Rh3AG048000

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000056
Physical Location & Seq
Forward (+)
3366230 .. 3366879
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG048000.1

Sequence Viewer

Length: 624 bp
ATGGGTGTCCCAGACAATGAGCAGCCAGCTGTTCTTCGAAAATTACTTAAGCTGGCTAAAGTGGCCGTTCCCGGGGTGCCTATTGTGGTAACCATAGTGGACGTGACTCTGCACTTAGCGCCTTCTACCGCGGTGATGGTGGACTTATTTCGCTTTATAACAAGTTATGGTGGCATCAATTATCAGATGATCATCGATAGCGTTGCATGGGAATACATGGAAACATATGGATGGCAAATCAAGTGTATTCCTTCAGCTAAGTCATCCATTGAGAGATTAGAAAAGGTGAGACTTGATAGTTTGGAAGAAGCGTCGCCATGTGTTATTTGTATGGAGGACCTTGATCACTTCGATGCTGATGCACAGCAAGAAGAAAGAGGGATTGACCATGATCATCAGAACATTACTCGCTTGCCTTGCTCACACCTTTACCATAGAGATTGTGCTGTCCAGTGGCTTGAGATAAATCACTTTTGTCCCTTGTGCCATTACCGAATGCCAGTGGAGGAAGCGCCAGCTGCGAAAGCACGTACTGTGGAAGCCGGTGAGCTACCAAAACCCTCATGGAAAGATCATTGGCGCCTGCTGCTCATGGTGTCACATCGTATCATTAAGGAACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

207

Amino Acids

23.7

Weight (kDa)

