Rh7DG143000

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000056
Physical Location & Seq
Reverse (-)
12201857 .. 12203606
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG143000.1

Sequence Viewer

Length: 987 bp
ATGTCTACCGAGAGACGTTTTTTCCGGAACACAGTGCACCAATGCGAAAATAGAGCCAGACACCCTGCAATGCCAAGCTACATGGACATGATGATCCTGTTCAGGCACTACAAGGTTACTGCAAACCGCTGGCTTGAAGCTCCAGAACCCATTGTTTATGGCCCCCCAACAGTCATAAGCCGAGCACTGAGTTTTTTCCTTCTCTCTGATGTCAAACGATTCTCGGAAAGGCCAAGGTACTCGGAGTTCATGGCTGAGAAACTCTCCAGTATACGTGTCCCAGAAGATGAGCAAGCAGCTGTTATTGAAAAACTATTTCGGGTGGTTGAAGTGGCTATCCCCGAGAATGCTATTATTGTGTCTGTGTTCGATGTTACTCTCCGCTTCTTGGATAGTACAAGTGATCTTGGCCCTGAGGGTCTGAATCTGATCTTATGGGGACCTACAGTAACTTTTCAGGATGATGATCCAATTATCACTGATAGGGATCCGATGGAATCCATGGAAGCATATGAGCCCAAGCTTATTCCCGCAACTAAATCATTCATTGAGGGCTTGGAGAAAGTGAGATTTGATAGTTTGGAAACTAGTATTAGACAGATGCCATGTGCTATTTGTTGGGAATGCCTTGATCATTTTGCTATAGAACAAGGGACTGATCAGCAGCTGATAATCAATCGCTTGCCCTGCTCACATCTTTATCATGGAGACTGTATTGTCCAGTGGCTTGAGAGGAATCACTTGTGTCCCATGTGCCGATACGCAATCCCTACTGTGGAAGTGGATGTGGAAGTGGAAGCGGGCGATCCATCAAACCCTTCAAGGCCGCGACATTGGGATTTTCTCATGATGTCTGCGGGTGGTATACTAACTACGGCTACTTGCGTTGGTTTGCAGATTATTGAAGCAAAGTTCAAGATGAAAATATCAGATTATCTTATATATGTTGTGCCATTGGTAGGGATGTTTTCTTCGAAGCTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

328

Amino Acids

37.62

Weight (kDa)

