Rorug02G0569400

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Forward (+)
69479665 .. 69482232
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0569400.1

Sequence Viewer

Length: 2568 bp
ATGCCAAATACCAACATGAAACCAACCGTCGCTCCTCTATACCTGTTCTTGTTTCTTCACATCCACACCCTACTTGTGTCCGGTGATCCACCACCTATCTACACTCCGGTGGAAGATATCACTCTCAACTGTGGCTACTCCGGTAGCTCACGGGATTTATATAGTAATCGCAATTGGACTGGAGATATCAACTCACAGTTCTCCCCCATAGAAGCTGTTAACACCACCTCCCAAGTCAAAGAAGCACCACCTTCCTCCTCCTCAGCTAGCCAAGTACCATACACCACAGCACGGTTATCTCGTTACAAATTTACGTACCGATTTTACAACCTCACTGCTGGCCAAAAGTTCATTCGGTTGTATTTCAACCCAGCTTCGTACCCAAACTTCGAGCCCTCCAAAGCTCTCTTCTCTGTCACAATCGGTCGGTATACAGTTCTCAAAGACTTCAATGCTTCAGCTACTGCGGATGCTAATTTTATGGAGACTCTATATAAAGAATTCTGTTTAAATATTGACAATGAAGGAGAGAATATAAACATCACCTTCACTCCAAGCACCAAAGCCAAAGGTACATACGCATTTATCAACGGAATTGAAATCGTTTCAATGCCAACCAATCTTTACTACTCACCAACACAGAGCTACGGGGTGTCATATCCGGACAACGAAGTGAACTATTACATAGAAAACAACACTGCACTGGAGATGGTCTATCGAATCAACGTCGGTGGAAGCCCAGTCTCGCCCAATGAAGACACCGGCATGTACCGGGAGTGGGATAGCGCCGACGACATCTACCTGGATGATTTAAGTAGAAGATTCAGCGTGAAATCATCAAACAATACCATTGAGCTCAGTTTTGAAGCAGTGCCGGAATACTCTGCCCCAAAAGCAGTTTACGTAACAGGTCGGTCAATGGGGGGGAACAATACCTTCAACAAGAGCTACAATCTCACCTGGGCATTTCCTGTGGACTCAAACTTCTCGTACCTGGTTAGGCTGCACTTTTGCGAGTTCGAGTCTGTCATTACTCAACCTAGGGACCGAGCATTTCTAATCTACATAGCCAATATAACCACAGAGGAAGTAGCCGACGTAATAATGTGGAGCGGTGGGAATGGGAGTCCGGTATACAAGGACTATTATGTATACATGACTGGCCCTGTGAACTCAAAGGAAGTAAATCTCTTTGTCACCCTTCAAGCAAACCCACGCGATTCGGAAACTGGATACAACGATGCCATCTTGAACGGGCTCGAGATCTTCAAACTTAATAACTCAATTGGTAATCTAGCTGGGCCGAACCCATCTCCACCACCAAAGGCGATGCAGTCAAGCCCCAACAAGCCCAACAAGAAGTCAACCCATATGCTTGCCATTGTTCCTAGCATACTACTGGTACTTTTTCTCTCTTTGCTCGGGTTTTTAGTCTTTAGCGGAGGGCATTGGGAAGTCAAAGACTCTGGCTCTAGCTACCAAATAGAAAACTCATTACTACCGTCTGATTTGTGCCATTACTTTTCACTGACGGAGATCAAGGCTGCCACCAAAAATTTCGATGACAGTTTTATTATTGGAGTTGGCGGGTTTGGCCACGTGTACAAAGGACACTTTGATGATGGGGCCACCCTCGTTGCAATCAAACGGCTCAAAGCCACATCATCACAGGGCGCCCATGAGTTCATGACAGAAATCAAGATGCTCTCTGGACTGCGCCACCACCATTTGGTGTCTTTGATCGGATATTGTGCCGATCAAGGTGAGATGGTCTTGGTGTACGATTACATGGCACGTGGGACCCTTAGTGACCATTTGCACCACACCAAGAAACCACATCTTCCTTGGGAACAACGACTTCGGATTTGTATTGGTGCAGCGCAAGGTTTGCACTACCTTCACACAGGTACCAAAGGCACCATCATTCACCGTGACGTAAAGAGCACAAACATATTACTAGACGAGAAATGGGTAGCCAAGGTTTCTGATTTTGGGTTGTCAAAAATGGGTAATATCACAATCTCCAAAACCCACATTAGCACGAAGGTGAAGGGTAGTTTCGGATATCTTGACCCTGATTACTACCGGCGTCAACAATTGACTGAGAAGTCCGACGTGTACTCATTTGGCGTAGTGTTATGCGAAGTATTGTGTGGGAGGCCAGCTGTGACCATCGTGGTTAATAATCGAGTTGGCCTGGCTGGATGGGCCAAAAAGTGTTATCGCGATGGAAAACTTGATCAGATTGTTGACCCGAATTTGAAGGGTGAAATTGCAGTTCGATGCTTGCATAGATTTGCTTCCATTGCAATGAGTTGCATGGATGATAATGGGATCAATCGGCCGCCAATGGATGATGTTGTGAGAGGGCTTCAGTTTGCATTGCAGATGCAGGAAAACAACGAGGATTATATTGATCACATTGAAAGGACGGTTCAACATGAGATTTCATTGATCAAGGACAATGAAGGGTCTTGTTCTAGTGAGCAAAGCCGTGGGGCGAAGGAATCCATCCAAGAGTTGACTAGAACAATTTTCTCCGAGATCATTGATCCGGTTGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

855

Amino Acids

95.64

Weight (kDa)

6.05

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 42 - 424 2.5e-26 Malectin-like domain
Malectin PF11721 42 - 175 2.1e-06 Malectin domain
Pkinase PF00069 525 - 724 1.8e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 526 - 789 5.1e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2107
Acc65I GGTACC 1 cut(s) 1907
AccB1I GGYRCC 3 cut(s) 1673, 1907, 1916
AccB7I CCANNNNNTGG 1 cut(s) 1729
AccBSI CCGCTC 1 cut(s) 1113
AccI GTMKAC 3 cut(s) 431, 1134, 1152
AccII CGCG 2 cut(s) 1218, 2226
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 5 cut(s) 467, 1113, 1440, 1587, 2345
AclWI GGATC 3 cut(s) 80, 2342, 2546
AcoI YGGCCR 3 cut(s) 340, 1594, 2342
AcsI RAATTY 4 cut(s) 308, 500, 1555, 2257
AcuI CTGAAG 2 cut(s) 441, 2357
AcvI CACGTG 2 cut(s) 1600, 1796
AcyI GRCGYC 2 cut(s) 1674, 2089
AfiI CCNNNNNNNGG 3 cut(s) 291, 778, 1729
AflIII ACRYGT 2 cut(s) 1599, 2115
AjiI CACGTC 1 cut(s) 2116
AjnI CCWGG 4 cut(s) 801, 959, 993, 2196
AjuI GAANNNNNNNTTGG 4 cut(s) 336, 368, 392, 424
AleI CACNNNNGTG 2 cut(s) 107, 2045
Alw21I GWGCWC 2 cut(s) 858, 1946
Alw26I GTCTC 2 cut(s) 479, 748
AlwI GGATC 3 cut(s) 80, 2342, 2546
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 2 cut(s) 1259, 1421
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 9 cut(s) 340, 1162, 1301, 1594, 1626, 2159, 2194, 2208, 2342
ApeKI GCWGC 3 cut(s) 1003, 1544, 1877
ApoI RAATTY 4 cut(s) 308, 500, 1555, 2257
ArsI GACNNNNNNTTYG 2 cut(s) 1848, 1880
Asp718I GGTACC 1 cut(s) 1907
AspA2I CCTAGG 1 cut(s) 1040
AspLEI GCGC 4 cut(s) 788, 1676, 1719, 1882
AspS9I GGNCC 6 cut(s) 1045, 1163, 1301, 1626, 1800, 2208
