Rorug01G0293900

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000056
Physical Location & Seq
Forward (+)
40977008 .. 40980174
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0293900.1

Sequence Viewer

Length: 1473 bp
ATGACTACCATGGCAACTCCCAGTGTTCATTCTGGCTGCTCCTTCCTCGCCAACAAGTACTTGATTTCCTTTTGTGTATTTGTATGCCTTAATATTCTCTCTTCTTTGGACAAGGGCTTCGCTTTGAGTACTCATCAGACAGATGTTCAACTCAGCTCTCTACTACCAGCATCGACCTGCAGCCCCTCCACCAGAGGTCATGATAAGAAGAAGGCAACACTTAAAGTGGTACACAGGCATGGTCCATGCTCTAAGATGTCCCAGCCTAATCAATACAAGACCACAACTCCAACTCACACTCAGATCCTCCAGCAGGACCAAGCCCGAGTCGACTCAATCCACTCCCGGATGGGTGACAACCTAAGGCAAACCGACGCATCCATCCCCGCCAAGTCCGGCAGCGTAGTGGGCTCGGGAAACTACATTGTGACCGTGGGCTTGGGCTCACCCGCAAAACAACTCTCGCTCATATTCGACACCGGGAGCGACCTCACTTGGACTCAGTGTCAACCTTGTGTCAAGTCATGTTACAAACAGAAGGAGCCCATCTTTGACCCATCCCTCTCCAAATCGTATACCAACATTTCCTGTAATTCACCATTCTGCTCTCAACTCATATCAGCCACAGGTACCAAACCTTATTGCTCAAGCGGCACATCAACTTGCGTATATGACATACAATACAGAGATAAATCCTTCTCCGTGGGATTCTTTGCTAAAGAAAGGTTGACACTAACGTCAACAGACTATTTCGACGGGTTTCTCTTCGGCTGTGGCCAAAACAATCAAGGCCTTTTTGGCGGGTCTGCCGGGTTATTGGGCCTGGGCCGCAACAAAATCCCCCTTGTCGAACAGAGCGCCCAAAAGTACGGCCGCTTCTTCTCCTACTGCCTACCCTCAACTTCCTGTGCCACCGGTTACCTTAGCTTCGGAAAAGGCGGCGGACCCTCCAAAGCCGTCAAGTTCACGCCGCTATCCATTGTATCTGGACGCGGGTACTTAGGCGGGTCCTTTTACGGCCTGGATGTCGTTGGAATCAACGTCGGCGGATGTCAGGTATCGATTCCCGCTTCGGTTTTTTCGTCCTCAGGGACCATCATCGACTCAGGGACGATGATAACGCGGCTTCCGGCAACGGCGTACAGCGCTTTGAGGGATGCATTTAAGCGAGGAATGAAAAGCTACCCGCAAGCTGAGGCGCTTTCGATACTGGACACGTGCTACGACCTGAGCGGGAGCAGCAAGGTGTCGTATCCCAAAATAGCGTTCGCTTTCAGCGGTGGATTGACGTTGGATTTGGATGCGACAGGCATATTTTACGTGGCCAGTGCTTCGCAGGTGTGCTTGGCGTTCGCTGGGAATAGTGATGACAGCGACATTGCCATATTTGGGAATATTCAACAGAAACGGTTGCAGGTGGTGTATGACGTCGCCGGTGGAAAGATTGGATTTGCCCCTGCCGGTTGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

490

Amino Acids

51.98

Weight (kDa)

8.9

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 140 - 487 1.4e-18 Eukaryotic aspartyl protease
TAXi_N PF14543 141 - 312 2.8e-52 Xylanase inhibitor N-terminal
TAXi_C PF14541 339 - 485 6.3e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1327, 1405
AasI GACNNNNNNGTC 1 cut(s) 736
AatII GACGTC 1 cut(s) 1431
Acc36I ACCTGC 3 cut(s) 185, 1327, 1405
Acc65I GGTACC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 629
AccBSI CCGCTC 1 cut(s) 1233
AccI GTMKAC 2 cut(s) 330, 575
AccII CGCG 2 cut(s) 993, 1123
AclWI GGATC 1 cut(s) 298
AcoI YGGCCR 3 cut(s) 775, 871, 1323
AcvI CACGTG 1 cut(s) 1218
AcyI GRCGYC 1 cut(s) 1428
