, 500, 560, 606
NlaIII CATG 7 cut(s) 190, 241, 553, 862, 1081, 1090, 1186
NlaIV GGNNCC 4 cut(s) 86, 745, 871, 1140
NmuCI GTSAC 2 cut(s) 878, 1261
NsiI ATGCAT 1 cut(s) 686
NspI RCATGY 3 cut(s) 241, 1090, 1186
OliI CACNNNNGTG 1 cut(s) 1112
PaqCI CACCTGC 1 cut(s) 449
PasI CCCWGGG 2 cut(s) 739, 915
PciI ACATGT 3 cut(s) 237, 1086, 1182
PciSI GCTCTTC 2 cut(s) 1004, 1242
PfeI GAWTC 2 cut(s) 208, 292
PflFI GACNNNGTC 2 cut(s) 182, 1161
PkrI GCNGC 1 cut(s) 616
PleI GAGTC 4 cut(s) 356, 509, 714, 739
PpsI GAGTC 4 cut(s) 356, 509, 714, 739
PscI ACATGT 3 cut(s) 237, 1086, 1182
Psp6I CCWGG 4 cut(s) 75, 518, 738, 914
PspGI CCWGG 4 cut(s) 75, 518, 738, 914
PspN4I GGNNCC 4 cut(s) 86, 745, 871, 1140
PspPI GGNCC 3 cut(s) 522, 862, 1138
PsuI RGATCY 1 cut(s) 58
PsyI GACNNNGTC 2 cut(s) 182, 1161
RsaI GTAC 5 cut(s) 236, 674, 965, 979, 1187
RsaNI GTAC 5 cut(s) 235, 673, 964, 978, 1186
RseI CAYNNNNRTG 4 cut(s) 93, 185, 1002, 1112
SacII CCGCGG 1 cut(s) 868
SapI GCTCTTC 2 cut(s) 1004, 1242
SaqAI TTAA 3 cut(s) 21, 332, 756
SatI GCNGC 1 cut(s) 615
Sau3AI GATC 6 cut(s) 58, 301, 382, 500, 560, 606
Sau96I GGNCC 3 cut(s) 522, 862, 1138
SchI GAGTC 4 cut(s) 356, 509, 714, 740
ScrFI CCNGG 6 cut(s) 77, 123, 520, 740, 916, 1142
SduI GDGCHC 4 cut(s) 342, 748, 989, 1016
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 4 cut(s) 336, 671, 693, 762
SfcI CTRYAG 1 cut(s) 54
Sfr303I CCGCGG 1 cut(s) 868
SgrBI CCGCGG 1 cut(s) 868
SinI GGWCC 2 cut(s) 522, 1138
SmiMI CAYNNNNRTG 4 cut(s) 93, 185, 1002, 1112
Sse9I AATT 3 cut(s) 373, 420, 465
SsiI CCGC 4 cut(s) 176, 865, 867, 1153
SspMI CTAG 3 cut(s) 140, 558, 1267
StyD4I CCNGG 6 cut(s) 75, 121, 518, 738, 914, 1140
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 3 cut(s) 974, 1001, 1111
TaiI ACGT 1 cut(s) 672
TaqI TCGA 5 cut(s) 342, 381, 503, 687, 768
TaqII GACCGA 1 cut(s) 144
TasI AATT 3 cut(s) 373, 420, 465
TatI WGTACW 3 cut(s) 234, 672, 1185
TfiI GAWTC 2 cut(s) 208, 292
Tru1I TTAA 3 cut(s) 21, 332, 756
Tru9I TTAA 3 cut(s) 21, 332, 756
TscAI CASTG 3 cut(s) 603, 979, 1116
TseFI GTSAC 2 cut(s) 878, 1261
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 2 cut(s) 878, 1261
TspDTI ATGAA 3 cut(s) 23, 631, 1094
TspGWI ACGGA 2 cut(s) 776, 866
TspRI CASTG 3 cut(s) 603, 979, 1116
Tth111I GACNNNGTC 2 cut(s) 182, 1161
VpaK11BI GGWCC 2 cut(s) 522, 1138
XapI RAATTY 1 cut(s) 420
XceI RCATGY 3 cut(s) 241, 1090, 1186
XcmI CCANNNNNNNNNTGG 1 cut(s) 912
XmiI GTMKAC 3 cut(s) 144, 216, 1146
XspI CTAG 3 cut(s) 140, 558, 1267
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.