Rmu_sc0006328.1_g000005

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006328.1
OG0000056
Physical Location & Seq
Forward (+)
25320 .. 30782
5463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006328.1_g000005.1.cds

Sequence Viewer

Length: 1164 bp
atgtcctctgccacctccaagtccgattacttcgtcttctttatctttctccatcgtcctctgccctcaatctccgatcggcggtgcgctggatcacatccgaagctcgaagtcgtccctctgccctcaatctccaatctcagatcggcagtgcgttggatcacatccgaagctcgaagtcgtccctctacccttaatctccaatctcggatcggcagtgcgctggattgcatccgaagctcgaagtcgtccctctgccctcaatctccgatcggtggtgcactggatcgcatccgaagctcgaagcggttagatccgattggtttagatgcatacaagttgactgtgcaatttcaagccttcgaacttgtcaattcccaggctaatgaaagttcttcaagcatgtccacagagaggcatatattcgctagcacagccttgcaagtagaaactgggcactctgtaccaagtttggatttccctcgtgtgcatccgatccgtctacgtctctttaagcaaacccgggtttggtatgatgatccagccgactttacaacagatggtgaaccaactttcgtgactgagaaaggacttttgctcggcagttgctccagcccaacaagcattgttcgcgagtatctttcgagtatgggtgtcccacaacaagaacacaaagttatttctagcaaaatatttgcgcgcattttgttcgacgtagctaataatttgcctattactgtgaatatactggacatcactgtggtcttattgggtgctgcgcaatatcatgacattatagatcgggttgcaatagaaaccatcctatttgaggatgagtaccgtaatagggtcaattttattcctgcaagtagatcatcgatcaagagtttgaagaaaacaagacttgatagtttggaagagtttgttatcagactcatcccgtcatgtgctatttgtctcgaggactttgcaggatgtactgatcaaatgagagagaagtcatcatccaccttgctgtgctccggtgaccagtggccggccgcggactccggtgaccggattcctgcaaccgatcaccggaatcgggcaaccggtcacaggaatctcgaattcggctaccggactggtgaccggattccggcgtttgattttattgccccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

387

Amino Acids

43.08

Weight (kDa)