AfaI GTAC 7 cut(s) 59, 130, 231, 631, 869, 998, 1142
AfeI AGCGCT 1 cut(s) 1147
AfiI CCNNNNNNNGG 2 cut(s) 313, 1389
AflIII ACRYGT 1 cut(s) 1215
AgeI ACCGGT 1 cut(s) 914
AgsI TTSAA 2 cut(s) 149, 1400
AhdI GACNNNNNGTC 1 cut(s) 504
AjnI CCWGG 2 cut(s) 822, 1020
AjuI GAANNNNNNNTTGG 2 cut(s) 1250, 1282
AluBI AGCT 4 cut(s) 156, 927, 1182, 1193
AluI AGCT 4 cut(s) 156, 927, 1182, 1193
AlwI GGATC 1 cut(s) 298
Ama87I CYCGRG 2 cut(s) 324, 412
Aor51HI AGCGCT 1 cut(s) 1147
AoxI GGCC 7 cut(s) 775, 790, 820, 826, 871, 1018, 1323
ApeKI GCWGC 4 cut(s) 36, 180, 399, 1239
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 1279, 1311
AsiGI ACCGGT 1 cut(s) 914
Asp718I GGTACC 1 cut(s) 629
AspLEI GCGC 3 cut(s) 860, 1148, 1201
AspS9I GGNCC 7 cut(s) 242, 316, 820, 826, 944, 1008, 1092
AsuC2I CCSGG 3 cut(s) 346, 481, 811
AsuHPI GGTGA 3 cut(s) 365, 438, 588
AvaI CYCGRG 2 cut(s) 324, 412
AvaII GGWCC 5 cut(s) 242, 316, 944, 1008, 1092
AxyI CCTNAGG 2 cut(s) 362, 1087
BalI TGGCCA 2 cut(s) 777, 1325
BanI GGYRCC 1 cut(s) 629
BanII GRGCYC 3 cut(s) 413, 446, 546
BarI GAAGNNNNNNTAC 2 cut(s) 860, 892
BbrPI CACGTG 1 cut(s) 1218
BbvCI CCTCAGC 1 cut(s) 1194
BbvI GCAGC 4 cut(s) 23, 192, 411, 1251
BccI CCATC 5 cut(s) 343, 389, 554, 565, 1103
BceAI ACGGC 4 cut(s) 886, 941, 1033, 1152
BciT130I CCWGG 2 cut(s) 824, 1022
BciVI GTATCC 1 cut(s) 1263
BcnI CCSGG 3 cut(s) 346, 481, 811
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 3 cut(s) 861, 1149, 1202
BfuAI ACCTGC 3 cut(s) 185, 1327, 1405
BfuI GTATCC 1 cut(s) 1263
BglI GCCNNNNNGGC 1 cut(s) 798
BmcAI AGTACT 2 cut(s) 59, 130
Bme1390I CCNGG 5 cut(s) 346, 481, 811, 824, 1022
Bme18I GGWCC 5 cut(s) 242, 316, 944, 1008, 1092
BmeRI GACNNNNNGTC 1 cut(s) 504
BmeT110I CYCGRG 2 cut(s) 324, 412
BmgT120I GGNCC 7 cut(s) 242, 316, 820, 826, 944, 1008, 1092
BmiI GGNNCC 5 cut(s) 543, 631, 946, 1009, 1093
BmrFI CCNGG 5 cut(s) 346, 481, 811, 824, 1022
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 4 cut(s) 179, 386, 1147, 1291
BmuI ACTGGG 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 3 cut(s) 923, 1194, 1229
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 3 cut(s) 346, 481, 811
Bsa29I ATCGAT 1 cut(s) 1061
BsaAI YACGTR 2 cut(s) 1218, 1321
BsaHI GRCGYC 1 cut(s) 1428
BsaJI CCNNGG 4 cut(s) 9, 432, 702, 823
BsaWI WCCGGW 1 cut(s) 914
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 1389
Bse118I RCCGGY 3 cut(s) 914, 1433, 1460
Bse1I ACTGG 3 cut(s) 21, 1215, 1326
Bse21I CCTNAGG 2 cut(s) 362, 1087
Bse3DI GCAATG 1 cut(s) 1377
