FvH4_5g11280

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000056
Physical Location & Seq
Reverse (-)
6393083 .. 6395694
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11280.t1

Sequence Viewer

Length: 1149 bp
ATGGTCCCTATCTCCGATTTCAAGCTCTTATCGGAAAGGCCTCAGTGGACAAAACGCATGGCTGATACCCTGTTTGACATGGGTGTGCCAAGGCGGGAGCACCTGAGGATCATCAAAAGTATATTTACAATGGCTAAAAATGCTGTTCCCGGGACGTCTATTTGTGCAGCGATAGGGGACGCCGCTCTTCATATAATAGAGAATAATGAGACTAGTAGTGTGTACTATTCCAGTACTAGTGCACATATGTTTAACCGGGACATATTGATGACTCCTGCGGCGAAATCTTGCCTTGAGGACCTTGATCACTTTGACAATGATGTTGCAAAAGAAGAAGAAGGGGTACTTGATCTTGATCTTGATCATCAACCCTTGATGATTACCCGCTTGCCGTGCTCACACCATTTTCATGGATACTGTATTGTCCGGTGGCTCAAGATTCAGCACTTATGTCCCGTGTGCCGATATCCAATGCCAATTGAGGAAGAGACTGACAGGCCTAAATCCAAAAGACACAGGGATATCCACTCAATAAATCTGTGTGCTATTTCCTCACCAACTCATGACATTCTCTATGGATATTCTATAATTTCTATTGAAGAGAAGAAACTATTCCAAAGAGCTGTTGCATCTGGGAAACTGAGCAAGATGATCAAGCCTTGGGATCCTTGGTGGTTGAAGCCTTCTGCTAGAACAATATCGTTCAGCAAAGAAGGAACTCAACTAATTCAACCGCTTGCCAAAGAGGATGAAACAATGTCAACAGAAGATGATCTAGAAAGTAGTCAAGCAAGTGAGATTCCACCGGGTCCTGATACACCACTGCCTCCCCTCAGCAAGCTTAGCTCCGCAAAGCCATCACCATTCTTAGTTGTTCATCTGGTCGACATTATATACAGCTACTGCTTAGTCCTGGAAGCTCTATCTTACTGCCTGGAGAAAATTGACTTCCTCATGTGTTGGGTCCATGAGCTACCTGGTGAAGCTTGGTCTTCCTTAGGAGCCATCGTAAGGGCAGAGAAAACCTTAGCTATGAACTATGAAGAAGCTGTTTCAAGGTCTCGCAAACCGGACAACAAATATGAACCCAGGAGATCTAGGCAGTCCCTGCTTCTTGTTAAACATGAGCACTGTTGTATTGACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

383

Amino Acids

43.48

Weight (kDa)

