Rorug02G0384900

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Reverse (-)
49125738 .. 49130572
4835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0384900.1

Sequence Viewer

Length: 1614 bp
ATGTCATCCGGGTCGGGTTCTCTGATGTGGTTCCGCAAGGGCCTGAGGATCCACGACAACCCTGCTCTCGAGCACGCCTCCAAGGCCTCCAATTTCCTCTACCCGGTCTTCGTCATCGACCCGCACTACATGAAGCCCGACCCGACCGCACCCTCCTCCGGGTCCTCCAAGGCCGGCCTGAACCGGATCCGGTTCCTGCTCCAGAGTCTGGTCGATTTGGATTTGAGCCTCAAGAAGCTCGGGTCCAGATTGTTGGTGCTTAAAGGCGACCCCAGCGAGGTCATCGTTCGTTGCCTTAAGGAGTGGGATGTGAAAAAGCTTTGCTTTGAGTATGATACTGAACCATATTACCAAGCTCTAGATGTTAAAGTCAAGGGTTTCGCATCCGCGGCTGGGATTGAGGTTTTCAGTCCTGTAAGTCATACGCTGTTCAATCCTGCGGAGATTATACAGAAGAATGGGGGAAGGCCACCTTTGAGTTATCAATCATTTGTAAAGCTTGCTGGGGAACCCTCGTGGATATCCACGCCTCTTGCTATGACGCTTTCTTCACTTCCTCCGGTTGGGAATGTTGCGAATTGTGAGGTTTCAGAAGTTCCGACTGTTGAAGAACTTGGTTATGAAGAGGCTCAACAGGATGAATTTTCTCCTTTTAGAGGTGGTGAGTCAGAAGCCTTGAAGAGGTTAAGACAATCAATCGAAAAAAAGGAGTGGGTGGCAAACTTCGAGAAACCTAAGGGTGATCCATCTGCATTTCTAAAGCCAGCAACAACTGTTTTATCACCTTATTTGAAATTTGGTTGTCTCTCTTCTAGATACTTTTACACATGCCTTCGAGATGTACAGAAAAATGTCAAAAGGCATACATTACCCCCAGTATCTCTTGCTGGACAGTTATTATGGCGAGAGTTTTTCTACACAGTGGCATTTGGCACTCCTAATTTTGACCAGATGCGGGGAAACAAAATATGCAAGCAGATACCTTGGAATGATGATGATAAATTGCTGGCAGCATGGAGGGAGGCTAGAACAGGATACCCTTGGATCGATGCTATCATGACCCAGCTCCGCAAGTGGGGATGGATGCATCATCTAGCACGACATTCTGTTGCATGTTTTTTAACTCGTGGTGATTTGTTTGTTCACTGGGAAAAAGGGCGTGATGTTTTTGAGAGGCTGCTGATTGATTCAGATTGGGCAATCAATAATGGAAACTGGCTATGGCTATCATGCTCATCATTTTTCTACCAGTATAACCGTATCTATTCCCCAATCTCGTTTGGAAAGAAGTATGACCCAAATGGTGATTACATTAGACAGTTTCTCCCTGTACTTAAAGATATGCCAAAGGAGTACATTTATGAGCCATGGACAGCTCCTCTGAGCATTCAGAACAAAGCAAAGTGCATAATTGGAAGAGATTATCCAAAGCCAGTGGTTTATCATGATTCTGCAAGCAAAGAGTGCAAGAAGAAAATGGCTGAAGCATATGCATTGAACAAGAAGTTGACTGGCTTGGTGAGCGAAGCAGATCTAATAAACTTGCGAAGAAAACTGGAGGAAGACCAAAAGCCAGAGGTAAAGAACAAACGGCAAAGAAAGCTGACGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

537

Amino Acids

61.42

Weight (kDa)