8.1

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 780
AccI GTMKAC 1 cut(s) 502
AccII CGCG 3 cut(s) 633, 700, 1043
AciI CCGC 4 cut(s) 82, 307, 1041, 1043
AclWI GGATC 7 cut(s) 100, 167, 218, 294, 308, 490, 533
AcoI YGGCCR 2 cut(s) 1034, 1038
AcsI RAATTY 1 cut(s) 1109
AfaI GTAC 3 cut(s) 465, 839, 979
AgeI ACCGGT 1 cut(s) 1091
AgsI TTSAA 3 cut(s) 356, 399, 892
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 5 cut(s) 106, 173, 240, 300, 719
AluI AGCT 5 cut(s) 106, 173, 240, 300, 719
Alw21I GWGCWC 2 cut(s) 283, 1022
Alw26I GTCTC 2 cut(s) 512, 962
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 7 cut(s) 100, 167, 218, 294, 308, 490, 533
Ama87I CYCGRG 2 cut(s) 522, 959
AoxI GGCC 2 cut(s) 1034, 1038
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 776
ApoI RAATTY 1 cut(s) 1109
AsiGI ACCGGT 1 cut(s) 1091
AspLEI GCGC 5 cut(s) 89, 223, 700, 702, 781
AsuC2I CCSGG 2 cut(s) 523, 524
AsuHPI GGTGA 5 cut(s) 575, 1037, 1064, 1067, 1139
AsuII TTCGAA 1 cut(s) 363
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 522, 959
BaeGI GKGCMC 2 cut(s) 283, 459
BauI CACGAG 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 2 cut(s) 283, 1022
BbvI GCAGC 1 cut(s) 763
BccI CCATC 3 cut(s) 60, 554, 827
BcgI CGANNNNNNTGC 4 cut(s) 691, 725, 950, 984
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 982
BcnI CCSGG 2 cut(s) 523, 524
BcoDI GTCTC 2 cut(s) 512, 962
BfaI CTAG 2 cut(s) 429, 684
BisI GCNGC 2 cut(s) 777, 1041
BlsI GCNGC 2 cut(s) 778, 1042
Bme1390I CCNGG 3 cut(s) 380, 523, 524
BmeT110I CYCGRG 2 cut(s) 522, 959
BmrFI CCNGG 3 cut(s) 380, 523, 524
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 4 cut(s) 240, 300, 319, 499
BmtI GCTAGC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 595
Bpu14I TTCGAA 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 523, 524
Bsa29I ATCGAT 1 cut(s) 878
BsaJI CCNNGG 3 cut(s) 378, 522, 1041
BsaWI WCCGGW 7 cut(s) 1022, 1049, 1056, 1077, 1091, 1119, 1131
Bse118I RCCGGY 2 cut(s) 1036, 1091
Bse1I ACTGG 5 cut(s) 288, 457, 753, 1030, 1129
BseBI CCWGG 1 cut(s) 380
BseCI ATCGAT 1 cut(s) 878
BseDI CCNNGG 3 cut(s) 378, 522, 1041
BseMII CTCAG 2 cut(s) 154, 573
BseNI ACTGG 5 cut(s) 288, 457, 753, 1030, 1129
BsePI GCGCGC 1 cut(s) 698
BseSI GKGCMC 2 cut(s) 283, 459
BseX3I CGGCCG 1 cut(s) 1038
BseXI GCAGC 1 cut(s) 763
Bsh1236I CGCG 3 cut(s) 633, 700, 1043
Bsh1285I CGRYCG 3 cut(s) 79, 273, 1041
BshFI GGCC 2 cut(s) 1036, 1040
BshTI ACCGGT 1 cut(s) 1091
BshVI ATCGAT 1 cut(s) 878
BsiEI CGRYCG 3 cut(s) 79, 273, 1041
BsiHKAI GWGCWC 2 cut(s) 283, 1022
BsiHKCI CYCGRG 2 cut(s) 522, 959
BslFI GGGAC 4 cut(s) 101, 168, 235, 641
BsmAI GTCTC 2 cut(s) 512, 962
BsmBI CGTCTC 1 cut(s) 512
BsmFI GGGAC 4 cut(s) 101, 168, 235, 641
BsnI GGCC 2 cut(s) 1036, 1040
BsoBI CYCGRG 2 cut(s) 522, 959
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 3 cut(s) 283, 459, 1022
Bsp68I TCGCGA 1 cut(s) 633
BspACI CCGC 4 cut(s) 82, 307, 1041, 1043
BspANI GGCC 2 cut(s) 1036, 1040
BspCNI CTCAG 2 cut(s) 153, 574
BspDI ATCGAT 1 cut(s) 878
BspFNI CGCG 3 cut(s) 633, 700, 1043
BspHI TCATGA 1 cut(s) 787
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 7 cut(s) 100, 167, 218, 294, 308, 490, 533
BspT104I TTCGAA 1 cut(s) 363
BsrFI RCCGGY 2 cut(s) 1036, 1091
BsrI ACTGG 5 cut(s) 288, 457, 753, 1030, 1129