6.06

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 123 - 154 7.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 127 - 155 1e-08 Ring finger domain
zf-rbx1 PF12678 127 - 155 5.3e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 885
AciI CCGC 6 cut(s) 94, 183, 278, 385, 734, 849
AclWI GGATC 3 cut(s) 116, 659, 672
AcyI GRCGYC 2 cut(s) 155, 180
AfaI GTAC 3 cut(s) 224, 235, 345
AfiI CCNNNNNNNGG 1 cut(s) 1011
AgsI TTSAA 5 cut(s) 22, 599, 679, 731, 1056
AhlI ACTAGT 2 cut(s) 212, 236
AjnI CCWGG 4 cut(s) 912, 933, 976, 1088
Alw21I GWGCWC 4 cut(s) 102, 244, 398, 1131
Alw26I GTCTC 3 cut(s) 203, 482, 1065
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 3 cut(s) 116, 659, 672
AlwNI CAGNNNCTG 2 cut(s) 903, 1108
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 38, 497
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 611
AspS9I GGNCC 4 cut(s) 4, 298, 809, 964
AsuC2I CCSGG 4 cut(s) 150, 151, 257, 807
AsuHPI GGTGA 3 cut(s) 546, 852, 992
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 4 cut(s) 4, 298, 809, 964
AxyI CCTNAGG 2 cut(s) 104, 997
BaeGI GKGCMC 1 cut(s) 244
BamHI GGATCC 1 cut(s) 664
BarI GAAGNNNNNNTAC 2 cut(s) 327, 359
BbsI GAAGAC 1 cut(s) 984
Bbv12I GWGCWC 4 cut(s) 102, 244, 398, 1131
BbvCI CCTCAGC 1 cut(s) 833
BbvI GCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 865, 1013
BceAI ACGGC 1 cut(s) 376
BciT130I CCWGG 4 cut(s) 914, 935, 978, 1090
BciVI GTATCC 1 cut(s) 407
BclI TGATCA 3 cut(s) 304, 361, 651
BcnI CCSGG 4 cut(s) 150, 151, 257, 807
BcoDI GTCTC 3 cut(s) 203, 482, 1065
BcuI ACTAGT 2 cut(s) 212, 236
BfaI CTAG 5 cut(s) 213, 237, 690, 776, 1098
BfuI GTATCC 1 cut(s) 407
BglII AGATCT 1 cut(s) 1094
BisI GCNGC 3 cut(s) 168, 183, 279
BlpI GCTNAGC 1 cut(s) 842
BlsI GCNGC 3 cut(s) 169, 184, 280
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 8 cut(s) 150, 151, 257, 807, 914, 935, 978, 1090
Bme18I GGWCC 4 cut(s) 4, 298, 809, 964
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 4 cut(s) 4, 298, 809, 964
BmiI GGNNCC 5 cut(s) 6, 666, 810, 965, 1003
BmrFI CCNGG 8 cut(s) 150, 151, 257, 807, 914, 935, 978, 1090
BmsI GCATC 1 cut(s) 638
BpiI GAAGAC 1 cut(s) 984
BpmI CTGGAG 1 cut(s) 956
Bpu10I CCTNAGC 2 cut(s) 833, 1027
Bpu1102I GCTNAGC 1 cut(s) 842
BpuEI CTTGAG 2 cut(s) 314, 419
BpuMI CCSGG 4 cut(s) 150, 151, 257, 807
BsaBI GATNNNNATC 2 cut(s) 354, 360
BsaHI GRCGYC 2 cut(s) 155, 180
BsaI GGTCTC 1 cut(s) 1065
BsaJI CCNNGG 5 cut(s) 89, 149, 659, 668, 1088
BsaWI WCCGGW 2 cut(s) 426, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 993, 1023
Bsc4I CCNNNNNNNGG 1 cut(s) 1011
Bse1I ACTGG 1 cut(s) 231
Bse21I CCTNAGG 2 cut(s) 104, 997
Bse8I GATNNNNATC 2 cut(s) 354, 360
BseBI CCWGG 4 cut(s) 914, 935, 978, 1090
BseDI CCNNGG 5 cut(s) 89, 149, 659, 668, 1088
BseGI GGATG 1 cut(s) 754
BseJI GATNNNNATC 2 cut(s) 354, 360
BseLI CCNNNNNNNGG 1 cut(s) 1011
BseMII CTCAG 4 cut(s) 56, 95, 632, 847
BseNI ACTGG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 2 cut(s) 40, 499
BsiHKAI GWGCWC 4 cut(s) 102, 244, 398, 1131
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 5 cut(s) 150, 256, 427, 806, 1070
BslFI GGGAC 5 cut(s) 166, 191, 272, 438, 1090
BslI CCNNNNNNNGG 1 cut(s) 1011
BsmAI GTCTC 3 cut(s) 203, 482, 1065
BsmFI GGGAC 5 cut(s) 166, 191, 272, 438, 1090
BsnI GGCC 2 cut(s) 40, 499
Bso31I GGTCTC 1 cut(s) 1065
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 4 cut(s) 102, 244, 398, 1131
Bsp143I GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
Bsp1720I GCTNAGC 1 cut(s) 842
BspACI CCGC 6 cut(s) 94, 183, 278, 385, 734, 849
BspANI GGCC 2 cut(s) 40, 499
BspCNI CTCAG 4 cut(s) 55, 96, 633, 846
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 5 cut(s) 6, 666, 810, 965, 1003
BspPI GGATC 3 cut(s) 116, 659, 672