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 9 cut(s) 95, 535, 624, 949, 1189, 1775, 1919, 2059, 2279
AsuNHI GCTAGC 1 cut(s) 266
AvaI CYCGRG 2 cut(s) 1259, 1421
AvaII GGWCC 2 cut(s) 1045, 1800
AvrII CCTAGG 1 cut(s) 1040
BaeI ACNNNNGTAYC 2 cut(s) 1891, 1924
BalI TGGCCA 2 cut(s) 342, 1596
BanI GGYRCC 3 cut(s) 1673, 1907, 1916
BanII GRGCYC 3 cut(s) 396, 858, 1260
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BbrPI CACGTG 2 cut(s) 1600, 1796
BbsI GAAGAC 1 cut(s) 762
Bbv12I GWGCWC 2 cut(s) 858, 1946
BbvCI CCTCAGC 1 cut(s) 262
BbvI GCAGC 3 cut(s) 990, 1531, 1889
BceAI ACGGC 2 cut(s) 1664, 2478
BciT130I CCWGG 4 cut(s) 803, 961, 995, 2198
BciVI GTATCC 1 cut(s) 1226
BclI TGATCA 3 cut(s) 2239, 2416, 2454
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 479, 748
BfaI CTAG 8 cut(s) 267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
BfoI RGCGCY 2 cut(s) 789, 1677
BfuI GTATCC 1 cut(s) 1226
BglII AGATCT 1 cut(s) 1263
BisI GCNGC 4 cut(s) 1004, 1545, 1878, 2345
BlnI CCTAGG 1 cut(s) 1040
BlsI GCNGC 4 cut(s) 1005, 1546, 1879, 2346
Bme1390I CCNGG 5 cut(s) 773, 803, 961, 995, 2198
Bme18I GGWCC 2 cut(s) 1045, 1800
BmeT110I CYCGRG 2 cut(s) 1259, 1421
BmgBI CACGTC 1 cut(s) 2116
BmgT120I GGNCC 6 cut(s) 1045, 1163, 1301, 1626, 1800, 2208
BmiI GGNNCC 7 cut(s) 1046, 1627, 1675, 1801, 1802, 1909, 1918
BmrFI CCNGG 5 cut(s) 773, 803, 961, 995, 2198
BmrI ACTGGG 1 cut(s) 734
BmsI GCATC 6 cut(s) 460, 1231, 1320, 1692, 2273, 2379
BmtI GCTAGC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 2 cut(s) 201, 725
Bpu10I CCTNAGC 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 773
BsaAI YACGTR 4 cut(s) 315, 904, 1600, 1796
BsaHI GRCGYC 2 cut(s) 1674, 2089
BsaJI CCNNGG 5 cut(s) 960, 1040, 1844, 1977, 2494
BsaWI WCCGGW 6 cut(s) 80, 106, 140, 661, 1129, 2554
BsaXI ACNNNNNCTCC 6 cut(s) 16, 46, 212, 242, 535, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 778, 1729
Bse118I RCCGGY 2 cut(s) 761, 2085
Bse1I ACTGG 6 cut(s) 184, 708, 740, 1165, 1234, 1404
Bse3DI GCAATG 3 cut(s) 2304, 2316, 2381
BseAI TCCGGA 1 cut(s) 661
BseBI CCWGG 4 cut(s) 803, 961, 995, 2198
BseDI CCNNGG 5 cut(s) 960, 1040, 1844, 1977, 2494
BseGI GGATG 7 cut(s) 60, 475, 811, 2210, 2329, 2359, 2511
BseLI CCNNNNNNNGG 3 cut(s) 291, 778, 1729
BseMI GCAATG 3 cut(s) 2304, 2316, 2381
BseMII CTCAG 3 cut(s) 276, 871, 2094