5.2

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 203 - 253 2.3e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 224 - 253 8.5e-09 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 716
AccI GTMKAC 3 cut(s) 5, 271, 865
AccII CGCG 1 cut(s) 829
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 6 cut(s) 127, 382, 531, 800, 827, 857
AclWI GGATC 5 cut(s) 88, 461, 482, 495, 800
AfaI GTAC 2 cut(s) 239, 397
AfiI CCNNNNNNNGG 3 cut(s) 388, 775, 959
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 6 cut(s) 137, 308, 329, 822, 905, 916
AhlI ACTAGT 1 cut(s) 587
AluBI AGCT 6 cut(s) 78, 140, 299, 523, 667, 979
AluI AGCT 6 cut(s) 78, 140, 299, 523, 667, 979
Alw21I GWGCWC 2 cut(s) 39, 187
Alw26I GTCTC 2 cut(s) 7, 702
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 5 cut(s) 88, 461, 482, 495, 800
AlwNI CAGNNNCTG 1 cut(s) 667
Ama87I CYCGRG 1 cut(s) 341
Aor13HI TCCGGA 1 cut(s) 24
AoxI GGCC 4 cut(s) 160, 230, 409, 824
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 296, 664
AspS9I GGNCC 3 cut(s) 161, 410, 440
AsuII TTCGAA 1 cut(s) 974
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 440
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 39
BamHI GGATCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 519
Bbv12I GWGCWC 2 cut(s) 39, 187
BbvI GCAGC 2 cut(s) 308, 676
BccI CCATC 2 cut(s) 487, 817
BceAI ACGGC 1 cut(s) 891
BclI TGATCA 2 cut(s) 631, 658
BcoDI GTCTC 2 cut(s) 7, 702
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 2 cut(s) 444, 642
BisI GCNGC 3 cut(s) 297, 665, 827
BlsI GCNGC 3 cut(s) 298, 666, 828
Bme18I GGWCC 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 161, 410, 440
BmiI GGNNCC 3 cut(s) 163, 441, 489
BmsI GCATC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 2 cut(s) 126, 250
Bpu14I TTCGAA 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 749
BsaAI YACGTR 1 cut(s) 275
BsaBI GATNNNNATC 2 cut(s) 465, 486
BsaJI CCNNGG 2 cut(s) 233, 501
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 775, 959
Bse1I ACTGG 2 cut(s) 267, 721
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 2 cut(s) 465, 486
BseAI TCCGGA 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 233, 501
BseGI GGATG 3 cut(s) 466, 790, 969
BseJI GATNNNNATC 2 cut(s) 465, 486
BseLI CCNNNNNNNGG 3 cut(s) 388, 775, 959
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 179, 246, 405
BseNI ACTGG 2 cut(s) 267, 721
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 2 cut(s) 308, 676
Bsh1236I CGCG 1 cut(s) 829
BshFI GGCC 4 cut(s) 162, 232, 411, 826
BsiHKAI GWGCWC 2 cut(s) 39, 187
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 4 cut(s) 263, 453, 667, 732
BslI CCNNNNNNNGG 3 cut(s) 388, 775, 959
BsmAI GTCTC 2 cut(s) 7, 702
BsmBI CGTCTC 1 cut(s) 7
BsmFI GGGAC 4 cut(s) 263, 453, 667, 732
BsmI GAATGC 2 cut(s) 352, 629
BsnI GGCC 4 cut(s) 162, 232, 411, 826
BsoBI CYCGRG 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 974
Bsp1286I GDGCHC 3 cut(s) 39, 187, 519
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 6 cut(s) 127, 382, 531, 800, 827, 857
BspANI GGCC 4 cut(s) 162, 232, 411, 826
BspCNI CTCAG 3 cut(s) 180, 247, 406
BspEI TCCGGA 1 cut(s) 24
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 846
BspLI GGNNCC 3 cut(s) 163, 441, 489
BspPI GGATC 5 cut(s) 88, 461, 482, 495, 800
BspT104I TTCGAA 1 cut(s) 974
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 2 cut(s) 267, 721
BssECI CCNNGG 2 cut(s) 233, 501
BssMI GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
BssNAI GTATAC 2 cut(s) 272, 866
BssT1I CCWWGG 2 cut(s) 233, 501
Bst1107I GTATAC 2 cut(s) 272, 866
Bst4CI ACNGT 5 cut(s) 34, 172, 448, 713, 775
BstBAI YACGTR 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 974
BstC8I GCNNGC 4 cut(s) 131, 294, 683, 802
BstDEI CTNAG 3 cut(s) 188, 255, 414
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 3 cut(s) 466, 790, 969
BstFNI CGCG 1 cut(s) 829
BstKTI GATC 8 cut(s) 96, 406, 432, 469, 490, 634, 661, 808
BstMAI GTCTC 2 cut(s) 7, 702
BstMBI GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
BstMWI GCNNNNNNNGC 1 cut(s) 687
BstSFI CTRYAG 2 cut(s) 444, 642
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 2 cut(s) 308, 676
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BstZ17I GTATAC 2 cut(s) 272, 866
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 4 cut(s) 162, 232, 411, 826
BtgI CCRYGG 1 cut(s) 501
BtsCI GGATG 3 cut(s) 466, 790, 969
BtsIMutI CAGTG 4 cut(s) 39, 185, 477, 728
Cac8I GCNNGC 4 cut(s) 131, 294, 683, 802