9.14

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 7 - 167 6.6e-43 DNA photolyase
FAD_binding_7 PF03441 297 - 494 1.8e-75 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 208
AccII CGCG 1 cut(s) 389
AciI CCGC 8 cut(s) 34, 122, 147, 387, 389, 440, 955, 1069
AclWI GGATC 6 cut(s) 43, 56, 181, 194, 737, 1052
AcsI RAATTY 2 cut(s) 641, 794
AcuI CTGAAG 1 cut(s) 1503
AfaI GTAC 3 cut(s) 843, 1332, 1355
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 5 cut(s) 433, 608, 679, 793, 1498
AluBI AGCT 7 cut(s) 238, 319, 356, 499, 1066, 1376, 1603
AluI AGCT 7 cut(s) 238, 319, 356, 499, 1066, 1376, 1603
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 6 cut(s) 43, 56, 181, 194, 737, 1052
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 2 cut(s) 68, 239
AoxI GGCC 5 cut(s) 40, 84, 171, 175, 467
ApeKI GCWGC 2 cut(s) 1010, 1177
ApoI RAATTY 2 cut(s) 641, 794
AspS9I GGNCC 3 cut(s) 40, 162, 243
AsuC2I CCSGG 3 cut(s) 10, 104, 160
AsuHPI GGTGA 6 cut(s) 674, 752, 774, 1142, 1316, 1531
AvaI CYCGRG 2 cut(s) 68, 239
AvaII GGWCC 2 cut(s) 162, 243
AxyI CCTNAGG 2 cut(s) 44, 735
BamHI GGATCC 2 cut(s) 48, 186
BauI CACGAG 2 cut(s) 514, 1125
BbsI GAAGAC 2 cut(s) 100, 1569
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 1022, 1164
BccI CCATC 2 cut(s) 754, 1074
BceAI ACGGC 1 cut(s) 1607
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciVI GTATCC 1 cut(s) 1028
BcnI CCSGG 3 cut(s) 10, 104, 160
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 4 cut(s) 359, 813, 1026, 1094
BfrI CTTAAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 1028
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 1 cut(s) 1531
BisI GCNGC 3 cut(s) 390, 1011, 1178
BlsI GCNGC 3 cut(s) 391, 1012, 1179
Bme1390I CCNGG 3 cut(s) 10, 104, 160
Bme18I GGWCC 2 cut(s) 162, 243
BmeT110I CYCGRG 2 cut(s) 68, 239
BmgT120I GGNCC 3 cut(s) 40, 162, 243
BmiI GGNNCC 7 cut(s) 32, 50, 163, 188, 194, 244, 510
BmrFI CCNGG 3 cut(s) 10, 104, 160
BmrI ACTGGG 2 cut(s) 869, 1156
BmsI GCATC 5 cut(s) 392, 942, 1039, 1074, 1096
BmuI ACTGGG 2 cut(s) 869, 1156
BpiI GAAGAC 2 cut(s) 100, 1569
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 2 cut(s) 185, 1577
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 3 cut(s) 10, 104, 160
Bsa29I ATCGAT 1 cut(s) 1047
BsaJI CCNNGG 6 cut(s) 81, 168, 387, 983, 1040, 1367
BsaWI WCCGGW 3 cut(s) 183, 189, 559
BsaXI ACNNNNNCTCC 2 cut(s) 1308, 1338
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 7 cut(s) 875, 1151, 1220, 1249, 1433, 1516, 1560
Bse21I CCTNAGG 2 cut(s) 44, 735
BseCI ATCGAT 1 cut(s) 1047
BseDI CCNNGG 6 cut(s) 81, 168, 387, 983, 1040, 1367
BseGI GGATG 6 cut(s) 5, 313, 383, 643, 1085, 1089
BseMII CTCAG 2 cut(s) 35, 1373
BseNI ACTGG 7 cut(s) 875, 1151, 1220, 1249, 1433, 1516, 1560
BseRI GAGGAG 2 cut(s) 145, 1368
BseXI GCAGC 2 cut(s) 1022, 1164
BseYI CCCAGC 4 cut(s) 272, 392, 503, 1062
Bsh1236I CGCG 1 cut(s) 389
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 5 cut(s) 42, 86, 173, 177, 469