BseNI ACTGG 6 cut(s) 184, 708, 740, 1165, 1234, 1404
BseRI GAGGAG 3 cut(s) 24, 247, 250
BseX3I CGGCCG 1 cut(s) 2342
BseXI GCAGC 3 cut(s) 990, 1531, 1889
BseYI CCCAGC 2 cut(s) 370, 1298
BsgI GTGCAG 3 cut(s) 684, 989, 1896
Bsh1236I CGCG 2 cut(s) 1218, 2226
Bsh1285I CGRYCG 2 cut(s) 427, 2345
BshFI GGCC 9 cut(s) 342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BshNI GGYRCC 3 cut(s) 1673, 1907, 1916
BsiEI CGRYCG 2 cut(s) 427, 2345
BsiHKAI GWGCWC 2 cut(s) 858, 1946
BsiHKCI CYCGRG 2 cut(s) 1259, 1421
BslFI GGGAC 2 cut(s) 1058, 1813
BslI CCNNNNNNNGG 3 cut(s) 291, 778, 1729
BsmAI GTCTC 2 cut(s) 479, 748
BsmFI GGGAC 2 cut(s) 1058, 1813
BsnI GGCC 9 cut(s) 342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BsoBI CYCGRG 2 cut(s) 1259, 1421
Bsp1286I GDGCHC 4 cut(s) 396, 858, 1260, 1946
Bsp13I TCCGGA 1 cut(s) 661
Bsp1407I TGTACA 1 cut(s) 1602
Bsp68I TCGCGA 1 cut(s) 2226
BspACI CCGC 5 cut(s) 467, 1113, 1440, 1587, 2345
BspANI GGCC 9 cut(s) 342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BspCNI CTCAG 3 cut(s) 275, 870, 2095
BspEI TCCGGA 1 cut(s) 661
BspFNI CGCG 2 cut(s) 1218, 2226
BspHI TCATGA 1 cut(s) 1686
BspLI GGNNCC 7 cut(s) 1046, 1627, 1675, 1801, 1802, 1909, 1918
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 3 cut(s) 80, 2342, 2546
BspT107I GGYRCC 3 cut(s) 1673, 1907, 1916
BsrBI CCGCTC 1 cut(s) 1113
BsrDI GCAATG 3 cut(s) 2304, 2316, 2381
BsrFI RCCGGY 2 cut(s) 761, 2085
BsrGI TGTACA 1 cut(s) 1602
BsrI ACTGG 6 cut(s) 184, 708, 740, 1165, 1234, 1404
BssAI RCCGGY 2 cut(s) 761, 2085
BssECI CCNNGG 5 cut(s) 960, 1040, 1844, 1977, 2494
BssNAI GTATAC 3 cut(s) 432, 1135, 1153
BssNI GRCGYC 2 cut(s) 1674, 2089
BssT1I CCWWGG 3 cut(s) 1040, 1844, 1977
Bst1107I GTATAC 3 cut(s) 432, 1135, 1153
Bst2UI CCWGG 4 cut(s) 803, 961, 995, 2198
Bst4CI ACNGT 9 cut(s) 28, 131, 198, 294, 436, 1503, 1568, 1931, 2434
Bst6I CTCTTC 1 cut(s) 413
BstACI GRCGYC 2 cut(s) 1674, 2089
BstAPI GCANNNNNTGC 1 cut(s) 1888
BstAUI TGTACA 1 cut(s) 1602
BstBAI YACGTR 4 cut(s) 315, 904, 1600, 1796
BstC8I GCNNGC 5 cut(s) 268, 340, 1377, 2163, 2288
BstDEI CTNAG 4 cut(s) 262, 857, 1805, 2103
BstDSI CCRYGG 1 cut(s) 2494
BstF5I GGATG 7 cut(s) 60, 475, 811, 2210, 2329, 2359, 2511
BstFNI CGCG 2 cut(s) 1218, 2226