5.78

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 107 - 162 5e-06 RING-H2 zinc finger domain
zf-RING_2 PF13639 131 - 162 1.8e-08 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 76, 579
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 129, 131
AclI AACGTT 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 580
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 1 cut(s) 72
AflII CTTAAG 1 cut(s) 47
AjiI CACGTC 1 cut(s) 103
AluBI AGCT 5 cut(s) 29, 52, 257, 518, 550
AluI AGCT 5 cut(s) 29, 52, 257, 518, 550
Alw26I GTCTC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 22, 518, 586
AspLEI GCGC 3 cut(s) 121, 514, 582
AspS9I GGNCC 1 cut(s) 337
AsuC2I CCSGG 2 cut(s) 72, 73
AsuHPI GGTGA 3 cut(s) 145, 298, 557
AsuII TTCGAA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 337
BanI GGYRCC 2 cut(s) 76, 579
BbvI GCAGC 3 cut(s) 34, 505, 573
BccI CCATC 2 cut(s) 130, 225
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 4 cut(s) 185, 219, 341, 375
BclI TGATCA 3 cut(s) 189, 343, 391
BcnI CCSGG 2 cut(s) 72, 73
BcoDI GTCTC 1 cut(s) 283
BfoI RGCGCY 3 cut(s) 122, 515, 583
BfrI CTTAAG 1 cut(s) 47
BisI GCNGC 3 cut(s) 23, 519, 587
BlsI GCNGC 3 cut(s) 24, 520, 588
Bme1390I CCNGG 2 cut(s) 72, 73
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 2 cut(s) 78, 581
BmrFI CCNGG 2 cut(s) 72, 73
BmsI GCATC 3 cut(s) 183, 343, 349
Bpu14I TTCGAA 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 2 cut(s) 72, 73
Bsa29I ATCGAT 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 580
BsaJI CCNNGG 3 cut(s) 71, 72, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 2 cut(s) 451, 500
Bse8I GATNNNNATC 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 3 cut(s) 71, 72, 129
BseGI GGATG 2 cut(s) 236, 263
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 451, 500
BseXI GCAGC 3 cut(s) 34, 505, 573
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 2 cut(s) 76, 579
BshVI ATCGAT 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 72, 543
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 462
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 37
Bsp143I GATC 4 cut(s) 189, 343, 391, 571
BspACI CCGC 2 cut(s) 129, 131
BspANI GGCC 1 cut(s) 65
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 78, 581
BspT104I TTCGAA 1 cut(s) 37
BspT107I GGYRCC 2 cut(s) 76, 579
BspTI CTTAAG 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 2 cut(s) 451, 500
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 3 cut(s) 71, 72, 129
BssMI GATC 4 cut(s) 189, 343, 391, 571
BssNI GRCGYC 1 cut(s) 580
Bst4CI ACNGT 1 cut(s) 535
BstACI GRCGYC 1 cut(s) 580
BstAFI CTTAAG 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 37
BstC8I GCNNGC 5 cut(s) 27, 54, 413, 516, 584
BstDEI CTNAG 2 cut(s) 115, 258
BstDSI CCRYGG 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 2 cut(s) 236, 263
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 3 cut(s) 122, 515, 583
BstHHI GCGC 3 cut(s) 121, 514, 582
BstKTI GATC 4 cut(s) 192, 346, 394, 574
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 4 cut(s) 189, 343, 391, 571
BstMWI GCNNNNNNNGC 6 cut(s) 62, 118, 417, 518, 524, 586
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 70, 71
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 34, 505, 573
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 1 cut(s) 65
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 236, 263
BtsIMutI CAGTG 2 cut(s) 458, 507
Cac8I GCNNGC 5 cut(s) 27, 54, 413, 516, 584
CfoI GCGC 3 cut(s) 121, 514, 582
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 337
Cfr42I CCGCGG 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 531
CviAII CATG 6 cut(s) 207, 217, 318, 389, 564, 592
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 2 cut(s) 115, 258
DinI GGCGCC 1 cut(s) 581
DpnI GATC 4 cut(s) 191, 345, 393, 573
DpnII GATC 4 cut(s) 189, 343, 391, 571
EaeI YGGCCR 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 581
EheI GGCGCC 1 cut(s) 581
FaeI CATG 6 cut(s) 210, 220, 321, 392, 567, 595
FaqI GGGAC 1 cut(s) 462
FatI CATG 6 cut(s) 206, 216, 317, 388, 563, 591
FauNDI CATATG 1 cut(s) 226
FbaI TGATCA 3 cut(s) 189, 343, 391
Fnu4HI GCNGC 3 cut(s) 23, 519, 587
FokI GGATG 2 cut(s) 243, 250
Fsp4HI GCNGC 3 cut(s) 23, 519, 587
GlaI GCGC 3 cut(s) 120, 513, 581
GluI GCNGC 3 cut(s) 23, 519, 587
HaeII RGCGCY 3 cut(s) 122, 515, 583
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 72, 543
HgaI GACGC 1 cut(s) 300
HhaI GCGC 3 cut(s) 121, 514, 582
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 6 cut(s) 210, 220, 321, 392, 567, 595
Hin6I GCGC 3 cut(s) 119, 512, 580
HinP1I GCGC 3 cut(s) 119, 512, 580
HinfI GANTC 1 cut(s) 106
HpaII CCGG 2 cut(s) 72, 543
HphI GGTGA 3 cut(s) 145, 298, 557
Hpy166II GTNNAC 2 cut(s) 100, 142
Hpy188I TCNGA 2 cut(s) 186, 399
Hpy8I GTNNAC 2 cut(s) 100, 142
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 132, 261
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 3 cut(s) 102, 529, 619
HpyCH4V TGCA 3 cut(s) 112, 206, 362
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 118, 417, 518, 524, 586
HpyF3I CTNAG 2 cut(s) 115, 258
HpySE526I ACGT 3 cut(s) 102, 529, 619
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 6 cut(s) 210, 220, 321, 392, 567, 595
HspAI GCGC 3 cut(s) 119, 512, 580
KasI GGCGCC 1 cut(s) 579
Ksp22I TGATCA 3 cut(s) 189, 343, 391
KspI CCGCGG 1 cut(s) 132
Kzo9I GATC 4 cut(s) 189, 343, 391, 571
LpnPI CCDG 9 cut(s) 24, 38, 39, 85, 464, 513, 528, 556, 596
Lsp1109I GCAGC 3 cut(s) 34, 505, 573
LweI GCATC 3 cut(s) 183, 343, 349
MaeII ACGT 3 cut(s) 102, 529, 619
MaeIII GTNAC 3 cut(s) 88, 103, 597
MalI GATC 4 cut(s) 191, 345, 393, 573
MboI GATC 4 cut(s) 189, 343, 391, 571
MboII GAAGA 3 cut(s) 26, 317, 383
MluCI AATT 2 cut(s) 41, 178
Mly113I GGCGCC 1 cut(s) 580
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 4 cut(s) 328, 371, 499, 571
MseI TTAA 3 cut(s) 48, 612, 622
MslI CAYNNNNRTG 2 cut(s) 229, 351
MspA1I CMGCKG 3 cut(s) 29, 131, 518
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 2 cut(s) 72, 543
MspR9I CCNGG 2 cut(s) 72, 73
Mva1269I GAATGC 1 cut(s) 501
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 6 cut(s) 62, 118, 417, 518, 524, 586
NarI GGCGCC 1 cut(s) 580
NciI CCSGG 2 cut(s) 72, 73
NdeI CATATG 1 cut(s) 226
NdeII GATC 4 cut(s) 189, 343, 391, 571
NlaIII CATG 6 cut(s) 210, 220, 321, 392, 567, 595
NlaIV GGNNCC 2 cut(s) 78, 581
NmuCI GTSAC 2 cut(s) 103, 597
NspV TTCGAA 1 cut(s) 37
PctI GAATGC 1 cut(s) 501
PkrI GCNGC 3 cut(s) 24, 520, 588
PleI GAGTC 1 cut(s) 100
PluTI GGCGCC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 337
PsiI TTATAA 1 cut(s) 158
Psp1406I AACGTT 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 337
PspEI GGTNACC 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 78, 581
PspPI GGNCC 1 cut(s) 337
PspPPI RGGWCCY 1 cut(s) 337
PvuII CAGCTG 2 cut(s) 29, 518
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 2 cut(s) 229, 351
SacII CCGCGG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 48, 612, 622
SatI GCNGC 3 cut(s) 23, 519, 587
Sau3AI GATC 4 cut(s) 189, 343, 391, 571
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 72, 73
SfaNI GCATC 3 cut(s) 183, 343, 349
SfoI GGCGCC 1 cut(s) 581
Sfr303I CCGCGG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 132
SinI GGWCC 1 cut(s) 337
SmaI CCCGGG 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 229, 351
SmlI CTYRAG 2 cut(s) 47, 458
SmoI CTYRAG 2 cut(s) 47, 458
Sse9I AATT 2 cut(s) 41, 178
SsiI CCGC 2 cut(s) 129, 131
SspDI GGCGCC 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 70, 71
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 3 cut(s) 105, 532, 622
TaqI TCGA 3 cut(s) 37, 195, 351
TasI AATT 2 cut(s) 41, 178
Tru1I TTAA 3 cut(s) 48, 612, 622
Tru9I TTAA 3 cut(s) 48, 612, 622
TscAI CASTG 2 cut(s) 458, 507
TseFI GTSAC 2 cut(s) 103, 597
TseI GCWGC 3 cut(s) 22, 518, 586
Tsp45I GTSAC 2 cut(s) 103, 597
TspMI CCCGGG 1 cut(s) 71
TspRI CASTG 2 cut(s) 458, 507
Vha464I CTTAAG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XmaI CCCGGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.