BshVI ATCGAT 1 cut(s) 1047
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 2 cut(s) 68, 239
BsiSI CCGG 7 cut(s) 9, 104, 159, 174, 184, 190, 560
BsmAI GTCTC 1 cut(s) 809
BsmI GAATGC 1 cut(s) 1386
BsnI GGCC 5 cut(s) 42, 86, 173, 177, 469
BsoBI CYCGRG 2 cut(s) 68, 239
Bsp1286I GDGCHC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 841
Bsp143I GATC 5 cut(s) 48, 186, 742, 1044, 1531
Bsp19I CCATGG 1 cut(s) 1367
BspACI CCGC 8 cut(s) 34, 122, 147, 387, 389, 440, 955, 1069
BspANI GGCC 5 cut(s) 42, 86, 173, 177, 469
BspCNI CTCAG 2 cut(s) 36, 1374
BspDI ATCGAT 1 cut(s) 1047
BspFNI CGCG 1 cut(s) 389
BspHI TCATGA 2 cut(s) 1056, 1444
BspLI GGNNCC 7 cut(s) 32, 50, 163, 188, 194, 244, 510
BspPI GGATC 6 cut(s) 43, 56, 181, 194, 737, 1052
BspTI CTTAAG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 7 cut(s) 875, 1151, 1220, 1249, 1433, 1516, 1560
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 6 cut(s) 81, 168, 387, 983, 1040, 1367
BssMI GATC 5 cut(s) 48, 186, 742, 1044, 1531
BssSI CACGAG 2 cut(s) 514, 1125
BssT1I CCWWGG 5 cut(s) 81, 168, 983, 1040, 1367
Bst2BI CACGAG 2 cut(s) 514, 1125
Bst4CI ACNGT 6 cut(s) 604, 775, 894, 922, 1259, 1320
Bst6I CTCTTC 4 cut(s) 618, 674, 814, 1411
BstAFI CTTAAG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 1464
BstAUI TGTACA 1 cut(s) 841
BstC8I GCNNGC 7 cut(s) 75, 175, 501, 765, 974, 1008, 1456
BstDEI CTNAG 3 cut(s) 44, 735, 1382
BstDSI CCRYGG 2 cut(s) 387, 1367
BstENI CCTNNNNNAGG 2 cut(s) 654, 679
BstF5I GGATG 6 cut(s) 5, 313, 383, 643, 1085, 1089
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 5 cut(s) 51, 189, 745, 1047, 1534
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 5 cut(s) 48, 186, 742, 1044, 1531
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 6 cut(s) 83, 273, 389, 1464, 1521, 1600
BstNSI RCATGY 2 cut(s) 831, 1116
BstSCI CCNGG 3 cut(s) 8, 102, 158
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 2 cut(s) 1022, 1164
BstV2I GAAGAC 2 cut(s) 100, 1569
BstX2I RGATCY 3 cut(s) 48, 186, 1531
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 3 cut(s) 48, 186, 1531
Bsu15I ATCGAT 1 cut(s) 1047
Bsu36I CCTNAGG 2 cut(s) 44, 735
BsuI GTATCC 1 cut(s) 1028
BsuRI GGCC 5 cut(s) 42, 86, 173, 177, 469
BsuTUI ATCGAT 1 cut(s) 1047
BtgI CCRYGG 2 cut(s) 387, 1367
BtsCI GGATG 6 cut(s) 5, 313, 383, 643, 1085, 1089
BtsIMutI CAGTG 3 cut(s) 927, 1144, 1440
Cac8I GCNNGC 7 cut(s) 75, 175, 501, 765, 974, 1008, 1456
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 2 cut(s) 1056, 1444
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 40, 162, 243
Cfr42I CCGCGG 1 cut(s) 390
ClaI ATCGAT 1 cut(s) 1047
CseI GACGC 1 cut(s) 550
Csp6I GTAC 3 cut(s) 842, 1331, 1354
CspCI CAANNNNNGTGG 4 cut(s) 514, 549, 1416, 1451
CviAII CATG 8 cut(s) 130, 828, 1014, 1057, 1113, 1230, 1368, 1445
CviQI GTAC 3 cut(s) 842, 1331, 1354
DdeI CTNAG 3 cut(s) 44, 735, 1382
DpnI GATC 5 cut(s) 50, 188, 744, 1046, 1533