BspQI GCTCTTC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 1065
BsrBI CCGCTC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 5 cut(s) 89, 149, 659, 668, 1088
BssMI GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
BssNI GRCGYC 2 cut(s) 155, 180
BssT1I CCWWGG 3 cut(s) 89, 659, 668
Bst2UI CCWGG 4 cut(s) 914, 935, 978, 1090
Bst4CI ACNGT 2 cut(s) 419, 1133
Bst6I CTCTTC 3 cut(s) 192, 480, 594
BstACI GRCGYC 2 cut(s) 155, 180
BstAPI GCANNNNNTGC 1 cut(s) 1108
BstC8I GCNNGC 3 cut(s) 389, 738, 839
BstDEI CTNAG 9 cut(s) 42, 104, 641, 833, 842, 868, 907, 997, 1027
BstF5I GGATG 1 cut(s) 754
BstKTI GATC 9 cut(s) 111, 307, 352, 358, 364, 654, 667, 775, 1097
BstMAI GTCTC 3 cut(s) 203, 482, 1065
BstMBI GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
BstMWI GCNNNNNNNGC 4 cut(s) 140, 393, 843, 1108
BstNI CCWGG 4 cut(s) 914, 935, 978, 1090
BstSCI CCNGG 8 cut(s) 148, 149, 255, 805, 912, 933, 976, 1088
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 2 cut(s) 664, 1094
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 2 cut(s) 664, 1094
Bsu36I CCTNAGG 2 cut(s) 104, 997
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 40, 499
BtsCI GGATG 1 cut(s) 754
BtsI GCAGTG 1 cut(s) 821
BtsIMutI CAGTG 3 cut(s) 50, 821, 1129
Cac8I GCNNGC 3 cut(s) 389, 738, 839
CaiI CAGNNNCTG 2 cut(s) 903, 1108
CciI TCATGA 1 cut(s) 562
Cfr13I GGNCC 4 cut(s) 4, 298, 809, 964
Cfr9I CCCGGG 1 cut(s) 149
CseI GACGC 1 cut(s) 188
CsiI ACCWGGT 1 cut(s) 976
Csp6I GTAC 3 cut(s) 223, 234, 344
CviAII CATG 7 cut(s) 58, 79, 410, 563, 955, 968, 1124
CviQI GTAC 3 cut(s) 223, 234, 344
DdeI CTNAG 9 cut(s) 42, 104, 641, 833, 842, 868, 907, 997, 1027
DpnI GATC 9 cut(s) 110, 306, 351, 357, 363, 653, 666, 774, 1096
DpnII GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
Eam1104I CTCTTC 3 cut(s) 192, 480, 594
EarI CTCTTC 3 cut(s) 192, 480, 594
Eco130I CCWWGG 3 cut(s) 89, 659, 668
Eco147I AGGCCT 2 cut(s) 40, 499
Eco31I GGTCTC 1 cut(s) 1065
Eco32I GATATC 2 cut(s) 467, 523
Eco47I GGWCC 4 cut(s) 4, 298, 809, 964
Eco81I CCTNAGG 2 cut(s) 104, 997
Eco88I CYCGRG 1 cut(s) 149
EcoO109I RGGNCCY 2 cut(s) 298, 809
EcoRII CCWGG 4 cut(s) 912, 933, 976, 1088
EcoRV GATATC 2 cut(s) 467, 523
EcoT14I CCWWGG 3 cut(s) 89, 659, 668
ErhI CCWWGG 3 cut(s) 89, 659, 668
FaeI CATG 7 cut(s) 61, 82, 413, 566, 958, 971, 1127
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 5 cut(s) 166, 191, 272, 438, 1090
FatI CATG 7 cut(s) 57, 78, 409, 562, 954, 967, 1123
FauI CCCGC 2 cut(s) 87, 392
FauNDI CATATG 1 cut(s) 246
FbaI TGATCA 3 cut(s) 304, 361, 651
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 3 cut(s) 168, 183, 279
FokI GGATG 1 cut(s) 761
Fsp4HI GCNGC 3 cut(s) 168, 183, 279
FspBI CTAG 5 cut(s) 213, 237, 690, 776, 1098
GluI GCNGC 3 cut(s) 168, 183, 279
GsuI CTGGAG 1 cut(s) 956
HaeIII GGCC 2 cut(s) 40, 499
HapII CCGG 5 cut(s) 150, 256, 427, 806, 1070
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 2 cut(s) 155, 180
Hin1II CATG 7 cut(s) 61, 82, 413, 566, 958, 971, 1127
HincII GTYRAC 2 cut(s) 762, 886
HindII GTYRAC 2 cut(s) 762, 886
HindIII AAGCTT 2 cut(s) 839, 984
HinfI GANTC 3 cut(s) 271, 439, 799
HpaII CCGG 5 cut(s) 150, 256, 427, 806, 1070
HphI GGTGA 3 cut(s) 546, 852, 992
Hpy166II GTNNAC 5 cut(s) 48, 223, 242, 762, 886
Hpy188I TCNGA 2 cut(s) 16, 34
Hpy188III TCNNGA 6 cut(s) 353, 359, 436, 563, 776, 812
Hpy8I GTNNAC 5 cut(s) 48, 223, 242, 762, 886
HpyAV CCTTC 3 cut(s) 332, 693, 707
HpyCH4III ACNGT 2 cut(s) 419, 1133
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 167, 242, 326, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 393, 843, 1108
HpyF3I CTNAG 9 cut(s) 42, 104, 641, 833, 842, 868, 907, 997, 1027
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 2 cut(s) 155, 180
Hsp92II CATG 7 cut(s) 61, 82, 413, 566, 958, 971, 1127