BseBI CCWGG 2 cut(s) 824, 1022
BseCI ATCGAT 1 cut(s) 1061
BseDI CCNNGG 4 cut(s) 9, 432, 702, 823
BseGI GGATG 8 cut(s) 354, 377, 381, 557, 1030, 1055, 1162, 1306
BseLI CCNNNNNNNGG 2 cut(s) 313, 1389
BseMI GCAATG 1 cut(s) 1377
BseMII CTCAG 7 cut(s) 166, 314, 515, 1101, 1119, 1185, 1220
BseNI ACTGG 3 cut(s) 21, 1215, 1326
BseX3I CGGCCG 1 cut(s) 871
BseXI GCAGC 4 cut(s) 23, 192, 411, 1251
BseYI CCCAGC 2 cut(s) 261, 1355
Bsh1236I CGCG 2 cut(s) 993, 1123
Bsh1285I CGRYCG 1 cut(s) 874
BshFI GGCC 7 cut(s) 777, 792, 822, 828, 873, 1020, 1325
BshNI GGYRCC 1 cut(s) 629
BshTI ACCGGT 1 cut(s) 914
BshVI ATCGAT 1 cut(s) 1061
BsiEI CGRYCG 1 cut(s) 874
BsiHKCI CYCGRG 2 cut(s) 324, 412
BsiSI CCGG 8 cut(s) 346, 396, 480, 810, 915, 1130, 1434, 1461
BslFI GGGAC 3 cut(s) 244, 1105, 1123
BslI CCNNNNNNNGG 2 cut(s) 313, 1389
BsmFI GGGAC 3 cut(s) 244, 1105, 1123
BsnI GGCC 7 cut(s) 777, 792, 822, 828, 873, 1020, 1325
BsoBI CYCGRG 2 cut(s) 324, 412
Bsp1286I GDGCHC 3 cut(s) 413, 446, 546
Bsp143I GATC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 7 cut(s) 777, 792, 822, 828, 873, 1020, 1325
BspCNI CTCAG 7 cut(s) 165, 313, 514, 1100, 1118, 1186, 1221
BspDI ATCGAT 1 cut(s) 1061
BspFNI CGCG 2 cut(s) 993, 1123
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 5 cut(s) 543, 631, 946, 1009, 1093
BspMAI CTGCAG 1 cut(s) 182
BspMI ACCTGC 3 cut(s) 185, 1327, 1405
BspPI GGATC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 629
BsrBI CCGCTC 1 cut(s) 1233
BsrDI GCAATG 1 cut(s) 1377
BsrFI RCCGGY 3 cut(s) 914, 1433, 1460
BsrI ACTGG 3 cut(s) 21, 1215, 1326
BssAI RCCGGY 3 cut(s) 914, 1433, 1460
BssECI CCNNGG 4 cut(s) 9, 432, 702, 823
BssMI GATC 1 cut(s) 303
BssNAI GTATAC 1 cut(s) 576
BssNI GRCGYC 1 cut(s) 1428
BssT1I CCWWGG 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 576
Bst2UI CCWGG 2 cut(s) 824, 1022
Bst4CI ACNGT 2 cut(s) 433, 1410
Bst6I CTCTTC 2 cut(s) 106, 770
BstACI GRCGYC 1 cut(s) 1428
BstBAI YACGTR 2 cut(s) 1218, 1321
BstC8I GCNNGC 1 cut(s) 1191
BstDSI CCRYGG 3 cut(s) 9, 432, 702
BstEII GGTNACC 1 cut(s) 917
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 8 cut(s) 354, 377, 381, 557, 1030, 1055, 1162, 1306
BstFNI CGCG 2 cut(s) 993, 1123
BstH2I RGCGCY 3 cut(s) 861, 1149, 1202
BstHHI GCGC 3 cut(s) 860, 1148, 1201
BstKTI GATC 1 cut(s) 306
BstMBI GATC 1 cut(s) 303
BstMCI CGRYCG 1 cut(s) 874
BstMWI GCNNNNNNNGC 6 cut(s) 408, 651, 798, 828, 1145, 1239
BstNI CCWGG 2 cut(s) 824, 1022
BstPI GGTNACC 1 cut(s) 917