BssAI RCCGGY 2 cut(s) 1036, 1091
BssECI CCNNGG 3 cut(s) 378, 522, 1041
BssHII GCGCGC 1 cut(s) 698
BssSI CACGAG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 4 cut(s) 346, 739, 760, 842
Bst6I CTCTTC 1 cut(s) 912
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 3 cut(s) 430, 700, 1038
BstDEI CTNAG 2 cut(s) 140, 582
BstDSI CCRYGG 1 cut(s) 1041
BstEII GGTNACC 3 cut(s) 1025, 1052, 1127
BstENI CCTNNNNNAGG 1 cut(s) 827
BstFNI CGCG 3 cut(s) 633, 700, 1043
BstHHI GCGC 5 cut(s) 89, 223, 700, 702, 781
BstMAI GTCTC 2 cut(s) 512, 962
BstMCI CGRYCG 3 cut(s) 79, 273, 1041
BstMWI GCNNNNNNNGC 5 cut(s) 237, 297, 434, 621, 630
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 406
BstPI GGTNACC 3 cut(s) 1025, 1052, 1127
BstSCI CCNGG 3 cut(s) 378, 521, 522
BstSLI GKGCMC 2 cut(s) 283, 459
BstUI CGCG 3 cut(s) 633, 700, 1043
BstV1I GCAGC 1 cut(s) 763
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BstZI CGGCCG 1 cut(s) 1038
Bsu15I ATCGAT 1 cut(s) 878
BsuRI GGCC 2 cut(s) 1036, 1040
BsuTUI ATCGAT 1 cut(s) 878
BtgI CCRYGG 1 cut(s) 1041
BtsI GCAGTG 2 cut(s) 156, 223
BtsIMutI CAGTG 5 cut(s) 156, 223, 281, 756, 1037
BtuMI TCGCGA 1 cut(s) 633
Cac8I GCNNGC 3 cut(s) 430, 700, 1038
CciI TCATGA 1 cut(s) 787
CfoI GCGC 5 cut(s) 89, 223, 700, 702, 781
Cfr10I RCCGGY 2 cut(s) 1036, 1091
Cfr42I CCGCGG 1 cut(s) 1044
Cfr9I CCCGGG 1 cut(s) 522
ClaI ATCGAT 1 cut(s) 878
Csp6I GTAC 3 cut(s) 464, 838, 978
CspAI ACCGGT 1 cut(s) 1091
CviAII CATG 3 cut(s) 403, 788, 945
CviQI GTAC 3 cut(s) 464, 838, 978
DdeI CTNAG 2 cut(s) 140, 582
EaeI YGGCCR 2 cut(s) 1034, 1038
EagI CGGCCG 1 cut(s) 1038
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
EclXI CGGCCG 1 cut(s) 1038
Eco52I CGGCCG 1 cut(s) 1038
Eco88I CYCGRG 2 cut(s) 522, 959
Eco91I GGTNACC 3 cut(s) 1025, 1052, 1127
EcoNI CCTNNNNNAGG 1 cut(s) 827
EcoO65I GGTNACC 3 cut(s) 1025, 1052, 1127
EcoRI GAATTC 1 cut(s) 1109
EcoRII CCWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 3 cut(s) 406, 791, 948
FaqI GGGAC 4 cut(s) 101, 168, 235, 641
FatI CATG 3 cut(s) 402, 787, 944
FbaI TGATCA 1 cut(s) 982
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 777, 1041
FseI GGCCGGCC 1 cut(s) 1040
Fsp4HI GCNGC 2 cut(s) 777, 1041
FspBI CTAG 2 cut(s) 429, 684
FspI TGCGCA 1 cut(s) 780
GlaI GCGC 5 cut(s) 88, 222, 699, 701, 780
GluI GCNGC 2 cut(s) 777, 1041
GsuI CTGGAG 1 cut(s) 595
HaeIII GGCC 2 cut(s) 1036, 1040
HhaI GCGC 5 cut(s) 89, 223, 700, 702, 781
Hin1II CATG 3 cut(s) 406, 791, 948
Hin6I GCGC 5 cut(s) 87, 221, 698, 700, 779
HinP1I GCGC 5 cut(s) 87, 221, 698, 700, 779
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 6 cut(s) 933, 1046, 1060, 1081, 1102, 1135
HphI GGTGA 5 cut(s) 575, 1037, 1064, 1067, 1139
Hpy166II GTNNAC 5 cut(s) 281, 342, 408, 503, 566
Hpy188III TCNNGA 6 cut(s) 577, 632, 788, 883, 959, 1106
Hpy8I GTNNAC 5 cut(s) 281, 342, 408, 503, 566
Hpy99I CGWCG 1 cut(s) 716
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 4 cut(s) 346, 739, 760, 842
HpyCH4IV ACGT 2 cut(s) 505, 714
HpyF10VI GCNNNNNNNGC 5 cut(s) 237, 297, 434, 621, 630
HpyF3I CTNAG 2 cut(s) 140, 582
HpySE526I ACGT 2 cut(s) 505, 714
Hsp92II CATG 3 cut(s) 406, 791, 948
HspAI GCGC 5 cut(s) 87, 221, 698, 700, 779
KroI GCCGGC 1 cut(s) 1036
KroNI GCCGGC 1 cut(s) 1038
Ksp22I TGATCA 1 cut(s) 982