BstH2I RGCGCY 2 cut(s) 789, 1677
BstHHI GCGC 4 cut(s) 788, 1676, 1719, 1882
BstMAI GTCTC 2 cut(s) 479, 748
BstMCI CGRYCG 2 cut(s) 427, 2345
BstMWI GCNNNNNNNGC 5 cut(s) 893, 1593, 1888, 2207, 2306
BstNI CCWGG 4 cut(s) 803, 961, 995, 2198
BstNSI RCATGY 1 cut(s) 769
BstSCI CCNGG 5 cut(s) 771, 801, 959, 993, 2196
BstSNI TACGTA 2 cut(s) 315, 904
BstUI CGCG 2 cut(s) 1218, 2226
BstV1I GCAGC 3 cut(s) 990, 1531, 1889
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 1 cut(s) 1263
BstYI RGATCY 1 cut(s) 1263
BstZ17I GTATAC 3 cut(s) 432, 1135, 1153
BstZI CGGCCG 1 cut(s) 2342
BsuI GTATCC 1 cut(s) 1226
BsuRI GGCC 9 cut(s) 342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BtgI CCRYGG 1 cut(s) 2494
BtgZI GCGATG 2 cut(s) 1343, 2241
BtrI CACGTC 1 cut(s) 2116
BtsCI GGATG 7 cut(s) 60, 475, 811, 2210, 2329, 2359, 2511
BtsI GCAGTG 3 cut(s) 333, 696, 876
BtsIMutI CAGTG 5 cut(s) 333, 696, 701, 876, 1526
BtuMI TCGCGA 1 cut(s) 2226
Cac8I GCNNGC 5 cut(s) 268, 340, 1377, 2163, 2288
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 1686
CfoI GCGC 4 cut(s) 788, 1676, 1719, 1882
Cfr10I RCCGGY 2 cut(s) 761, 2085
Cfr13I GGNCC 6 cut(s) 1045, 1163, 1301, 1626, 1800, 2208
CseI GACGC 1 cut(s) 2078
CsiI ACCWGGT 1 cut(s) 993
CspCI CAANNNNNGTGG 4 cut(s) 712, 747, 1618, 1653
CviAII CATG 8 cut(s) 16, 766, 1156, 1679, 1687, 1789, 2320, 2441
DdeI CTNAG 4 cut(s) 262, 857, 1805, 2103
DinI GGCGCC 1 cut(s) 1675
DraI TTTAAA 1 cut(s) 510
DrdI GACNNNNNNGTC 1 cut(s) 2107
DseDI GACNNNNNNGTC 1 cut(s) 2107
EaeI YGGCCR 3 cut(s) 340, 1594, 2342
EagI CGGCCG 1 cut(s) 2342
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 856
EclXI CGGCCG 1 cut(s) 2342
Eco105I TACGTA 2 cut(s) 315, 904
Eco130I CCWWGG 3 cut(s) 1040, 1844, 1977
Eco24I GRGCYC 3 cut(s) 396, 858, 1260
Eco32I GATATC 3 cut(s) 118, 187, 2066
Eco47I GGWCC 2 cut(s) 1045, 1800
Eco52I CGGCCG 1 cut(s) 2342
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 2 cut(s) 441, 2357
Eco72I CACGTG 2 cut(s) 1600, 1796
Eco88I CYCGRG 2 cut(s) 1259, 1421
EcoICRI GAGCTC 1 cut(s) 856
EcoO109I RGGNCCY 1 cut(s) 1800
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 4 cut(s) 801, 959, 993, 2196
EcoRV GATATC 3 cut(s) 118, 187, 2066
EcoT14I CCWWGG 3 cut(s) 1040, 1844, 1977
EcoT38I GRGCYC 3 cut(s) 396, 858, 1260