BstSCI CCNGG 5 cut(s) 344, 479, 809, 822, 1020
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 2 cut(s) 993, 1123
BstV1I GCAGC 4 cut(s) 23, 192, 411, 1251
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BstZ17I GTATAC 1 cut(s) 576
BstZI CGGCCG 1 cut(s) 871
Bsu15I ATCGAT 1 cut(s) 1061
Bsu36I CCTNAGG 2 cut(s) 362, 1087
BsuI GTATCC 1 cut(s) 1263
BsuRI GGCC 7 cut(s) 777, 792, 822, 828, 873, 1020, 1325
BsuTUI ATCGAT 1 cut(s) 1061
BtgI CCRYGG 3 cut(s) 9, 432, 702
BtsCI GGATG 8 cut(s) 354, 377, 381, 557, 1030, 1055, 1162, 1306
BtsIMutI CAGTG 3 cut(s) 28, 509, 1333
BveI ACCTGC 3 cut(s) 185, 1327, 1405
Cac8I GCNNGC 1 cut(s) 1191
CciI TCATGA 1 cut(s) 199
CfoI GCGC 3 cut(s) 860, 1148, 1201
Cfr10I RCCGGY 3 cut(s) 914, 1433, 1460
Cfr13I GGNCC 7 cut(s) 242, 316, 820, 826, 944, 1008, 1092
ClaI ATCGAT 1 cut(s) 1061
CseI GACGC 2 cut(s) 383, 999
Csp6I GTAC 7 cut(s) 58, 129, 230, 630, 868, 997, 1141
CspAI ACCGGT 1 cut(s) 914
CviAII CATG 5 cut(s) 10, 200, 239, 246, 525
CviQI GTAC 7 cut(s) 58, 129, 230, 630, 868, 997, 1141
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
DrdI GACNNNNNNGTC 1 cut(s) 736
DriI GACNNNNNGTC 1 cut(s) 504
DseDI GACNNNNNNGTC 1 cut(s) 736
EaeI YGGCCR 3 cut(s) 775, 871, 1323
EagI CGGCCG 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 106, 770
Eam1105I GACNNNNNGTC 1 cut(s) 504
EarI CTCTTC 2 cut(s) 106, 770
EciI GGCGGA 2 cut(s) 957, 1062
EclXI CGGCCG 1 cut(s) 871
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 792
Eco24I GRGCYC 3 cut(s) 413, 446, 546
Eco47I GGWCC 5 cut(s) 242, 316, 944, 1008, 1092
Eco47III AGCGCT 1 cut(s) 1147
Eco52I CGGCCG 1 cut(s) 871
Eco72I CACGTG 1 cut(s) 1218
Eco81I CCTNAGG 2 cut(s) 362, 1087
Eco88I CYCGRG 2 cut(s) 324, 412
Eco91I GGTNACC 1 cut(s) 917
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 1008
EcoO65I GGTNACC 1 cut(s) 917
EcoRII CCWGG 2 cut(s) 822, 1020
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 3 cut(s) 413, 446, 546
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 5 cut(s) 13, 203, 242, 249, 528
FaqI GGGAC 3 cut(s) 244, 1105, 1123
FatI CATG 5 cut(s) 9, 199, 238, 245, 524
FauI CCCGC 8 cut(s) 394, 457, 794, 986, 998, 1075, 1194, 1226
FblI GTMKAC 2 cut(s) 330, 575
FokI GGATG 8 cut(s) 361, 364, 368, 544, 1037, 1062, 1169, 1313
FriOI GRGCYC 3 cut(s) 413, 446, 546
GlaI GCGC 3 cut(s) 859, 1147, 1200
GsaI CCCAGC 2 cut(s) 265, 1359
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 3 cut(s) 861, 1149, 1202
HaeIII GGCC 7 cut(s) 777, 792, 822, 828, 873, 1020, 1325
