Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000056

Physical Location & Seq

Genomic Coordinates Reverse (-)

85191912 .. 85192229

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53896

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTTACATTGGAGTCCTTTCAAACTCAGTGGGTCAGTTTCGTTCCTGCGACTAGATCATCAGTTGAGAAATTGCAGATGGTGAGACTTGATAGTTCGGAAGAATCGACTCTGAAACTGAACCCATTATGTAGTATATGTAAGGATGACTTTGCCAAAGGCTGTGTTGATCAATTGGTTATTCCTTTACCTTGCGCACACTACTATCATGTAGATTGCATTATCCGGTGGCGGGAGGTGGGTCACGTGTGCCCCTTGTGCCGATATGCCCTGCCAACTGTGCCAACTGAGGTAGATAGCGAGCCTTCAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

5.21

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	43 - 88	2.3e-09	Ring finger domain
zf-rbx1	PF12678	44 - 88	5.2e-06	RING-H2 zinc finger domain
zf-RING_11	PF17123	44 - 74	3.1e-06	RING-like zinc finger
zf-C3HC4	PF00097	44 - 87	2.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	44 - 85	6.4e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74620
fragaria_vesca	FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica	MD14G1195700.v1.1
prunus_persica	Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis	pycom17g01390
rosa_chinensis	RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata	RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora	Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii	Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa	Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha	Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana	Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	196
AciI	CCGC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	310
AcvI	CACGTG	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	23, 309
Alw26I	GTCTC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	247
BccI	CCATC	1 cut(s)	73
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	41, 279
BseSI	GKGCMC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	56, 169
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	40, 280
BssMI	GATC	2 cut(s)	56, 169
Bst4CI	ACNGT	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	27, 288
BstF5I	GGATG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	59, 172
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	2 cut(s)	56, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 280
BstSLI	GKGCMC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	197
CspCI	CAANNNNNGTGG	2 cut(s)	11, 46
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	2 cut(s)	162, 304
CviKI_1	RGCY	2 cut(s)	162, 304
DdeI	CTNAG	2 cut(s)	27, 288
DpnI	GATC	2 cut(s)	58, 171
DpnII	GATC	2 cut(s)	56, 169
Eco72I	CACGTG	1 cut(s)	247
FaeI	CATG	1 cut(s)	212
FaiI	YATR	5 cut(s)	130, 137, 139, 210, 267
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	208
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	169
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	1 cut(s)	196
HapII	CCGG	1 cut(s)	226
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	3 cut(s)	14, 104, 109
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	100, 114
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	76, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 280
HpyF3I	CTNAG	2 cut(s)	27, 288
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	56, 169
LpnPI	CCDG	3 cut(s)	60, 239, 284
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	58, 171
MboI	GATC	2 cut(s)	56, 169
MboII	GAAGA	1 cut(s)	113
MfeI	CAATTG	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	3 cut(s)	71, 173, 310
MlyI	GAGTC	2 cut(s)	23, 103
MnlI	CCTC	2 cut(s)	229, 283
MseI	TTAA	1 cut(s)	316
MspI	CCGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	258, 280
NdeII	GATC	2 cut(s)	56, 169
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	242
NsbI	TGCGCA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	104
PleI	GAGTC	2 cut(s)	22, 103
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	2 cut(s)	22, 103
Ppu21I	YACGTR	1 cut(s)	247
PspCI	CACGTG	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	316
Sau3AI	GATC	2 cut(s)	56, 169
SchI	GAGTC	2 cut(s)	23, 103
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	4 cut(s)	193, 240, 249, 294
Sse9I	AATT	3 cut(s)	71, 173, 310
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	71, 173, 310
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	310
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.