EgeI GGCGCC 1 cut(s) 1675
EheI GGCGCC 1 cut(s) 1675
ErhI CCWWGG 3 cut(s) 1040, 1844, 1977
FaeI CATG 8 cut(s) 19, 769, 1159, 1682, 1690, 1792, 2323, 2444
FaqI GGGAC 2 cut(s) 1058, 1813
FatI CATG 8 cut(s) 15, 765, 1155, 1678, 1686, 1788, 2319, 2440
FauI CCCGC 1 cut(s) 1580
FauNDI CATATG 1 cut(s) 1371
FbaI TGATCA 3 cut(s) 2239, 2416, 2454
FblI GTMKAC 3 cut(s) 431, 1134, 1152
Fnu4HI GCNGC 4 cut(s) 1004, 1545, 1878, 2345
FokI GGATG 7 cut(s) 47, 482, 818, 2217, 2336, 2366, 2498
FriOI GRGCYC 3 cut(s) 396, 858, 1260
Fsp4HI GCNGC 4 cut(s) 1004, 1545, 1878, 2345
FspBI CTAG 8 cut(s) 267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
GlaI GCGC 4 cut(s) 787, 1675, 1718, 1881
GluI GCNGC 4 cut(s) 1004, 1545, 1878, 2345
GsaI CCCAGC 2 cut(s) 374, 1302
GsuI CTGGAG 2 cut(s) 201, 725
HaeII RGCGCY 2 cut(s) 789, 1677
HaeIII GGCC 9 cut(s) 342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
HgaI GACGC 1 cut(s) 2078
HhaI GCGC 4 cut(s) 788, 1676, 1719, 1882
Hin1I GRCGYC 2 cut(s) 1674, 2089
Hin1II CATG 8 cut(s) 19, 769, 1159, 1682, 1690, 1792, 2323, 2444
Hin6I GCGC 4 cut(s) 786, 1674, 1717, 1880
HinP1I GCGC 4 cut(s) 786, 1674, 1717, 1880
HincII GTYRAC 5 cut(s) 220, 1365, 2093, 2251, 2523
HindII GTYRAC 5 cut(s) 220, 1365, 2093, 2251, 2523
HinfI GANTC 9 cut(s) 487, 720, 822, 977, 1022, 1126, 1220, 1463, 2507
HpaI GTTAAC 1 cut(s) 220
HphI GGTGA 9 cut(s) 95, 535, 624, 949, 1189, 1775, 1919, 2059, 2279
Hpy188I TCNGA 9 cut(s) 1225, 1507, 1745, 1863, 1987, 2063, 2113, 2244, 2542
Hpy188III TCNNGA 8 cut(s) 662, 1249, 1261, 1687, 1699, 1710, 2069, 2225
Hpy99I CGWCG 5 cut(s) 32, 731, 794, 1100, 2117
HpyCH4III ACNGT 9 cut(s) 28, 131, 198, 294, 436, 1503, 1568, 1931, 2434
HpyCH4IV ACGT 8 cut(s) 314, 726, 903, 1098, 1599, 1795, 1935, 2115
HpyF10VI GCNNNNNNNGC 5 cut(s) 893, 1593, 1888, 2207, 2306
HpyF3I CTNAG 4 cut(s) 262, 857, 1805, 2103
HpySE526I ACGT 8 cut(s) 314, 726, 903, 1098, 1599, 1795, 1935, 2115
Hsp92I GRCGYC 2 cut(s) 1674, 2089
Hsp92II CATG 8 cut(s) 19, 769, 1159, 1682, 1690, 1792, 2323, 2444
HspAI GCGC 4 cut(s) 786, 1674, 1717, 1880
KasI GGCGCC 1 cut(s) 1673
KflI GGGWCCC 1 cut(s) 1800
Kpn2I TCCGGA 1 cut(s) 661
KpnI GGTACC 1 cut(s) 1911
Ksp22I TGATCA 3 cut(s) 2239, 2416, 2454
KspAI GTTAAC 1 cut(s) 220
LmnI GCTCC 2 cut(s) 37, 1110