DpnII GATC 5 cut(s) 48, 186, 742, 1044, 1531
Eam1104I CTCTTC 4 cut(s) 618, 674, 814, 1411
EarI CTCTTC 4 cut(s) 618, 674, 814, 1411
Eco130I CCWWGG 5 cut(s) 81, 168, 983, 1040, 1367
Eco147I AGGCCT 1 cut(s) 86
Eco32I GATATC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 162, 243
Eco57I CTGAAG 1 cut(s) 1503
Eco81I CCTNAGG 2 cut(s) 44, 735
Eco88I CYCGRG 2 cut(s) 68, 239
EcoNI CCTNNNNNAGG 2 cut(s) 654, 679
EcoO109I RGGNCCY 2 cut(s) 40, 162
EcoRV GATATC 1 cut(s) 522
EcoT14I CCWWGG 5 cut(s) 81, 168, 983, 1040, 1367
EcoT22I ATGCAT 2 cut(s) 1089, 1495
ErhI CCWWGG 5 cut(s) 81, 168, 983, 1040, 1367
FaeI CATG 8 cut(s) 133, 831, 1017, 1060, 1116, 1233, 1371, 1448
FalI AAGNNNNNCTT 4 cut(s) 308, 340, 457, 489
FatI CATG 8 cut(s) 129, 827, 1013, 1056, 1112, 1229, 1367, 1444
FauI CCCGC 2 cut(s) 129, 948
FauNDI CATATG 1 cut(s) 1489
Fnu4HI GCNGC 3 cut(s) 390, 1011, 1178
FokI GGATG 5 cut(s) 320, 370, 650, 1092, 1096
FseI GGCCGGCC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 390, 1011, 1178
FspBI CTAG 4 cut(s) 359, 813, 1026, 1094
GluI GCNGC 3 cut(s) 390, 1011, 1178
GsaI CCCAGC 4 cut(s) 276, 396, 507, 1066
GsuI CTGGAG 2 cut(s) 185, 1577
HaeIII GGCC 5 cut(s) 42, 86, 173, 177, 469
HapII CCGG 7 cut(s) 9, 104, 159, 174, 184, 190, 560
HgaI GACGC 1 cut(s) 550
Hin1II CATG 8 cut(s) 133, 831, 1017, 1060, 1116, 1233, 1371, 1448
HincII GTYRAC 1 cut(s) 1509
HindII GTYRAC 1 cut(s) 1509
HindIII AAGCTT 2 cut(s) 317, 497
HinfI GANTC 4 cut(s) 205, 665, 1187, 1448
HpaII CCGG 7 cut(s) 9, 104, 159, 174, 184, 190, 560
HphI GGTGA 6 cut(s) 674, 752, 774, 1142, 1316, 1531
Hpy166II GTNNAC 2 cut(s) 1144, 1509
Hpy188I TCNGA 7 cut(s) 24, 592, 600, 670, 1192, 1383, 1392
Hpy8I GTNNAC 2 cut(s) 1144, 1509
HpyAV CCTTC 2 cut(s) 459, 842
HpyCH4III ACNGT 6 cut(s) 604, 775, 894, 922, 1259, 1320
HpyCH4V TGCA 8 cut(s) 752, 972, 1087, 1112, 1407, 1454, 1467, 1493
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 273, 389, 1464, 1521, 1600
HpyF3I CTNAG 3 cut(s) 44, 735, 1382
Hsp92II CATG 8 cut(s) 133, 831, 1017, 1060, 1116, 1233, 1371, 1448
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
KspI CCGCGG 1 cut(s) 390
Kzo9I GATC 5 cut(s) 48, 186, 742, 1044, 1531
LmnI GCTCC 3 cut(s) 204, 1071, 1381
Lsp1109I GCAGC 2 cut(s) 1022, 1164
LweI GCATC 5 cut(s) 392, 942, 1039, 1074, 1096
MaeI CTAG 4 cut(s) 359, 813, 1026, 1094
MalI GATC 5 cut(s) 50, 188, 744, 1046, 1533
MboI GATC 5 cut(s) 48, 186, 742, 1044, 1531
MflI RGATCY 3 cut(s) 48, 186, 1531
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 7 cut(s) 91, 577, 641, 794, 940, 1001, 1410
MlyI GAGTC 2 cut(s) 214, 674
MmeI TCCRAC 1 cut(s) 623
Mph1103I ATGCAT 2 cut(s) 1089, 1495
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 6 cut(s) 261, 297, 366, 686, 1121, 1335
MspA1I CMGCKG 1 cut(s) 389
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 7 cut(s) 9, 104, 159, 174, 184, 190, 560
MspR9I CCNGG 3 cut(s) 10, 104, 160
Mva1269I GAATGC 1 cut(s) 1386