HapII CCGG 8 cut(s) 346, 396, 480, 810, 915, 1130, 1434, 1461
HgaI GACGC 2 cut(s) 383, 999
HhaI GCGC 3 cut(s) 860, 1148, 1201
Hin1I GRCGYC 1 cut(s) 1428
Hin1II CATG 5 cut(s) 13, 203, 242, 249, 528
Hin6I GCGC 3 cut(s) 858, 1146, 1199
HinP1I GCGC 3 cut(s) 858, 1146, 1199
HincII GTYRAC 4 cut(s) 331, 509, 729, 741
HindII GTYRAC 4 cut(s) 331, 509, 729, 741
HinfI GANTC 7 cut(s) 327, 332, 499, 708, 1035, 1063, 1103
HpaII CCGG 8 cut(s) 346, 396, 480, 810, 915, 1130, 1434, 1461
HphI GGTGA 3 cut(s) 365, 438, 588
Hpy166II GTNNAC 7 cut(s) 232, 331, 509, 576, 729, 741, 966
Hpy188I TCNGA 3 cut(s) 138, 303, 932
Hpy188III TCNNGA 3 cut(s) 200, 414, 987
Hpy8I GTNNAC 7 cut(s) 232, 331, 509, 576, 729, 741, 966
Hpy99I CGWCG 4 cut(s) 377, 758, 1046, 1433
HpyAV CCTTC 4 cut(s) 52, 205, 532, 706
HpyCH4III ACNGT 2 cut(s) 433, 1410
HpyCH4IV ACGT 6 cut(s) 737, 1041, 1217, 1289, 1320, 1428
HpyCH4V TGCA 3 cut(s) 180, 1160, 1414
HpyF10VI GCNNNNNNNGC 6 cut(s) 408, 651, 798, 828, 1145, 1239
HpySE526I ACGT 6 cut(s) 737, 1041, 1217, 1289, 1320, 1428
Hsp92I GRCGYC 1 cut(s) 1428
Hsp92II CATG 5 cut(s) 13, 203, 242, 249, 528
HspAI GCGC 3 cut(s) 858, 1146, 1199
KpnI GGTACC 1 cut(s) 633
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 4 cut(s) 44, 483, 541, 1236
Lsp1109I GCAGC 4 cut(s) 23, 192, 411, 1251
LweI GCATC 4 cut(s) 179, 386, 1147, 1291
MaeII ACGT 6 cut(s) 737, 1041, 1217, 1289, 1320, 1428
MaeIII GTNAC 4 cut(s) 353, 427, 527, 917
MalI GATC 1 cut(s) 305
MbiI CCGCTC 1 cut(s) 1233
MboI GATC 1 cut(s) 303
MboII GAAGA 4 cut(s) 93, 220, 757, 871
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 3 cut(s) 413, 446, 546
MlsI TGGCCA 2 cut(s) 777, 1325
MluCI AATT 1 cut(s) 592
MluNI TGGCCA 2 cut(s) 777, 1325
MlyI GAGTC 4 cut(s) 326, 336, 493, 1097
MmeI TCCRAC 3 cut(s) 314, 1012, 1272
Mox20I TGGCCA 2 cut(s) 777, 1325
Mph1103I ATGCAT 1 cut(s) 1162
MscI TGGCCA 2 cut(s) 777, 1325
MseI TTAA 3 cut(s) 90, 222, 1164
MslI CAYNNNNRTG 1 cut(s) 237
Msp20I TGGCCA 2 cut(s) 777, 1325
MspA1I CMGCKG 1 cut(s) 1278
MspI CCGG 8 cut(s) 346, 396, 480, 810, 915, 1130, 1434, 1461
MspR9I CCNGG 5 cut(s) 346, 481, 811, 824, 1022
MvaI CCWGG 2 cut(s) 824, 1022
MvnI CGCG 2 cut(s) 993, 1123
MwoI GCNNNNNNNGC 6 cut(s) 408, 651, 798, 828, 1145, 1239
NciI CCSGG 3 cut(s) 346, 481, 811
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 303
NlaIII CATG 5 cut(s) 13, 203, 242, 249, 528
NlaIV GGNNCC 5 cut(s) 543, 631, 946, 1009, 1093
NmuCI GTSAC 2 cut(s) 353, 427