KspI CCGCGG 1 cut(s) 1044
LmnI GCTCC 2 cut(s) 614, 1025
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 4 cut(s) 240, 300, 319, 499
MaeI CTAG 2 cut(s) 429, 684
MaeII ACGT 2 cut(s) 505, 714
MaeIII GTNAC 5 cut(s) 577, 1025, 1052, 1094, 1127
MboII GAAGA 4 cut(s) 28, 387, 904, 929
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 3 cut(s) 283, 459, 1022
MluCI AATT 5 cut(s) 350, 373, 724, 853, 1109
MlyI GAGTC 2 cut(s) 927, 1040
MmeI TCCRAC 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 334
MroNI GCCGGC 1 cut(s) 1036
MseI TTAA 2 cut(s) 195, 513
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 1043
MspR9I CCNGG 3 cut(s) 380, 523, 524
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 3 cut(s) 633, 700, 1043
MwoI GCNNNNNNNGC 5 cut(s) 237, 297, 434, 621, 630
NaeI GCCGGC 1 cut(s) 1038
NciI CCSGG 2 cut(s) 523, 524
NgoMIV GCCGGC 1 cut(s) 1036
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 3 cut(s) 406, 791, 948
NmeAIII GCCGAG 1 cut(s) 579
NmuCI GTSAC 5 cut(s) 577, 1025, 1052, 1094, 1127
NruI TCGCGA 1 cut(s) 633
NsbI TGCGCA 1 cut(s) 780
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 959
PagI TCATGA 1 cut(s) 787
PauI GCGCGC 1 cut(s) 698
PdiI GCCGGC 1 cut(s) 1038
PfeI GAWTC 4 cut(s) 1060, 1081, 1102, 1135
PinAI ACCGGT 1 cut(s) 1091
PkrI GCNGC 2 cut(s) 778, 1042
Ple19I CGATCG 2 cut(s) 79, 273
PleI GAGTC 2 cut(s) 927, 1040
PpsI GAGTC 2 cut(s) 927, 1040
Psp6I CCWGG 1 cut(s) 378
PspEI GGTNACC 3 cut(s) 1025, 1052, 1127
PspGI CCWGG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 313
PteI GCGCGC 1 cut(s) 698
PvuI CGATCG 2 cut(s) 79, 273
RigI GGCCGGCC 1 cut(s) 1040
RruI TCGCGA 1 cut(s) 633
RsaI GTAC 3 cut(s) 465, 839, 979
RsaNI GTAC 3 cut(s) 464, 838, 978
RseI CAYNNNNRTG 1 cut(s) 758
SacII CCGCGG 1 cut(s) 1044
SaqAI TTAA 2 cut(s) 195, 513
SatI GCNGC 2 cut(s) 777, 1041
SchI GAGTC 2 cut(s) 927, 1040
ScrFI CCNGG 3 cut(s) 380, 523, 524
SduI GDGCHC 3 cut(s) 283, 459, 1022
SetI ASST 9 cut(s) 17, 108, 175, 242, 302, 508, 717, 721, 1013
SfaNI GCATC 4 cut(s) 240, 300, 319, 499
Sfr274I CTCGAG 1 cut(s) 959
Sfr303I CCGCGG 1 cut(s) 1044
SfuI TTCGAA 1 cut(s) 363
SgrBI CCGCGG 1 cut(s) 1044
SlaI CTCGAG 1 cut(s) 959
SmaI CCCGGG 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
Sse9I AATT 5 cut(s) 350, 373, 724, 853, 1109
SsiI CCGC 4 cut(s) 82, 307, 1041, 1043
SspI AATATT 1 cut(s) 693
SspMI CTAG 2 cut(s) 429, 684
StyD4I CCNGG 3 cut(s) 378, 521, 522
TaaI ACNGT 4 cut(s) 346, 739, 760, 842
TaiI ACGT 2 cut(s) 508, 717
TasI AATT 5 cut(s) 350, 373, 724, 853, 1109
TatI WGTACW 1 cut(s) 977
TauI GCSGC 1 cut(s) 1043
TfiI GAWTC 4 cut(s) 1060, 1081, 1102, 1135
Tru1I TTAA 2 cut(s) 195, 513
Tru9I TTAA 2 cut(s) 195, 513
TscAI CASTG 5 cut(s) 156, 223, 288, 763, 1037
TseFI GTSAC 5 cut(s) 577, 1025, 1052, 1094, 1127
TseI GCWGC 1 cut(s) 776
Tsp45I GTSAC 5 cut(s) 577, 1025, 1052, 1094, 1127
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 488
TspMI CCCGGG 1 cut(s) 522
TspRI CASTG 5 cut(s) 156, 223, 288, 763, 1037
VneI GTGCAC 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 827
XapI RAATTY 1 cut(s) 1109
XceI RCATGY 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 959
XmaI CCCGGG 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 2 cut(s) 429, 684
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.