CaiI CAGNNNCTG 1 cut(s) 667
CciI TCATGA 1 cut(s) 846
Cfr13I GGNCC 3 cut(s) 161, 410, 440
Csp6I GTAC 2 cut(s) 238, 396
CviAII CATG 8 cut(s) 82, 88, 250, 502, 606, 704, 751, 847
CviQI GTAC 2 cut(s) 238, 396
DdeI CTNAG 3 cut(s) 188, 255, 414
DpnI GATC 8 cut(s) 95, 405, 431, 468, 489, 633, 660, 807
DpnII GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
Eco130I CCWWGG 2 cut(s) 233, 501
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 440
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 440
EcoT14I CCWWGG 2 cut(s) 233, 501
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 2 cut(s) 233, 501
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 8 cut(s) 85, 91, 253, 505, 609, 707, 754, 850
FaqI GGGAC 4 cut(s) 263, 453, 667, 732
FatI CATG 8 cut(s) 81, 87, 249, 501, 605, 703, 750, 846
FauI CCCGC 3 cut(s) 538, 793, 850
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 2 cut(s) 631, 658
FblI GTMKAC 3 cut(s) 5, 271, 865
Fnu4HI GCNGC 3 cut(s) 297, 665, 827
FokI GGATG 3 cut(s) 473, 797, 976
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 3 cut(s) 297, 665, 827
FspBI CTAG 1 cut(s) 588
GluI GCNGC 3 cut(s) 297, 665, 827
GsuI CTGGAG 2 cut(s) 126, 250
HaeIII GGCC 4 cut(s) 162, 232, 411, 826
HapII CCGG 1 cut(s) 25
Hin1II CATG 8 cut(s) 85, 91, 253, 505, 609, 707, 754, 850
HindIII AAGCTT 2 cut(s) 521, 977
HinfI GANTC 4 cut(s) 219, 424, 497, 736
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 4 cut(s) 6, 37, 272, 866
Hpy188I TCNGA 7 cut(s) 208, 226, 244, 423, 429, 492, 931
Hpy188III TCNNGA 5 cut(s) 25, 143, 458, 847, 916
Hpy8I GTNNAC 4 cut(s) 6, 37, 272, 866
HpyAV CCTTC 2 cut(s) 209, 828
HpyCH4III ACNGT 5 cut(s) 34, 172, 448, 713, 775
HpyCH4IV ACGT 2 cut(s) 16, 274
HpyCH4V TGCA 4 cut(s) 37, 68, 122, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 687
HpyF3I CTNAG 3 cut(s) 188, 255, 414
HpySE526I ACGT 2 cut(s) 16, 274
Hsp92II CATG 8 cut(s) 85, 91, 253, 505, 609, 707, 754, 850
Kpn2I TCCGGA 1 cut(s) 24
Ksp22I TGATCA 2 cut(s) 631, 658
Kzo9I GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 308, 676
LweI GCATC 1 cut(s) 591
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 16, 274
MaeIII GTNAC 3 cut(s) 115, 373, 448
MalI GATC 8 cut(s) 95, 405, 431, 468, 489, 633, 660, 807
MboI GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
MboII GAAGA 2 cut(s) 296, 963
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 3 cut(s) 39, 187, 519
MluCI AATT 1 cut(s) 471
MnlI CCTC 3 cut(s) 409, 544, 726
MroI TCCGGA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 3 cut(s) 129, 299, 667
MspI CCGG 1 cut(s) 25
Mva1269I GAATGC 2 cut(s) 352, 629
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 1 cut(s) 687
NcoI CCATGG 1 cut(s) 501
NdeI CATATG 1 cut(s) 511
NdeII GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
NlaIII CATG 8 cut(s) 85, 91, 253, 505, 609, 707, 754, 850
NlaIV GGNNCC 3 cut(s) 163, 441, 489
NmeAIII GCCGAG 1 cut(s) 206
NspV TTCGAA 1 cut(s) 974
PagI TCATGA 1 cut(s) 846
PctI GAATGC 2 cut(s) 352, 629
PfeI GAWTC 4 cut(s) 219, 424, 497, 736
PkrI GCNGC 3 cut(s) 298, 666, 828
Ppu21I YACGTR 1 cut(s) 275
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
PspN4I GGNNCC 3 cut(s) 163, 441, 489
PspPI GGNCC 3 cut(s) 161, 410, 440
PspPPI RGGWCCY 1 cut(s) 440
PsrI GAACNNNNNNTAC 2 cut(s) 230, 262
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 1 cut(s) 487
PvuII CAGCTG 2 cut(s) 299, 667
RsaI GTAC 2 cut(s) 239, 397
RsaNI GTAC 2 cut(s) 238, 396
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 3 cut(s) 297, 665, 827
Sau3AI GATC 8 cut(s) 93, 403, 429, 466, 487, 631, 658, 805
Sau96I GGNCC 3 cut(s) 161, 410, 440
SduI GDGCHC 3 cut(s) 39, 187, 519
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 2 cut(s) 444, 642
SfuI TTCGAA 1 cut(s) 974
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SpeI ACTAGT 1 cut(s) 587
Sse9I AATT 1 cut(s) 471
SsiI CCGC 6 cut(s) 127, 382, 531, 800, 827, 857
SspMI CTAG 1 cut(s) 588
StyI CCWWGG 2 cut(s) 233, 501
TaaI ACNGT 5 cut(s) 34, 172, 448, 713, 775
TaiI ACGT 2 cut(s) 19, 277
TaqI TCGA 2 cut(s) 369, 974
TasI AATT 1 cut(s) 471
TatI WGTACW 1 cut(s) 395
TauI GCSGC 1 cut(s) 829
TfiI GAWTC 4 cut(s) 219, 424, 497, 736
TscAI CASTG 4 cut(s) 39, 192, 484, 728
TseI GCWGC 2 cut(s) 296, 664
TspDTI ATGAA 3 cut(s) 238, 535, 935
TspRI CASTG 4 cut(s) 39, 192, 484, 728
VneI GTGCAC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 440
XmiI GTMKAC 3 cut(s) 5, 271, 865
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.