Ksp22I TGATCA 3 cut(s) 304, 361, 651
Kzo9I GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 97, 851, 1001
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 638
MabI ACCWGGT 1 cut(s) 976
MaeI CTAG 5 cut(s) 213, 237, 690, 776, 1098
MaeII ACGT 1 cut(s) 155
MalI GATC 9 cut(s) 110, 306, 351, 357, 363, 653, 666, 774, 1096
MbiI CCGCTC 1 cut(s) 185
MboI GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
MboII GAAGA 9 cut(s) 179, 344, 347, 497, 611, 616, 779, 984, 1055
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 2 cut(s) 664, 1094
MhlI GDGCHC 4 cut(s) 102, 244, 398, 1131
MluCI AATT 4 cut(s) 477, 588, 726, 942
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 9 cut(s) 51, 99, 289, 475, 562, 739, 837, 842, 962
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 2 cut(s) 252, 1119
MslI CAYNNNNRTG 3 cut(s) 83, 266, 408
MspI CCGG 5 cut(s) 150, 256, 427, 806, 1070
MspR9I CCNGG 8 cut(s) 150, 151, 257, 807, 914, 935, 978, 1090
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 4 cut(s) 914, 935, 978, 1090
MwoI GCNNNNNNNGC 4 cut(s) 140, 393, 843, 1108
NciI CCSGG 4 cut(s) 150, 151, 257, 807
NdeI CATATG 1 cut(s) 246
NdeII GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
NlaIII CATG 7 cut(s) 61, 82, 413, 566, 958, 971, 1127
NlaIV GGNNCC 5 cut(s) 6, 666, 810, 965, 1003
PagI TCATGA 1 cut(s) 562
PceI AGGCCT 2 cut(s) 40, 499
PciSI GCTCTTC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 2 cut(s) 439, 799
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 3 cut(s) 169, 184, 280
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 2 cut(s) 298, 809
Psp5II RGGWCCY 2 cut(s) 298, 809
Psp6I CCWGG 4 cut(s) 912, 933, 976, 1088
PspGI CCWGG 4 cut(s) 912, 933, 976, 1088
PspN4I GGNNCC 5 cut(s) 6, 666, 810, 965, 1003
PspPI GGNCC 4 cut(s) 4, 298, 809, 964
PspPPI RGGWCCY 2 cut(s) 298, 809
PstNI CAGNNNCTG 2 cut(s) 903, 1108
PsuI RGATCY 2 cut(s) 664, 1094
RsaI GTAC 3 cut(s) 224, 235, 345
RsaNI GTAC 3 cut(s) 223, 234, 344
RseI CAYNNNNRTG 3 cut(s) 83, 266, 408
SalI GTCGAC 1 cut(s) 884
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 252, 1119
SatI GCNGC 3 cut(s) 168, 183, 279
Sau3AI GATC 9 cut(s) 108, 304, 349, 355, 361, 651, 664, 772, 1094
Sau96I GGNCC 4 cut(s) 4, 298, 809, 964
ScaI AGTACT 1 cut(s) 235
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 8 cut(s) 150, 151, 257, 807, 914, 935, 978, 1090
SduI GDGCHC 4 cut(s) 102, 244, 398, 1131
SexAI ACCWGGT 1 cut(s) 976
SfaNI GCATC 1 cut(s) 638
SinI GGWCC 4 cut(s) 4, 298, 809, 964
SmaI CCCGGG 1 cut(s) 151
SmiMI CAYNNNNRTG 3 cut(s) 83, 266, 408
SmlI CTYRAG 2 cut(s) 293, 434
SmoI CTYRAG 2 cut(s) 293, 434
SpeI ACTAGT 2 cut(s) 212, 236
Sse9I AATT 4 cut(s) 477, 588, 726, 942
SseBI AGGCCT 2 cut(s) 40, 499
SsiI CCGC 6 cut(s) 94, 183, 278, 385, 734, 849
SspMI CTAG 5 cut(s) 213, 237, 690, 776, 1098
StuI AGGCCT 2 cut(s) 40, 499
StyD4I CCNGG 8 cut(s) 148, 149, 255, 805, 912, 933, 976, 1088
StyI CCWWGG 3 cut(s) 89, 659, 668
TaaI ACNGT 2 cut(s) 419, 1133
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 885
TasI AATT 4 cut(s) 477, 588, 726, 942
TatI WGTACW 2 cut(s) 222, 233
TauI GCSGC 2 cut(s) 185, 281
TfiI GAWTC 2 cut(s) 439, 799
Tru1I TTAA 2 cut(s) 252, 1119
Tru9I TTAA 2 cut(s) 252, 1119
TscAI CASTG 3 cut(s) 50, 828, 1136
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 7 cut(s) 179, 398, 765, 866, 1049, 1056, 1098
TspMI CCCGGG 1 cut(s) 149
TspRI CASTG 3 cut(s) 50, 828, 1136
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 4 cut(s) 4, 298, 809, 964
XbaI TCTAGA 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 974
XmaI CCCGGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 5 cut(s) 213, 237, 690, 776, 1098
ZraI GACGTC 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.