NsiI ATGCAT 1 cut(s) 1162
PagI TCATGA 1 cut(s) 199
PaqCI CACCTGC 2 cut(s) 1327, 1405
PceI AGGCCT 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 708, 1035, 1063
PfoI TCCNGGA 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 914
PleI GAGTC 4 cut(s) 326, 335, 493, 1097
PmaCI CACGTG 1 cut(s) 1218
PmlI CACGTG 1 cut(s) 1218
PpsI GAGTC 4 cut(s) 326, 335, 493, 1097
Ppu21I YACGTR 2 cut(s) 1218, 1321
PpuMI RGGWCCY 1 cut(s) 1008
Psp5II RGGWCCY 1 cut(s) 1008
Psp6I CCWGG 2 cut(s) 822, 1020
PspCI CACGTG 1 cut(s) 1218
PspEI GGTNACC 1 cut(s) 917
PspFI CCCAGC 2 cut(s) 261, 1355
PspGI CCWGG 2 cut(s) 822, 1020
PspN4I GGNNCC 5 cut(s) 543, 631, 946, 1009, 1093
PspPI GGNCC 7 cut(s) 242, 316, 820, 826, 944, 1008, 1092
PspPPI RGGWCCY 1 cut(s) 1008
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 7 cut(s) 59, 130, 231, 631, 869, 998, 1142
RsaNI GTAC 7 cut(s) 58, 129, 230, 630, 868, 997, 1141
RseI CAYNNNNRTG 1 cut(s) 237
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 3 cut(s) 90, 222, 1164
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 7 cut(s) 242, 316, 820, 826, 944, 1008, 1092
ScaI AGTACT 2 cut(s) 59, 130
SchI GAGTC 4 cut(s) 326, 336, 493, 1097
ScrFI CCNGG 5 cut(s) 346, 481, 811, 824, 1022
SduI GDGCHC 3 cut(s) 413, 446, 546
SfaNI GCATC 4 cut(s) 179, 386, 1147, 1291
SfcI CTRYAG 1 cut(s) 178
SgrAI CRCCGGYG 1 cut(s) 1433
SinI GGWCC 5 cut(s) 242, 316, 944, 1008, 1092
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 1 cut(s) 592
SseBI AGGCCT 1 cut(s) 792
SspI AATATT 2 cut(s) 94, 1396
StuI AGGCCT 1 cut(s) 792
StyD4I CCNGG 5 cut(s) 344, 479, 809, 822, 1020
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 433, 1410
TaiI ACGT 6 cut(s) 740, 1044, 1220, 1292, 1323, 1431
TaqI TCGA 8 cut(s) 173, 330, 474, 753, 849, 1061, 1101, 1205
TasI AATT 1 cut(s) 592
TatI WGTACW 2 cut(s) 57, 128
TauI GCSGC 6 cut(s) 654, 831, 876, 942, 973, 1126
TfiI GAWTC 3 cut(s) 708, 1035, 1063
Tru1I TTAA 3 cut(s) 90, 222, 1164
Tru9I TTAA 3 cut(s) 90, 222, 1164
TscAI CASTG 3 cut(s) 28, 509, 1333
TseFI GTSAC 2 cut(s) 353, 427
TseI GCWGC 4 cut(s) 36, 180, 399, 1239
Tsp45I GTSAC 2 cut(s) 353, 427
TspDTI ATGAA 2 cut(s) 17, 1190
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 3 cut(s) 28, 509, 1333
VpaK11BI GGWCC 5 cut(s) 242, 316, 944, 1008, 1092
XagI CCTNNNNNAGG 1 cut(s) 311
XmiI GTMKAC 2 cut(s) 330, 575
ZraI GACGTC 1 cut(s) 1429
ZrmI AGTACT 2 cut(s) 59, 130
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.