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 6 cut(s) 83, 273, 389, 1464, 1521, 1600
NaeI GCCGGC 1 cut(s) 175
NciI CCSGG 3 cut(s) 10, 104, 160
NcoI CCATGG 1 cut(s) 1367
NdeI CATATG 1 cut(s) 1489
NdeII GATC 5 cut(s) 48, 186, 742, 1044, 1531
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 8 cut(s) 133, 831, 1017, 1060, 1116, 1233, 1371, 1448
NlaIV GGNNCC 7 cut(s) 32, 50, 163, 188, 194, 244, 510
NsiI ATGCAT 2 cut(s) 1089, 1495
NspI RCATGY 2 cut(s) 831, 1116
PaeR7I CTCGAG 1 cut(s) 68
PagI TCATGA 2 cut(s) 1056, 1444
PceI AGGCCT 1 cut(s) 86
PctI GAATGC 1 cut(s) 1386
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 1187, 1448
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 3 cut(s) 391, 1012, 1179
PleI GAGTC 2 cut(s) 213, 673
PpsI GAGTC 2 cut(s) 213, 673
PpuMI RGGWCCY 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 162
PspFI CCCAGC 4 cut(s) 272, 392, 503, 1062
PspN4I GGNNCC 7 cut(s) 32, 50, 163, 188, 194, 244, 510
PspPI GGNCC 3 cut(s) 40, 162, 243
PspPPI RGGWCCY 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 3 cut(s) 48, 186, 1531
RigI GGCCGGCC 1 cut(s) 177
RsaI GTAC 3 cut(s) 843, 1332, 1355
RsaNI GTAC 3 cut(s) 842, 1331, 1354
SacII CCGCGG 1 cut(s) 390
SaqAI TTAA 6 cut(s) 261, 297, 366, 686, 1121, 1335
SatI GCNGC 3 cut(s) 390, 1011, 1178
Sau3AI GATC 5 cut(s) 48, 186, 742, 1044, 1531
Sau96I GGNCC 3 cut(s) 40, 162, 243
SchI GAGTC 2 cut(s) 214, 674
ScrFI CCNGG 3 cut(s) 10, 104, 160
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 5 cut(s) 392, 942, 1039, 1074, 1096
Sfr274I CTCGAG 1 cut(s) 68
Sfr303I CCGCGG 1 cut(s) 390
SgrBI CCGCGG 1 cut(s) 390
SinI GGWCC 2 cut(s) 162, 243
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 3 cut(s) 68, 230, 296
SmoI CTYRAG 3 cut(s) 68, 230, 296
Sse9I AATT 7 cut(s) 91, 577, 641, 794, 940, 1001, 1410
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 8 cut(s) 34, 122, 147, 387, 389, 440, 955, 1069
SspMI CTAG 4 cut(s) 359, 813, 1026, 1094
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 8, 102, 158
StyI CCWWGG 5 cut(s) 81, 168, 983, 1040, 1367
TaaI ACNGT 6 cut(s) 604, 775, 894, 922, 1259, 1320
TaqI TCGA 7 cut(s) 69, 117, 213, 699, 726, 835, 1047
TasI AATT 7 cut(s) 91, 577, 641, 794, 940, 1001, 1410
TatI WGTACW 3 cut(s) 841, 1330, 1353
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 2 cut(s) 1187, 1448
Tru1I TTAA 6 cut(s) 261, 297, 366, 686, 1121, 1335
Tru9I TTAA 6 cut(s) 261, 297, 366, 686, 1121, 1335
TscAI CASTG 3 cut(s) 927, 1151, 1440
TseI GCWGC 2 cut(s) 1010, 1177
TspDTI ATGAA 3 cut(s) 146, 636, 654
TspRI CASTG 3 cut(s) 927, 1151, 1440
Van91I CCANNNNNTGG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 162, 243
XagI CCTNNNNNAGG 2 cut(s) 654, 679
XapI RAATTY 2 cut(s) 641, 794
XbaI TCTAGA 2 cut(s) 358, 812
XceI RCATGY 2 cut(s) 831, 1116
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 4 cut(s) 359, 813, 1026, 1094
Zsp2I ATGCAT 2 cut(s) 1089, 1495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.