Lsp1109I GCAGC 3 cut(s) 990, 1531, 1889
LweI GCATC 6 cut(s) 460, 1231, 1320, 1692, 2273, 2379
MabI ACCWGGT 1 cut(s) 993
MaeI CTAG 8 cut(s) 267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
MaeII ACGT 8 cut(s) 314, 726, 903, 1098, 1599, 1795, 1935, 2115
MaeIII GTNAC 7 cut(s) 302, 415, 904, 1195, 1808, 1931, 2167
MbiI CCGCTC 1 cut(s) 1113
MboII GAAGA 7 cut(s) 47, 125, 400, 767, 831, 1258, 1832
MfeI CAATTG 3 cut(s) 172, 1284, 2096
MflI RGATCY 1 cut(s) 1263
MhlI GDGCHC 4 cut(s) 396, 858, 1260, 1946
MlsI TGGCCA 2 cut(s) 342, 1596
MluNI TGGCCA 2 cut(s) 342, 1596
Mly113I GGCGCC 1 cut(s) 1674
MlyI GAGTC 5 cut(s) 481, 971, 1031, 1135, 1457
MmeI TCCRAC 2 cut(s) 2136, 2539
Mox20I TGGCCA 2 cut(s) 342, 1596
MroI TCCGGA 1 cut(s) 661
MscI TGGCCA 2 cut(s) 342, 1596
MseI TTAA 5 cut(s) 219, 509, 812, 1275, 2181
MslI CAYNNNNRTG 5 cut(s) 107, 764, 1617, 2045, 2309
Msp20I TGGCCA 2 cut(s) 342, 1596
MspA1I CMGCKG 1 cut(s) 2165
MspR9I CCNGG 5 cut(s) 773, 803, 961, 995, 2198
MunI CAATTG 3 cut(s) 172, 1284, 2096
MvaI CCWGG 4 cut(s) 803, 961, 995, 2198
MvnI CGCG 2 cut(s) 1218, 2226
MwoI GCNNNNNNNGC 5 cut(s) 893, 1593, 1888, 2207, 2306
NarI GGCGCC 1 cut(s) 1674
NciI CCSGG 1 cut(s) 773
NdeI CATATG 1 cut(s) 1371
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 8 cut(s) 19, 769, 1159, 1682, 1690, 1792, 2323, 2444
NlaIV GGNNCC 7 cut(s) 1046, 1627, 1675, 1801, 1802, 1909, 1918
NmuCI GTSAC 5 cut(s) 415, 1195, 1808, 1931, 2167
NruI TCGCGA 1 cut(s) 2226
NspI RCATGY 1 cut(s) 769
OliI CACNNNNGTG 2 cut(s) 107, 2045
PaeR7I CTCGAG 1 cut(s) 1259
PagI TCATGA 1 cut(s) 1686
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PfeI GAWTC 4 cut(s) 720, 822, 1220, 2507
PflMI CCANNNNNTGG 1 cut(s) 1729
PkrI GCNGC 4 cut(s) 1005, 1546, 1879, 2346
PleI GAGTC 5 cut(s) 481, 971, 1030, 1134, 1457
PluTI GGCGCC 1 cut(s) 1677
PmaCI CACGTG 2 cut(s) 1600, 1796
PmlI CACGTG 2 cut(s) 1600, 1796
PpsI GAGTC 5 cut(s) 481, 971, 1030, 1134, 1457
Ppu21I YACGTR 4 cut(s) 315, 904, 1600, 1796
PpuMI RGGWCCY 1 cut(s) 1800
Psp124BI GAGCTC 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 1800
Psp6I CCWGG 4 cut(s) 801, 959, 993, 2196
PspCI CACGTG 2 cut(s) 1600, 1796
PspFI CCCAGC 2 cut(s) 370, 1298
PspGI CCWGG 4 cut(s) 801, 959, 993, 2196
PspN4I GGNNCC 7 cut(s) 1046, 1627, 1675, 1801, 1802, 1909, 1918
PspPI GGNCC 6 cut(s) 1045, 1163, 1301, 1626, 1800, 2208
PspPPI RGGWCCY 1 cut(s) 1800
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 1 cut(s) 1263
PvuII CAGCTG 1 cut(s) 2165
RruI TCGCGA 1 cut(s) 2226
RseI CAYNNNNRTG 5 cut(s) 107, 764, 1617, 2045, 2309
SacI GAGCTC 1 cut(s) 858
SaqAI TTAA 5 cut(s) 219, 509, 812, 1275, 2181
SatI GCNGC 4 cut(s) 1004, 1545, 1878, 2345
Sau96I GGNCC 6 cut(s) 1045, 1163, 1301, 1626, 1800, 2208
SchI GAGTC 5 cut(s) 481, 971, 1031, 1135, 1457
ScrFI CCNGG 5 cut(s) 773, 803, 961, 995, 2198
SduI GDGCHC 4 cut(s) 396, 858, 1260, 1946
SexAI ACCWGGT 1 cut(s) 993
SfaNI GCATC 6 cut(s) 460, 1231, 1320, 1692, 2273, 2379
SfoI GGCGCC 1 cut(s) 1675
Sfr274I CTCGAG 1 cut(s) 1259
SinI GGWCC 2 cut(s) 1045, 1800
SlaI CTCGAG 1 cut(s) 1259
SmiMI CAYNNNNRTG 5 cut(s) 107, 764, 1617, 2045, 2309
SmlI CTYRAG 1 cut(s) 1259
SmoI CTYRAG 1 cut(s) 1259
SnaBI TACGTA 2 cut(s) 315, 904
SsiI CCGC 5 cut(s) 467, 1113, 1440, 1587, 2345
SspDI GGCGCC 1 cut(s) 1673
SspI AATATT 1 cut(s) 514
SspMI CTAG 8 cut(s) 267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 5 cut(s) 771, 801, 959, 993, 2196
StyI CCWWGG 3 cut(s) 1040, 1844, 1977
TaaI ACNGT 9 cut(s) 28, 131, 198, 294, 436, 1503, 1568, 1931, 2434
TaiI ACGT 8 cut(s) 317, 729, 906, 1101, 1602, 1798, 1938, 2118
TaqI TCGA 7 cut(s) 390, 718, 1020, 1260, 1560, 2188, 2281
TaqII GACCGA 3 cut(s) 413, 903, 1062
TatI WGTACW 2 cut(s) 1602, 2118
TauI GCSGC 1 cut(s) 2347
TfiI GAWTC 4 cut(s) 720, 822, 1220, 2507
Tru1I TTAA 5 cut(s) 219, 509, 812, 1275, 2181
Tru9I TTAA 5 cut(s) 219, 509, 812, 1275, 2181
TscAI CASTG 5 cut(s) 340, 703, 708, 876, 1533
TseFI GTSAC 5 cut(s) 415, 1195, 1808, 1931, 2167
TseI GCWGC 3 cut(s) 1003, 1544, 1877
Tsp45I GTSAC 5 cut(s) 415, 1195, 1808, 1931, 2167
TspDTI ATGAA 7 cut(s) 32, 340, 537, 768, 1675, 2439, 2481
TspGWI ACGGA 2 cut(s) 606, 1547
TspRI CASTG 5 cut(s) 340, 703, 708, 876, 1533
Van91I CCANNNNNTGG 1 cut(s) 1729
VpaK11BI GGWCC 2 cut(s) 1045, 1800
XapI RAATTY 4 cut(s) 308, 500, 1555, 2257
XceI RCATGY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 1842
XhoI CTCGAG 1 cut(s) 1259
XmaJI CCTAGG 1 cut(s) 1040
XmiI GTMKAC 3 cut(s) 431, 1134, 1152
XspI CTAG 8 cut(s) 267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.